Pseudomonas protegens Cab57: PPC_1835
Help
Entry
PPC_1835 CDS
T03613
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppro
Pseudomonas protegens Cab57
Pathway
ppro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPC_1835 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppro03019
]
PPC_1835 (rne)
03009 Ribosome biogenesis [BR:
ppro03009
]
PPC_1835 (rne)
Enzymes [BR:
ppro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PPC_1835 (rne)
Messenger RNA biogenesis [BR:
ppro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PPC_1835 (rne)
Ribosome biogenesis [BR:
ppro03009
]
Prokaryotic type
rRNA processing factors
PPC_1835 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
BAO61182
LinkDB
All DBs
Position
complement(2012154..2015360)
Genome browser
AA seq
1068 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREC
LEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEANTNQSSYEIAAAAAEAEEVQPTAATRTLVRQEAAVKTAPARANAPVPTEVV
AAPVAAPAPVAEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPVTERPARSNEEQRRNGRQ
QSRNRNGRRDEERKPREERAPREERAPREERQPREVREAREEVQAVAREERAPRAPREER
QPRAPREERKPRGEREERVRELREPLDAAPAAAAATAAVVAEERPARQPREERQPRAPRE
ERQPRAEQAQAAAASEEALPNEEQLQEDGQDNAEGERPRRRSRGQRRRSNRRERQRDANG
NVIEGSEENAEEPSSADLAAGLAVTAAVASTAISANAEAEAHQQAERATAAVEDKAPEAP
VVEATTPVEAPVVPAVEVAPVAEEQAQVEVAAEPAVVVEAQPVVAEHPAAEPVAQAPVVE
EKAIEPVQEAPAPAPVAEPAVVVEEPVAAQQPAQVEEPAPVAAPVVAEEPAPAVEAEAAP
VSTLTSNGRAPNDPREVRRRKREAERLQKEAELAAAAAPAEAVVTAEPAPVEAPEVVEAA
PAPAEETAPAPVAEPAVEEAAPVAEQAPRAVEHAAHAEEEQHEPKPLV
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacccgaagagttgcgtgttgctctggtagacggccagcgc
ctctacgacctggacatcgagtccggagcccgcgagcagaaaaaggccaacatctataaa
ggccgcatcactcgcatcgaaccaagcctcgaggctgcctttgtcgatttcggctctgag
cgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaagcccccgaa
ggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtccaggtcgag
aaagaagagcgtggcaacaagggcgccgccctgaccaccttcatcagcctcgccggccgt
tacctggtactgatgccgaacaacccgcgtgccggcggtatctcccgccgcatcgaaggc
gaagagcgcaacgaactgcgtgaagcgctgaacggcctggtggcaccagccgacatgggc
ctgatcgtgcgcactgccggcctgggccgcagcagcgaagagatgcagtgggacctcgac
tacctgctgcaactctggaccgccatcaaggaagcgtccctggatcgttccgcgccattc
ctgatctaccaggaaagtaacgtgatcatccgcgcgatccgcgactacctgcgccaggac
atcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgaccttcatccgc
caggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtgccgctgttc
aaccgtttccagatcgaaagccagatcgagaccgctttccagcgcgtggtcgaactgcct
tccggcggctccatcgtcatcgatccgaccgaagccctggtgtccatcgacatcaactcg
gcccgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaacctggaagca
gcggaagaaatcgctcgccaactgcgcctgcgtgacatcggcggcctgatcgtcatcgac
ttcatcgacatgaccccggccaagaaccagcgcgccgtggaagaaaaagtccgcgaatgc
ctggaagccgaccgcgcccgcgtgcagatcggccgcatctcgcgcttcggcctgctggaa
atgtcccgtcagcgcctgcgtccatccctgggcgaaagcagcggcatcgtctgcccgcgc
tgcaacggcaccggcatcatccgtgacgtcgagtcgctgtccctggcgatcctgcgcctg
atcgaagaagaagccctgaaagaccgcaccgccgaagtgcgcgcccaagtgccgattccg
gtcgctgctttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaactgcgcacc
cgcgcccgcatcgtcatcctgccgaacgatcacctcgaaacgccacacttcgaagttcag
cgcctgcgtgatgacagcccggaagccaacactaaccagtccagctacgaaatcgcagcg
gccgccgccgaagccgaagaagtccagccgaccgccgccacccgcaccctggttcgccag
gaagcggcagtgaagactgccccggcccgcgccaacgctccggttccgaccgaagtcgtc
gctgcccctgtagctgcaccggctccagtggccgaaccaagcctgttcaaaggcctggtg
aagtccctggtcagcctgttcgctaccaaggaagagccagccgcaccggtcgtggtcgag
aagccagtgaccgagcgccctgctcgcagcaacgaagaacagcgtcgcaatggccgccag
cagagccgcaaccgtaacggtcgccgcgatgaagagcgcaagccgcgcgaagaacgtgct
ccgcgtgaagaacgcgcaccacgggaagagcgtcagccacgcgaagttcgcgaagcccgt
gaagaagttcaagcggtagcccgcgaagaacgcgcaccccgtgcaccgcgcgaagaacgc
cagccacgcgccccgcgtgaggagcgcaagccacgtggcgagcgtgaagaacgcgtgcgt
gaactgcgcgagccactggacgccgctccagctgcagccgctgctaccgccgccgttgtt
gccgaagaacgtccggcgcgccagcctcgcgaagagcgccagccacgtgcgccacgtgaa
gagcgccaaccacgtgccgaacaggctcaagccgctgccgccagcgaagaagcgctgccg
aacgaagagcaactgcaggaagacggccaggacaacgccgaaggcgaacgcccacgtcgt
cgctcccgcggccagcgtcgtcgcagcaaccgtcgcgagcgtcaacgtgatgccaacggc
aatgtgatcgaaggctcggaagaaaacgccgaagaaccaagcagcgccgatctggctgcc
ggccttgcggtaactgccgcggttgccagcaccgccatcagcgccaacgctgaagccgaa
gctcaccagcaagccgaacgtgcgactgccgctgtagaagacaaggctccggaagcacca
gtggttgaagccaccacgccggtagaagccccagtggttcctgcagtggaagtggctcca
gtggctgaagagcaggctcaggttgaagtggctgccgaaccggccgtggttgtcgaagcc
cagcctgtggttgccgaacacccggcagcagaacctgtagcccaggcgccagtggttgaa
gaaaaggccatcgagccggttcaggaagcccctgcgccagccccggttgccgagccagca
gtggtggttgaagagcctgtagcggcccagcaacctgcccaggttgaagagccggctccg
gttgcagcaccggtggtggccgaagagcccgcacccgctgtcgaagctgaagccgcgccg
gtcagcaccctgaccagcaatggccgtgcaccgaacgacccacgcgaagtgcgtcgccgc
aagcgtgaagccgagcgcctgcagaaggaagccgagctggctgccgctgctgctccggct
gaagccgtggtgaccgccgagcctgctccggtagaagcgccagaggtggtcgaggccgcc
cctgcgccagccgaagagactgcaccggcaccagtggccgaacctgcagtggaagaagcg
gcccctgtggccgagcaagcaccgcgcgctgtcgagcacgctgcgcatgccgaggaagaa
cagcacgagcctaaacctctcgtctga
DBGET
integrated database retrieval system
