Paroceanicella profunda: FDP22_01745
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Entry
FDP22_01745 CDS
T06319
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ppru
Paroceanicella profunda
Pathway
ppru03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FDP22_01745 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppru03021
]
FDP22_01745 (rpoB)
03400 DNA repair and recombination proteins [BR:
ppru03400
]
FDP22_01745 (rpoB)
Enzymes [BR:
ppru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FDP22_01745 (rpoB)
Transcription machinery [BR:
ppru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FDP22_01745 (rpoB)
DNA repair and recombination proteins [BR:
ppru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FDP22_01745 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QDL90620
UniProt:
A0A5B8FU48
LinkDB
All DBs
Position
complement(395573..399676)
Genome browser
AA seq
1367 aa
AA seq
DB search
MAQTYSGRKRIRKFYGKIAEVAKMPNLIEVQKSSYDLFLKSGDAATPTDGDGIQGVFQSV
FPIKDFNETAVLEFVRYELEHPKYDVEECQQRDMTYSAPLKVTLRLIVFEVDPDTGARSV
KDIKEQDVYMGDMPLMTSNGTFVVNGTERVIVSQMHRSPGVFFDHDRGKTHSSGKLLFAS
RVIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEGICDAFYKTMTFRRER
SGWAAPFFPERIRGSKPAHDIIDAASGEVIAEAGKKVTPRTVKQLIDEGKVTEILVPYEG
ILGRHMAKDLVNPETGFIYAEAGDEITDKLLQELIDAGYDEVPTLDIDHVNVGAYIRNTM
AADKNYNRESALIDIYRVMRPGEPPTVEAADAMFSTLFFDPERYDLSAVGRVKMNMRLDL
DAPDTTRVLRNEDIIAVIRALVDLRDGRGEIDDIDHLGNRRVRSVGELMENQYRVGLLRM
ERAIKERMSSVEIDTIMPQDLINSKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLS
ALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLASFARVNKYGFIETPY
RKVDNGQVTDEVIYMSATEEMKYTIAQANAQLDENGRFINDMASTRKGGEFQLAPIDHID
YIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGIEEVVARD
SGAAITARRGGVIDQVDATRIVVRVTDEMAEPGDPGVDIYRLRKFQRSNQNTCINQRPLV
KVGDTVRAGDVVADGPSTDLGELALGKNVLVAFMPWNGYNYEDSILISERIVKDDVFTSI
HIEEFEIAARDTKLGPEEITRDIPNVGEEALRNLDEAGIIYIGAEVGPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKAADVRDTSMRMSPGDYGTVVEVRVFNRHGVDKDERALQIERE
EIERLTRDRADELAILERNIYARLKDLILGKPAVKGPKGVKSGSEITENLLGELSRGQWW
QLVIGDEAEQAKIEALNKQFDAQKKVLDRRFEDKVEKVRRGDDLPPGVMKMVKVFVAVKR
KLQPGDKMAGRHGNKGVISRVVPEEDMPFLADGTPVDFVLNPLGVPSRMNVGQILETHMG
WAARGLGLTVQTALDEYRSKGDMTPVKDALKFVYGDETYNDATADMTDAELLEAAGNVTR
GVPIATPVFDGAKEADVNEALTKAGFETSGQSTLYDGRSGETFARKVTVGMKYLLKLHHL
VDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
AGRTKVYEAIVKGEENFEAGVPESFNVLVKEIRSLGLNVELLDSGTE
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atggctcagacgtattccggccgcaagcgcattcggaaattctacggcaagatcgcggaa
gtcgcgaaaatgcccaatctcatcgaggtccagaaaagctcctacgacctcttcctgaaa
tccggcgatgcagccaccccgaccgacggggacggtatccagggcgtcttccagtcggtt
ttcccgatcaaggatttcaacgagaccgcggttctcgagttcgtccgctacgagcttgag
catccgaagtatgacgtcgaggaatgtcagcagcgtgacatgacctacagcgcgccgctg
aaggtcaccctgcgcctgatcgtcttcgaggtggaccccgataccggcgcccgctccgtg
aaggacatcaaggaacaggacgtctacatgggcgacatgcccctgatgacctccaacggc
acctttgtcgtgaacggcaccgagcgcgtgatcgtgtcgcagatgcatcgctctcccggc
gtgttcttcgaccatgaccgcggcaagacccactcctccggcaagctgctcttcgcctcc
cgcgtgatcccctaccgcgggtcctggctggatttcgagttcgacgccaaggacatcgtc
ttcgcccgcatcgaccggcgccggaagcttccggtgacgacgcttctctatgccctgggt
ctcgaccaggagggcatctgcgacgcgttctacaagaccatgaccttccgtcgcgagcgt
tccggctgggcggcgcccttcttccccgagcgcatccgcggctccaagcccgcgcatgac
atcatcgacgccgcctccggcgaggtgatcgccgaggccggcaagaaggtgaccccgcgc
accgtcaagcagctcatcgacgaaggcaaggtgaccgagatcctcgtgccctacgagggc
