Podospora pseudoanserina: QC764_211400
Help
Entry
QC764_211400 CDS
T09816
Symbol
exo2
Name
(RefSeq) exonuclease II Exo2
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
ppsa
Podospora pseudoanserina
Pathway
ppsa03008
Ribosome biogenesis in eukaryotes
ppsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
QC764_211400 (exo2)
09123 Folding, sorting and degradation
03018 RNA degradation
QC764_211400 (exo2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsa03019
]
QC764_211400 (exo2)
03009 Ribosome biogenesis [BR:
ppsa03009
]
QC764_211400 (exo2)
03016 Transfer RNA biogenesis [BR:
ppsa03016
]
QC764_211400 (exo2)
03036 Chromosome and associated proteins [BR:
ppsa03036
]
QC764_211400 (exo2)
Messenger RNA biogenesis [BR:
ppsa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
QC764_211400 (exo2)
mRNA degradation factors
5'-3' decay
5' exonucleases
QC764_211400 (exo2)
Ribosome biogenesis [BR:
ppsa03009
]
Eukaryotic type
Pre-60S particles
RNases
QC764_211400 (exo2)
Transfer RNA biogenesis [BR:
ppsa03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
QC764_211400 (exo2)
Chromosome and associated proteins [BR:
ppsa03036
]
Eukaryotic type
Gene silencing
piRNA pathway
QC764_211400 (exo2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
R3H
Motif
Other DBs
NCBI-GeneID:
87965710
NCBI-ProteinID:
XP_062803717
LinkDB
All DBs
Position
2:4211917..4217205
Genome browser
AA seq
1417 aa
AA seq
DB search
MGVPKFFRWLSERYPAISQLIAENRIPEFDCLYLDMNGIIHNCTHKDSDDVQQARISEEQ
MFIAIFNYIEHLFGKIKPKTLFFMAIDGVAPRAKMNQQRARRFRTALDAERARDKAIQEG
KELPKEPPFDSNCITPGTEFMAKLTQQLKYFINKKVSEDKDWQGPEIVLSGHEVPGEGEH
KIMEYIRNARAQPDYNPNVRHCLYGLDADLIMLGLLSHDPHFCLLREEVQFGRVKDQHKV
KELEHQNFYLMHLCIVREYLELEFQELKVPGAIPMPFDMEKVIDDFILMAFFVGNDFLPN
LPRFHINEGALATMFKIYKEVLRKCDGYINENGRVNLKRLAILLEELGREEYRFFEHENE
DAGWLRGKKMLEHDEAEIARARVKGKLIISSDQKTLWKTKIRKFLTNRNSQTLDLGTGLN
AADRKFVQDLADAAHIEWATKEDDDGRRHLILTFPVRDDEDEEDEEAQSASLRIVKKYDS
AQVLDLTGADAQSAMEAKYKQKFQEWKDGYYKDKFPEWAEGKHEDELRKLAENYVQGLQW
VLFYYYRGIASWPWFYRYHYSPLVSDVVKGLGADLNFTLGQPFRPNEQLMGVLPDRSKSI
VPTVYWPLMTDKDSPIIDFYPRDFELDMNGKKMDWEAVVKIPFIDEKRLLDAMAPKNDLL
SDEEKARNDFGVALKFTYSPDVDFEYASSLVDVFPHIPHCHCVENIFDLPPVEGLEYRAG
LTDGALLNAEALAGFPSLATLPYTASLGFHGVNVFKQDSRNESMVVNLIGTEMRTKVESA
KVKLGQRCFVGYPFLQEAKIVGVSDELFDYVLDGNGQVATLHHGHREIEEFGKKANKIEN
FYSKRMGILIGPVESLVRVQMLKGLIKTDEGATIKEYGDIPGMETDYASQIIVDEVANED
ERFIEKAALPLEEEFPVKSIGFFLGDFNYGQPLEVSGYTNGKLQVWLATLESREPDFAKR
