Paenibacillus psychroresistens: EHS13_01090
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Entry
EHS13_01090 CDS
T06328
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ppsc
Paenibacillus psychroresistens
Pathway
ppsc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppsc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EHS13_01090 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppsc03021
]
EHS13_01090 (rpoB)
03400 DNA repair and recombination proteins [BR:
ppsc03400
]
EHS13_01090 (rpoB)
Enzymes [BR:
ppsc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EHS13_01090 (rpoB)
Transcription machinery [BR:
ppsc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EHS13_01090 (rpoB)
DNA repair and recombination proteins [BR:
ppsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EHS13_01090 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QGQ93609
UniProt:
A0A6B8RAG6
LinkDB
All DBs
Position
231836..235369
Genome browser
AA seq
1177 aa
AA seq
DB search
MAGHIVQFGRRKRRSYARIREVLDIPNLIEIQQKSYEWFLEEGLREMFQDISPIQDFTGN
LVLEFIDYSLGDPKYTVDDSKERDVTYAAPLRVKVRLFNKETGEVKEQEVFMGDFPIMTD
TGTFIINGAERVIVSQLVRSPSVYFSTKIDKNGKKNYTATVIPNRGAWLELETDAKDIIY
VRIDRTRKIPVTVLLRALGFGTDAEIIDLLGDDEYIRNTLDKDNTDSTDKALIEIYERLR
PGEPPTLDNARSLLVARFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAETLFDPETGE
IIAEAGQSLDRRLLDEILPHLEKGVGFKQYIVHGGVTETDKIPMQAIDVYSPIEEGKVIK
VIANGTIDKGVKNITPADIISSINYFINLLHGIGSTDDIDHLGNRRLRSVGELLQNQFRI
GLSRMERVVRERMSIQDANVITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTH
KRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTFARINEYGF
IEAPYRWVDPKTGVVTEKISYVTADEEDNYIVAQANAELGEDNRFANETVIVRFRGDNLY
VPRDRVDYMDVSPKQVVSVATALIPFLENDDSNRALMGSNMQRQAVPLLIPRSPLVGTGM
EHKAAKDSGVCVVSKCDGVVERVSANEITVRRQELVDGKLVSGNLVKYKLHKFIRSNQGT
CINQRPLVYRGEVVKTGDILADGPSTEQGELALGRNVVVAFMAWEGYNYEDAILLSEKLV
KEDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEIGAGDIL
VGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDGIVVDVKVFTRENGDELP
PGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVIARILPEEDMPFLPDGTAVEVVLNPLGV
PSRMNIGQVLEVHLGFAAKLLGIHTATPVFDGARENDVFDTMEEAGMQRSGKTKLYDGRS
GEEFEREVTVGVMYMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENVPEPGVPESFKVLIKELQSLGMDV
KILSATEEEIEMRDLDDDEIANDKLNLNLEGAELGME
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
ttggcgggacatattgttcaattcggacgacgtaaacgcaggagttatgcacggattcgt
gaagtgctggatattcctaacctgatcgaaattcaacaaaaatcatatgaatggtttttg
gaagaaggattgcgcgaaatgttccaggatatttctccgattcaagacttcacagggaat
ttagttttagaattcattgattatagcttgggcgatcccaagtatacggtggatgactcc
aaagaacgtgacgttacttatgctgcgccattgcgagtcaaagtacgtttatttaataaa
gaaaccggtgaagtgaaagagcaagaagttttcatgggtgatttccctattatgaccgat
acaggcacattcattattaatggtgcagaacgtgttatcgttagtcagctagttcgttct
cctagcgtttattttagcacaaaaatcgataaaaatggtaagaaaaattacacagcaaca
gtcatccctaatcggggtgcttggcttgaattggaaacagatgcgaaggacattatttat
gttcgtattgatcgtacgcgtaagattcctgtcactgttttattgcgcgcattgggcttt
ggaacagatgctgaaattatcgatttgcttggtgatgatgagtatattcgtaatacgctt
