Podospora pseudocomata: QC762_408360 Help Entry QC762_408360      CDS       T09797                                  Symbol CDC39 Name (RefSeq) CCR4-NOT core subunit cdc39   KO K12604   CCR4-NOT transcription complex subunit 1 Organism ppsd  Podospora pseudocomata Pathway ppsd03018   RNA degradation Brite KEGG Orthology (KO) [BR:ppsd00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     QC762_408360 (CDC39)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ppsd03019]     QC762_408360 (CDC39) Messenger RNA biogenesis [BR:ppsd03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      QC762_408360 (CDC39)   mRNA degradation factors    3'-5' decay     Ccr4-NOT complex      QC762_408360 (CDC39) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Not1 CNOT1_CAF1_bind DUF3819 CNOT1_TTP_bind CNOT1_HEAT ARM_Cnot1 Motif Other DBs NCBI-GeneID:  87910197 NCBI-ProteinID:  XP_062743641 LinkDB All DBs Position 4:complement(2162754..2170765) Genome browser AA seq 2201 aa AA seqDB search MVPHSKKGTFTPNPNSASQPLHTGLAHSQSPSHHHGALSSGANPSTSSPTGSSSLAKIAV AQVLLLLSTIKEDKGDPRRWKSQTDALQKLIHEHGMDVYSRYFTRLVASNASQIFPGAGR PVANSNNNNMQLLVAEMELLARDFSQARKIAESIETGTEDIFHNFDLSTFMEHFQLDALE KTLLALAFKLGSRADLKTKADAVLSTNYPTFVNILSRPTGEHMDMPAEFVAELLDRFIQL HPPNFNAAAKKELEYKVSMRYSQGGDGKPPPSQVLAALDLIRLLADRPPNALALYIYRVG SAFTKDEETCVSYLQNRPSNIQLSEEQVSAALLYTTISQTPPHKPSILVAALRRILPDSF QWQDVVSYFDHANARVTSAQFLRLYNALLPIALEHLDRFNIQRLWGGEWENPETQLSFIC AYASLTPEQLDATTIPGLKPTFTVDEYVQSDRAIQEIAALAVRHPLVSEAALSAVFNVAL HSMHASQSTEAKRLFQDVVVPNLHVFVTSAFGVPKPWPTMAEETLASLFEGFLINKTPTS DFVMESLWRRDKVWVMQRLEEQHALKPIVLPTIFEFAVRHKWLQELVFLPTGFGLDLVAY AHAQGFLNLEQWASQNAERPGEMARAINQFLLIKTNLEQTYQRSGDNGQAHTPLQVKTVY MMLDILDRFNLKAPVVDLIHVQRHCITAYPRLINYGEGYDDIIDDNGRGGNMLAPAATTR MEEHYKKMYGDELQVRSVVEVLEHYKHSRVPLEQDIFACMIHGLFDEYAHYVDYPLEALA TTAVLFGGIISHKLISRLPLKIGLGMILQAVKENRPEEPMYKFGLQALMQLFGRLREWPA FCKDLILIPGLQGTEAYRKAEEVVREHDEELARTLRNGLPAIAGSDKQLTNGGLEDSLSS EQHPPPFLSINVGPPPAGINYEDPTPDAQGKIQFALNNATDTTLQSIFKELQKMLDVKHQ QWFASHLVEERAKMQPNYHHVYLELVKQFEDRLLWTEVLRETYVSVQRMLNSEQTQSNST ERTHLKNLGGWLGLLTLARDKPIKHSNIAFRQLLIEALDTKRLIVVIPFVCKVLTQAASS NVFKPPNPWLMDIIHLLIELYHNAELKLNLKFEIEVLCKCLDLDHEAIEPSGEILNRPPL EDVGDLVGPDNLDSFESLSLNGMTGVNSSLVSHPALAIPDLGPNLSVPSTEVVSAAKLHD IVRQALTRALQEIIQPVVDRSVTIAAISTQQMIRKDFATEGDPDRVRMAAVNMVKSTAGS