atcctgggccgccacatggccaaggacctggtgaaccccgagaccggcttcatctatgcc
gaggccggtgacgagatcaccgacaagcttctccaggagctgatcgacgccggctacgac
gaagtgccgacgctggacatcgaccatgtgaacgtgggtgcctacatccgcaacaccatg
gccgcggacaagaactacaaccgcgagagcgcgctcatcgacatctaccgggtgatgcgc
ccgggcgagccgcccaccgtggaagccgcggacgcgatgttctcgaccctgttcttcgac
cccgagcgctacgatctctcggccgtcggccgggtgaagatgaacatgcgtctcgacctc
gacgcgccggacaccacccgtgtgctgcgcaacgaggacatcatcgccgtgatccgcgcg
ctggtggacctgcgcgacggccgtggcgagatcgacgacatcgaccatctcggcaaccgg
cgcgtgcgctcggtcggcgagctgatggagaaccagtaccgcgtcggcctgctgcgcatg
gagcgcgcgatcaaggagcggatgtcctccgtcgagatcgacacgatcatgccgcaggac
ctgatcaactcgaagccggccgccgcggccgtgcgcgagttcttcggttcctcgcagctc
agccagttcatggaccagaccaacccgctctccgaggtcacgcacaagcggcgtctctcg
gcgctcgggcccggcggcctgacccgtgagcgtgccggcttcgaggtgcgcgacgtgcac
ccgacccactacggccgcatgtgcccgatcgagacgccggaaggcccgaacatcggcctg
atcaactcgctcgcgtccttcgcccgcgtgaacaagtatggcttcatcgagaccccgtac
cgaaaggtcgacaacgggcaggtgaccgatgaggtcatctacatgtccgcgaccgaggag
atgaagtacacgatcgcccaggcgaatgcccagctggacgagaatggccgcttcatcaac
gacatggcctccacccgcaagggcggggagttccagctcgccccgatcgaccacatcgac
tacatcgacgtgtcgccgaagcagctcgtgtccgtcgcggcctcgctgatcccgttcctg
gagaacgacgacgccaaccgcgccctgatgggttcgaacatgcagcgccaggcggttccg
ctgctgcgcgccgaggcgcccttcgtgggcaccggcatcgaggaagtggttgcgcgcgat
tccggtgcggccatcaccgcgcggcgcggcggcgtgatcgatcaggtcgacgccacccgt
atcgtcgtgcgcgtgacggacgagatggcggagccgggcgatccgggtgtggacatctac
cgtctgcgcaagttccagcgctcgaaccagaacacctgcatcaaccagcgcccgctggtg
aaggtgggtgacacggtgcgtgccggcgacgtggtggccgacggcccgtccaccgacctc
ggcgagctggctctcggcaagaacgtgctcgtcgcgttcatgccgtggaacggctacaac
tacgaggactccatcctcatctccgagcgcatcgtgaaggacgacgtgttcacctcgatc
cacatcgaggaattcgagatcgcggcgcgagacaccaagctcgggcccgaggagatcacc
cgcgacattccgaacgtcggcgaggaagccctgcgcaacctcgacgaggccgggatcatc
tacatcggcgccgaagtggggccgggcgacatcctggtcggcaagatcaccccgaagggc
gaaagcccgatgacgccggaggaaaagctcctccgcgccatcttcggcgagaaggcggcg
gatgtgcgcgacacttccatgcgcatgtcgccgggggattacggcacggtcgtggaagtt
cgcgtgttcaaccgtcacggcgtggacaaggacgagcgtgcgctgcagatcgagcgcgag
gagatcgagcggctgacccgtgaccgggccgacgagctcgccatcctcgagcgcaacatc
tacgcgcgtctgaaggacctgatcctcggcaagccggcggtgaagggcccgaagggcgtg
aagtccggctccgagatcaccgagaacctgctgggcgagctgtcgcgcggccagtggtgg
cagctggtgatcggcgacgaggccgagcaggcgaagatcgaggcgctcaacaagcagttc
gacgcgcagaagaaggtgctcgaccgccgcttcgaggacaaggtggagaaggtgcgccgc
ggcgacgatctcccccccggcgtgatgaagatggtcaaggtgttcgtcgcggtgaagcgc
aagctgcagcccggtgacaagatggccggtcgtcacggcaacaagggcgtcatctcccgc
gtggtgccggaggaggacatgccgttcctcgccgacggcaccccggtggacttcgtgctc
aacccgctcggcgtgccgagccggatgaacgtggggcagatcctggagacgcacatgggc
tgggccgcgcgcggcctcgggctcacggtgcagaccgcgctcgacgagtaccggtccaag
ggcgacatgaccccggtcaaggacgcgctgaagttcgtctacggtgacgagacctacaac
gacgcgaccgccgacatgaccgatgccgagctgctcgaggctgcgggcaacgtgacccgc
ggtgtgccgatcgccacgcccgtcttcgacggggcgaaggaagcggatgtgaacgaggcc
ctcaccaaggcgggcttcgagacctccggccagtcgaccctctatgacggtcgctcgggc
gagaccttcgcgcgcaaggtcaccgtgggcatgaagtacctgctcaagctccaccacctc
gtggatgacaagatccacgcacgttcgaccgggccctacagcctcgtcacgcagcagccc
ctgggcggcaaggcccagttcggcggccagcgtttcggcgagatggaggtctgggcgctc
gaagcctacggcgccgcctacaccctgcaggaaatgctgacggtgaagtcggacgacgtg
gcgggccgcaccaaggtctacgaggcgatcgtgaagggcgaggagaacttcgaggccggc
gtgcccgagagcttcaacgtcctcgtgaaggagatccgctcgctcggcctgaacgtcgag
ctgctggattccggtaccgaatga
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integrated database retrieval system