gataaagataacacggattcgacagacaaagcattgattgaaatctatgaaagattgcgt
ccaggtgagccgccaacattagacaatgcaagaagtctacttgttgcacgcttttttgac
cctaaacgttatgatcttgccaatgttggtcgttacaaaatcaacaaaaaactgcatatt
aaaaaccgtttgtttaatcagagattagcagaaactttgttcgatcccgaaacaggtgaa
attattgcagaagcaggacaatccttggatcgtcgtcttttggatgaaattttgcctcac
ttggaaaaaggtgtgggctttaagcaatatatcgtacatggtggcgtaacggaaacggat
aaaatccctatgcaagccattgatgtatattcaccaattgaagaaggtaaagtaattaag
gttattgcaaatggaacgattgataaaggcgtgaagaatatcacacctgcagatatcatt
tcatcgattaattatttcattaatctattgcatggtattggatctacggatgatattgat
cacttaggtaatcgacgtcttcgttcagttggggagcttctacagaatcaattccgtatc
ggtttatcccgtatggaacgggttgttcgtgagcgtatgtcgattcaagatgctaatgtt
atcactccacaggccttgattaatatacgtccagttattgcttcaattaaagagttcttc
ggaagctcacaattgtctcaatttatggatcagacgaatcctttggctgagctgacgcat
aagcgtcgtctatctgccctagggcccggtggtttgacgcgtgaacgcgcagggtttgaa
gtgcgtgacgttcattactctcactatggtcgtatgtgtccaattgaaactcccgaaggt
ccgaacattgggttgattaactccttgtccacttttgctcgtatcaatgaatatggtttt
attgaagcaccttaccgttgggttgatcctaaaacaggagttgtaactgagaaaatttct
tatgtaacagctgacgaagaagacaactatattgttgctcaagcaaatgcagagctaggc
gaggataatagatttgcgaatgaaaccgtcattgttcgtttccgaggggataatctttat
gtaccgcgggatcgtgtcgattatatggatgtttcacctaagcaagttgtatctgtagca
acagcgctgattcctttccttgagaatgatgactccaaccgtgctctaatgggatcaaac
atgcagcgtcaagccgtacctttacttattccgcgttcccctttagttgggacagggatg
gagcataaggctgctaaggattcaggcgtgtgtgttgtttctaaatgtgatggtgttgtt
gaaagagtttcggctaatgaaattacggttcgtcgtcaagaattagtggatggcaagcta
gttagcggaaatcttgttaaatataaattgcataagtttatccgttcaaatcaaggcaca
tgtatcaaccaacgtcctctcgtctatcgtggagaagtcgttaaaacgggagatatcttg
gctgatggaccttcaacggagcaaggtgaattagcattagggcgtaacgttgtcgtggcc
ttcatggcatgggaaggctacaactatgaggatgcgattcttctaagcgaaaagttagtt
aaagaggatgtttatacctctatccatattgaagagtatgagtccgaagcccgtgatacg
aagcttggacctgaagaaatcacacgtgatatcccgaatgtcggcgaagatgcattacgc
aacttagacgaacgcggaattatccgggtcggtgctgagattggtgcaggcgatattcta
gttggtaaagtaacccctaagggagttaccgaattaacagcagaagaacgcttattgcat
gcgatttttggtgaaaaagcaagagaagttagagacacttcacttcgcgtgccgcatggt
accgatggaattgttgtggacgttaaggtctttacccgtgagaatggggatgagcttcca
ccgggtgttaatcaactcgtacgtgtttatattgcccaaaagcggaaaatatccgaaggg
gataaaatggcaggacgtcatggtaataaaggggttattgcccgaatcttacctgaggaa
gatatgccgttcctaccggatggtactgcagttgaagttgtcttgaatccactaggtgtt
ccttctcgtatgaacattggtcaagtacttgaagtgcatctaggctttgctgctaaattg
ttaggtattcataccgctactcctgtatttgatggagctcgtgagaatgacgtatttgac
actatggaagaagccggtatgcaacgtagtggtaagaccaagctttatgatggtcgcagt
ggtgaagagtttgaacgtgaagttacggttggggtcatgtatatgatcaagctggcacat
atggtcgacgataaaatccatgcacgttccacaggtccttactctcttgttacacaacaa
ccattgggcggtaaagctcaatttggtggtcaacgtttcggggaaatggaagtttgggca
ttggaagcttacggcgcagcctatacactgcaagaaattttgaccgtaaaatcggatgat
gttgtaggtcgcgtcaaaacgtacgaatcgattgttaaaggcgagaacgttcctgaacca
ggtgtgcctgaatcgtttaaggttctaataaaagaactacaaagcttgggaatggacgta
aaaatcttgtctgcaaccgaggaagaaatcgagatgcgtgatctagatgatgatgaaata
gccaatgacaagctgaacttgaatttagagggcgcagaattgggtatggagtaa
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integrated database retrieval system