LALVTSKEPLRANFTNYLRQLASELPQGLPEGIIMLCVNSNMELASSIIEKSAEERGVPE IEDLLAEDLEARRHHRINRPNDPFMDPRLNRWAWTIPAPFKLQPSLSGLNDEQMAIYDDF ARQSRVTAAAAAAAAAAAAASVTPSHVPSSSDARSIANEVLGDQYNSVSTIPTPAETPSL PHMGVQPQHYPPVHAGMVNGRQPGISPVDARNVAERVNSLLEKLATAVSNTAEEHFEDLP RTHEVINIHDAVVQLTIKTQQTSDEFAVYVATQISGLLFRPQPEPTSLLLETLVHVLETL RKVAGPATSQQIRWLFYQQSGSTFLNLPLILALLRTDLIDWHSIDAAMAKALNERSSGSI EFLESLMDLTLFSEAPVNLYTDFVQSLEEAWAWITEEPEVPGGQRFKAKVLGPSPEIHPD RTPEAQFEQFDYIFEEWVQLCNNDCASEKAATKFVQQLNWRRHIVTKEDFFVFARQAIDK SVDRAEQSGHLGEGFSNESFQAVDALVKMILIFTQSHDAPGTSESSRVAFLDSVLALGVL VLNNHHVRRGDAFNPRVFFRFFSNLFHQIMNLTERFSDSESEKIVLNFAARLWDLRPVVY PGFLFQWMGLLAHRAFLPAVMRMPNQAGWEPFTKLLTHLFSYLGNMLKAFEVSLAAKDLY SGTVKLVAVLFHDFPEYLSANHVQLCQCLPSHATQLINMILSASTTPFDKVPDPFRPGLK IDRIPEMKDPVVSLYDCAGQLKELGLYDILEQSLQNGPSEDAIAQITHAMHHADTDLTTF GFVPVNVDRRVVDAVVSHIANAASQRAVNNSDAPVFVSGAPDVKTLHMLVTEVPAETRYY LLSSMVNELRFANASTNYFSHAIVEIFGHDLDDPEETEIRQQIVRVLLERMVGYWPQPWG LVVTILELLKNEKFHFFELPFIKAAPEVAARFEAILRPVVA NT seq 6606 nt NT seq  +upstreamnt  +downstreamnt atggtcccccactccaagaagggaaccttcacacccaatcccaattctgcctcccagccc ctccacactggcctcgcccactcgcagagtccctcccatcatcacggtgcgctgagttcg ggtgccaaccccagtaccagcagccccactggctccagctccctggccaagattgcagtt gcccaggttctcctgctcctgagcaccatcaaagaggacaagggcgatccgagaaggtgg aagtcacagactgacgctttgcaaaagcttatccatgagcacggcatggatgtctattcg agatacttcacgcgcctggtggcctccaatgcctctcagatcttccccggcgcggggcgg ccagtagcgaattccaacaataacaacatgcaactcctcgttgccgaaatggagctgctt gccagagacttcagccaagcgaggaagatcgccgagtcgatcgagaccggcaccgaagat atattccacaattttgacttgtcgacttttatggaacacttccaactcgatgccctcgaa aagacactgttggccctggccttcaaactaggtagcagggctgacctgaagaccaaagcg gatgccgttttgtctaccaactacccaacctttgtgaatatcttgagtcgaccgactggg gaacacatggacatgcccgccgaattcgttgccgaactgctcgaccgattcatacaactt cacccgccaaacttcaatgctgccgccaagaaggagttggagtacaaggtgtcgatgcgg tattcacaaggaggagacggaaagccgcccccctctcaggttctggcggccctggacctg attcgcctcctcgccgacaggccaccgaatgcactggccctctatatttaccgtgtcggg tcagccttcaccaaggacgaggagacatgcgtgagctacctccagaaccgaccttccaac atccaactgtccgaagaacaagtatctgccgcgcttctgtacaccaccatcagccagacc ccgccacacaaaccctcgattctcgttgcggccctgaggcggatactgcccgacagcttc cagtggcaggatgtcgtttcgtatttcgaccatgcgaatgcacgcgtaacttcggcgcag tttctgcggttatacaatgcattattacccatcgcgctcgagcatctcgacaggttcaac attcaacggctgtggggcggagaatgggagaatcccgaaacccagctgtccttcatttgc