Pimephales promelas (fathead minnow): 120480495 Help Entry 120480495         CDS       T08155                                  Symbol col6a1 Name (RefSeq) collagen alpha-1(VI) chain   KO K06238   collagen type VI alpha Organism pprm  Pimephales promelas (fathead minnow) Pathway pprm04510   Focal adhesion pprm04512   ECM-receptor interaction pprm04518   Integrin signaling pprm04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:pprm00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     120480495 (col6a1)    04518 Integrin signaling     120480495 (col6a1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     120480495 (col6a1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     120480495 (col6a1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:pprm04147]     120480495 (col6a1)    00536 Glycosaminoglycan binding proteins [BR:pprm00536]     120480495 (col6a1) Exosome [BR:pprm04147]  Exosomal proteins   Exosomal proteins of other body fluids (saliva and urine)    120480495 (col6a1) Glycosaminoglycan binding proteins [BR:pprm00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    120480495 (col6a1)  Hyaluronan   Extracellular matrix or blood plasma proteins    120480495 (col6a1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  VWA Collagen VWA_2 VWA_3 VWA_CoxE Motif Other DBs NCBI-GeneID:  120480495 NCBI-ProteinID:  XP_039529619 LinkDB All DBs Position Unknown AA seq 1007 aa AA seqDB search MALNGYILTALCALWAGIFAQDVSRSSFRECPVDLFFVLDTSESVALRAKPPEFYINQIK TFTKLFIDELKNLRQPCDRDVTWNSGALHYSDETELVMELVDLNTKRADLKAAIDKIKYI GKGTYTDCAIKDGIAELLRAGSHYHENKYIVVVTDGHPVTGYKEPCGGIQEAANEARQHA IKVFAVAISPDQEDTRLSVIATDVNYRQNFTAADNSRSTQLSSIHSIINMITNETKDVCC SFDCNAPGGPQGPPGDPGQRGETGRPGMPGEKGSLGSPGKAGDPGPVGYQGMKGDQGTRG DKGDRGHKGFKGDKGYSGLDGIDGRKGEPGFSGLPGCKGSPGPDGLQGEPGPKGDPGQYG SKGERGDPGKDGEPGRPGNYGPSGAKGDRGPRGTNGDKGERGDDGPTGPNGPIGDRGTPG EKGEQGSRGNRGPRGEIGEPGPRGEQGREGSSGPNGDPGEPGRAGAPGYRGDEGPTGPEG KKGVRGIKGAPGDRGLIGERGDDGPQGNGTEGCHGFQGYPGPRGDPGAPGGKGTPGPKGD DGDPGDPGLDNNRPGPPGPKGAKGHRGPEGSSGPPGPPGPQGADECEILDIIMKMCSCCE CTCGPLDIAFIVDSSESIGSSNFAIAKDFIVTVMDRLKLRQFGANESRIGVVQYSGANAQ EVVQLGDPNIKTLTDLKQAVKELRWLAEATYTGEALQFSLNKMISKLVTEKSVVLVLTDG RSDTKRDKVPLNVLCGKGLKVGGVGVADYAERNPNREQLDEVVCKDDPRKGFSFVLNNFG VLLDDSFLQNLTDKICEDKKCPTYTCPISFVDNTDVLIMMDSSASVGSKNFEMTKDFTRM LAKRFLSAERGGFQVRVGVGQYSNNANLEAEFSSNATQVVAQIAEAKFQSQGTQVTNALN FAIERFRGGRTRKKKLLVFSDGRSQGVNTIQIEKAVEQVSKAGIELYVLAAGNQVNEANL RTLVSRGRPYDNTYAYRHLFKVPDYRSMVTGVFYQTVSRKISLESRG NT seq 3024 nt NT seq  +upstreamnt  +downstreamnt atggcgcttaatggatatatattgaccgctctgtgcgcactttgggcagggatcttcgct caggatgtctcaagatcctccttcagagagtgtcctgtggatttgttctttgtgttggac acatctgaaagtgtggccctcagagccaaacctccagagttctacatcaaccagatcaag accttcactaagctcttcatcgatgagctgaaaaacctgcgacagccttgtgaccgtgat gtgacgtggaactcaggagcgctgcactacagtgacgaaacggagctggtgatggaatta