IIYESERGNSYMPSYMVAKQLDLHPLALSKITSSYFVKTVGDLRVNLGLNLKFEGKKQKV
LGYSRKSQTGWEFSSAAVHLIVQYMTNFPDFFAGVKRNPSGAELKETDLWSDPNLATARV
KEIGAWLKTLKTNSMERVPLDAEQLDSEVVMRIAAEADSLKLSAIPTVPKKMNGVPRNAL
LRPDDAEHRLGNQHFALGDRVVYVARTGKVPIAFRGTVVGISRTPTAKLLDVVFDVTFMS
GTTLGGRCPPFRGQTVPSTTLLNLTGRQVVAGSKNQLARQPVTPSVTTLTTHGGYHMHQG
KRLQDAGAPSQAAWGRGGRGGRGGGRGGYGGPSQDGSNGSASAPPMYGAVPPPSSLDAPR
GGRARGRGRGNGGQRGGQQHNNLAFRPAPQQQQQQVDGQNGENSRGGRGGRGGFRGAPYA
GRGRGGPRGGARGGQGQGQGQQQQQHQQSVAIPPSAS
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttcccaagtttttcagatggctctctgagcgttacccggcgatatcgcaactc
attgccgagaatcgaattcccgagttcgactgcctctacttggatatgaatggtatcatt
cataattgtacccacaaggactcggatgatgttcagcaggcccgtatcagcgaagaacaa
atgttcatcgctatattcaactatatagaacatctcttcggtaagatcaaaccgaagacg
ctgttcttcatggccatcgatggtgtcgccccgcgcgccaaaatgaaccaacagcgtgct
cgtcgcttcagaactgctttggacgctgagagggcccgtgataaggccattcaggagggc
aaagagttgcccaaggagccaccgttcgactccaattgcatcacgccaggaactgagttc
atggccaagcttacccagcagctcaagtacttcatcaacaagaaggtgtctgaagacaag
gactggcagggccccgagattgtcctgtcagggcatgaggtccctggtgagggtgagcac
aagatcatggagtacatccgcaacgcacgcgcgcaaccggactacaaccccaacgtccgc
cactgcttgtacggcctcgatgccgatctcatcatgttgggtctcctgagccatgaccca
cacttctgcctcctccgagaagaggttcagtttggccgcgtcaaggaccagcacaaggtt
aaggagttggagcatcaaaacttttacctgatgcatctctgcatagttcgagagtacttg
gagctggagttccaagagctcaaagtaccgggcgcaatccccatgccgttcgatatggaa
aaggtcattgatgacttcatcttgatggccttctttgtgggcaacgatttcttgcccaat
cttccgcgctttcacatcaacgagggtgcgttggccaccatgttcaagatttacaaggag
gtgcttcgaaagtgtgatggatacatcaatgaaaatggcagagtgaatctcaagaggcta
gccattctcttggaggagcttgggagagaagagtaccggttctttgagcatgaaaacgaa
gatgccggctggctgcggggcaagaagatgcttgaacatgacgaggccgagattgccagg
gctcgtgtcaagggcaagctgatcatcagctcagatcaaaagacgctgtggaagacaaag
attcgaaagtttctgaccaaccggaattcgcaaactctcgatctcggcaccggcctaaat
gcggccgaccgcaagttcgtccaggatctggctgatgctgcgcacattgagtgggctact
aaggaggacgacgatggacgtcgtcaccttattttgaccttccctgtgagagacgacgaa
gacgaggaggacgaggaagcgcagtcggcatctcttcgcattgtgaagaagtacgacagt
gcccaagttctcgacctgacaggtgccgatgcccaatccgccatggaggccaagtacaag
caaaagttccaagagtggaaggacggctactacaaggacaagttccccgagtgggccgag
gggaagcacgaagatgagttgcgcaagctcgcagaaaactacgttcaaggtcttcagtgg
gtgctcttctactactatcgtggaattgcgtcatggccgtggttctaccgctatcactac
tcccctctggtctcagatgtcgtcaagggtttgggtgcagacctcaacttcaccctgggc
cagccgttcaggccgaacgaacagctcatgggtgtcttgcccgaccgcagtaaaagcatc
gtgcctaccgtatactggcccctcatgacggacaaggactcgcccatcatcgatttctat
ccccgggatttcgagctcgacatgaacggaaagaagatggactgggaggccgtcgtcaag