gcctatgcctcactcaccccggagcaactggatgccaccaccatcccaggcctcaagccg acgtttacggtggacgaatacgtacaatccgaccgggcaattcaggaaatagctgccctc gctgttagacatccactggtctccgaggctgctttgtctgctgtcttcaatgtggctctg cactcgatgcatgcctcacagagcacagaggcgaagcgcctgtttcaagacgtcgttgtg cctaatctacatgtctttgtcacctcagcctttggggttcctaagccgtggcccacaatg gccgaagagacgctggcgtcgctattcgaggggtttctgatcaacaagacaccgacctcc gactttgtgatggaaagcctctggagacgggacaaggtgtgggtcatgcagcggctggaa gaacagcatgctctcaagcctattgtcttgccaaccatcttcgagtttgcggtgaggcac aagtggctccaggagctggttttccttcccactggcttcgggcttgatctcgttgcctat gcgcatgcgcaaggttttctgaacttggagcagtgggcaagccagaacgctgagcgaccc ggcgagatggccagggccataaatcagtttctgttgataaaaacgaacctggagcagacg tatcagcggagcggagacaatggacaagcccacacacccttgcaggtcaaaacagtctat atgatgctcgacattttggacaggttcaacctgaaagcccctgttgtggatctgattcat gttcagagacactgcataacagcttacccccgcctgattaactatggagaaggttacgac gacatcatcgatgataatgggcggggcgggaatatgcttgcaccagcagccacgaccagg atggaagagcactacaagaaaatgtacggcgatgaattgcaggttcgcagtgtggtcgag gttctcgaacactacaaacattcgcgtgtgccgctggagcaggacattttcgcgtgcatg attcacggtctgtttgacgaatacgcccattatgtcgactatcctctcgaggccctcgcc actacagcagtgctcttcggtgggataatctctcacaagttgatatcgagactcccactc aaaattggtttgggtatgatcttgcaggccgtcaaagagaatcgtcccgaggagcccatg tacaagttcggtcttcaggcgctcatgcagctctttggccggctgcgggaatggcctgcg ttctgcaaggacttgatcctgatacctggactacagggaacggaggcgtacaggaaggcg gaagaggtggttcgcgagcatgacgaggagttggcccgaacccttcgcaacggtcttcca gccatcgccggcagtgacaagcaactgaccaatggcggtctggaggacagtctcagctcg gaacagcaccctcccccgttcctgtccatcaatgttggcccacctcccgccgggatcaac tacgaagaccccacgcccgatgcccagggcaaaatccagtttgctctcaataacgccacc gacacgaccctgcagtcgatattcaaggagctccagaagatgttggatgtcaagcaccag cagtggttcgccagtcacctggtggaggagcgcgccaagatgcagccgaactatcaccat gtctacctcgagctggtgaagcagtttgaggataggctgctgtggaccgaagttctgagg gagacctatgtcagcgtccagcgcatgctcaactcggagcagacgcaatcgaattcgacc gagaggactcacctcaagaatctgggtggctggcttggcctgttgacccttgctcgtgac aagcctatcaagcacagcaacatcgccttcaggcaactcctgatcgaagccctcgatacc aagcgtctcattgtcgtcatcccctttgtctgcaaggtcttgacccaggcagccagctcg aacgtgttcaaaccgccgaacccctggctcatggacattatccacctcctcattgaactc tatcacaacgccgagctcaagctcaatctgaagtttgagatcgaggtgctctgcaagtgc ctcgatctcgatcatgaggcgatcgagccatctggtgagatcttgaaccggcctcctctc gaggacgtgggtgacttggttgggccagataatctcgacagttttgagagcctatccctc