gttgacctgaacacaaaacgcgctgacctgaaggctgccatagacaaaatcaaatacata ggcaaaggaacatacaccgactgtgccatcaaggatggtatcgctgagctgcttcgagcg ggctcccactatcatgagaataagtacattgtggtggtcacggatggtcaccctgtgacc ggctacaaggagccttgtggtggtatccaggaggctgccaatgaagcacgacaacacgcc atcaaagtgttcgctgtggccatctcacctgaccaggaggacaccagactgtctgtcatt gccacagatgtgaactacagacagaacttcaccgctgcagacaactcccgctccacacag ctgagctctatacactccatcatcaacatgattacaaatgaaacaaaggatgtgtgctgc tcctttgactgcaacgcccctggaggccctcagggaccccctggagatccaggacaaaga ggagagactggaagaccaggcatgccgggagagaaaggaagtcttggctctccgggaaag gctggtgatcccgggccagtcggttaccaaggaatgaagggagaccaaggaacgagaggt gataagggagatagaggtcataaaggcttcaagggagacaaaggttacagcggtcttgat ggcatcgatggacgtaagggtgagccgggattttctggccttccaggctgcaaagggtca ccagggccagatggcttgcaaggagaaccaggtcctaaaggagaccccggccaatatgga tccaaaggagaaagaggagatcctggtaaagatggtgaacctggaagacctggaaactac ggaccttcaggtgccaagggagataggggtcctcgtggtaccaatggtgataaaggcgag agaggagatgatggaccaacaggaccaaacggcccaatcggagacagaggcacacctggt gaaaaaggtgaacaaggttcccgtggtaacagagggcccagaggcgagattggtgaacct gggccccggggtgagcaaggacgcgaggggtcatctgggccaaacggagacccgggcgag ccaggcagggcaggggcaccaggttaccgtggcgatgaaggtcctactgggccagagggg aaaaaaggggtcagaggaatcaaaggagccccaggagacagaggcctaataggagagagg ggtgatgatggaccacaaggaaatggaacagaagggtgccatggtttccagggctatcct ggccccaggggagatccaggagcgcctggtggaaaagggacccctggacccaagggagat gatggagatccaggtgaccctggattagataacaacaggccaggaccacctgggcctaaa ggagccaaaggtcaccgaggacctgaaggaagttctggaccaccaggaccacctgggcct caaggagcagatgaatgtgagattctggatatcatcatgaagatgtgctcttgctgtgaa tgcacatgcggacccctggacattgctttcattgtggacagctctgagagtattggctct tctaactttgccattgccaaagacttcatcgtgacggtgatggacagactcaaattaaga cagtttggtgccaatgagtctcgtattggcgtggtgcagtacagcggtgctaatgctcag gaggtcgtacagcttggtgaccccaacattaagaccctgacagacctaaaacaagctgtg aaagagttgcgctggctagctgaagccacatacaccggagaagctctgcagttctcgcta aataaaatgattagcaagctagtgacggagaagagtgtggtccttgtcctaactgatgga cgctctgacaccaagagggacaaagtgcccttaaacgtgctgtgtggcaaaggactgaag gttggtggcgttggagtcgcggattatgcagaacgaaaccccaatcgagaacagcttgat gaggttgtgtgtaaagatgatcccagaaaaggtttctcctttgtcctgaacaactttggt gttcttctggatgacagtttcctgcaaaacctgactgataaaatctgtgaagacaagaag tgtcccacttatacttgtccaatttcatttgtcgacaacaccgatgtcctcatcatgatg gacagctcggccagcgtgggctccaagaacttcgagatgaccaaggatttcacacggatg ctggctaagcgttttctgtcagcagaaagaggaggtttccaggtccgggttggcgttggc cagtacagcaacaatgccaacttagaggcggagttttcctcaaacgccacccaggtggtg gctcaaatcgcagaagccaagttccagagtcaaggtacacaggtaacaaacgctctcaac tttgccatcgagcgcttcaggggtggcaggacgaggaagaagaagctgctggtgttttcg gatggtcgttcccaaggcgtcaacaccatccagattgagaaagccgtggagcaggtgagc aaagcgggcatcgagctgtacgtactggccgcgggaaatcaggtgaacgaggcaaatctg cgcacactggtgagccgtggccggccgtatgacaacacgtacgcctaccgccaccttttc aaagtacctgactaccgctcgatggtcactggggtcttttaccaaactgtctcccgcaag atttccctggagtcgagggggtga

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