atccccttcattgacgaaaagcgcctcctcgacgccatggctcccaaaaacgatcttctt
tccgacgaggagaaggcacgcaacgacttcggtgtggccctcaagtttacgtattctcca
gatgtcgattttgagtatgcctcatccttggtggatgttttcccgcacatccctcactgt
cactgtgtcgaaaacatctttgatcttcctccggtcgaaggtcttgagtaccgcgccggc
ctcaccgatggcgctctgttgaatgccgaggctttggctggattcccatctctcgccacc
ctgccttatacggctagccttggcttccatggagttaatgtgttcaagcaagacagccgc
aacgaaagcatggtggtgaacctcatcggcaccgagatgagaaccaaggtcgagagtgcc
aaggtcaagcttggacagcgctgctttgttggttatcctttcctccaggaggccaaaatt
gttggggtgtctgatgaactcttcgactatgtcctcgacggaaacggtcaggtggccacc
cttcaccatggccatcgtgaaatcgaagagtttggcaagaaggccaacaagattgagaac
ttttacagtaagcgtatgggtatcttgattggccctgtcgagtccctggtcagggtccaa
atgttgaagggtctgatcaagaccgacgagggcgcgacaatcaaggagtacggcgacatc
ccgggcatggagacggactatgcttctcagatcattgtcgacgaggttgccaacgaggac
gagcgctttatcgaaaaggccgccttgccgcttgaggaagagttccccgtcaaatcgata
ggtttcttcttgggcgacttcaactatggtcagccattggaagtatctggctacaccaac
ggaaagcttcaggtctggcttgccacccttgaaagccgggagcctgactttgcgaagcgc
atcatttacgagtcggagcggggcaattcttacatgccatcctacatggtcgccaagcag
ctcgatttgcaccccttggcgctcagcaagatcacctcatcttactttgtcaagacggtt
ggtgatcttcgcgtgaacttgggtctcaacctcaaatttgagggtaagaagcagaaggtg
cttgggtactctcgcaagtctcagaccggttgggagttcagtagtgctgccgtgcacctg
attgttcagtacatgaccaacttccccgactttttcgccggtgtcaagaggaacccttcg
ggcgccgagttgaaggaaactgatctctggagtgaccctaatctggccacagcccgggtc
aaggaaatcggtgcctggctcaagacgctcaagaccaactcgatggagcgcgtccctctt
gatgccgagcagctggactctgaggtcgtcatgaggattgctgcggaggctgacagtctc
aagctcagcgctattcctactgttcccaagaagatgaacggcgtgcccaggaatgcgctt
ttgaggcccgacgatgccgaacatcgcctgggcaaccagcacttcgccttgggagaccgc
gtggtgtacgttgcccgcaccggcaaggtccccatcgccttccgcggcactgtggttggt
atcagccgcacccccacggccaagttgttggatgttgtctttgacgtcacgttcatgagc
ggcactactctcggtggccgctgtccgccgttccgcgggcagactgtgccgtctactact
cttctcaaccttaccggacggcaggttgttgccggttccaagaaccagctcgctcgccag
cccgtcacaccatcagttaccaccttgactactcatggcgggtatcacatgcaccagggc
aagcgtctgcaagatgccggtgctccttctcaagctgcttggggacggggtggacggggt
ggtcgcggcggtggcagaggtgggtacggtggacccagccaggacggcagcaatggttct
gcttctgctccgccgatgtatggggctgttccgcccccttccagccttgatgctcctagg
ggaggaagagcgcgcggacgtggtcgcggcaatggtggtcagaggggagggcaacagcac
aacaaccttgccttccgccctgcgcctcagcagcagcagcagcaggttgatggtcagaat
ggggaaaattcacgtggaggccgtggcgggagaggtggctttagaggagcgccttatgct
ggccggggcagaggtggtcctcgtggtggcgctcgaggtggccagggtcagggtcagggt
cagcagcagcagcagcatcaacaaagcgtggcgattcctccttccgcgagctag
DBGET
integrated database retrieval system