aacggcatgacgggagtgaacagctcacttgtctcgcacccggctcttgccatccccgac ttggggcccaacctgagcgtcccgtccaccgaggttgtcagcgccgcgaagctgcacgac attgtccgtcaagctctcacgcgcgcgctgcaagagatcatccagcctgttgtggatagg tctgtgaccatcgccgccatctctacgcagcaaatgatccgcaaggacttcgcaaccgag ggcgacccggacagggttcggatggctgccgtcaacatggtcaagtctactgctgggagc ttggcacttgtgacctccaaggagccattgcgcgccaacttcaccaactatctccgccag ctcgcctcggagcttcctcagggtctcccagaaggtatcatcatgctgtgtgtcaactcc aacatggagctggcttccagcatcatcgaaaagtcggccgaggagcgcggtgtccccgag attgaggacttgctcgcagaagatctcgaggcgcgccgccatcaccgcatcaaccgaccc aacgacccattcatggatccccgcctgaaccgctgggcctggactatccccgctcctttc aagctgcagcccagcttgagcggcctcaatgatgagcaaatggccatctacgatgatttt gctcggcaatcaagggtgactgctgctgcggctgctgccgccgctgccgccgccgccgcc tctgttacgccttcgcacgttccttcatcgtcggatgcgagatcaattgcaaacgaagtc ctcggtgaccagtacaactctgtgtccaccattcctacccctgctgaaaccccatcgctt ccccacatgggcgtccaacctcagcattaccctcctgttcatgctggcatggtcaatggc cgacaacctggcatcagccctgtcgacgctcggaacgtggcggaacgggtgaacagcttg ttggaaaagctggcgactgccgtcagcaacacggccgaggagcactttgaggacctccct cggacccatgaagttatcaacattcatgacgccgtcgtccagcttacaatcaagactcaa cagacatctgatgaatttgcagtctatgtggcgacccaaatctccgggcttctcttccgc ccgcagcccgaacccacttccctcctcttggagactctggtccacgtgctggagacactg cgaaaggttgcgggcccggcgacgagtcaacagatccgctggctgttttaccagcagtca ggtagtacttttttgaatctgcccctgatcttggcgctgctcagaacggacctcattgat tggcacagcatcgatgcagccatggccaaggcgttgaatgaacggagcagcggttctatt gagtttctggagtccttgatggatcttacgctgttcagcgaggcccctgtcaatctctat accgatttcgttcagagcttggaggaagcctgggcgtggataactgaagagcccgaagtg ccaggtggccagcggttcaaggccaaggtgctggggccttcgcccgagattcatcctgac cgaacccccgaggctcagttcgagcagtttgactacatctttgaggaatgggtgcagcta tgcaacaacgactgcgcctcggaaaaggctgccacaaagtttgtgcaacagttgaactgg cggcggcacattgtcaccaaggaggactttttcgtctttgcgaggcaagcaattgacaaa tccgtcgaccgtgctgagcaaagtggccaccttggtgaaggcttcagcaacgagagcttc caggcagttgacgctctcgtcaagatgatcctcatcttcactcagtcccacgacgctcct ggcaccagcgaatcatcgcgtgtcgccttcctggactctgtccttgctcttggtgtgctt gtgttgaacaaccaccacgttagacgtggggacgctttcaacccacgcgtgttcttccgc ttcttctccaatctcttccaccagatcatgaacttgacggagagattctcagacagtgag agcgaaaagatagtgctcaactttgcggcacgtctatgggaccttcggccggttgtgtac cctggcttcttgtttcaatggatgggtctcttggctcaccgcgcctttctcccagcggtc atgcgcatgcccaaccaggcaggctgggagcccttcaccaagcttctcacccatctcttc tcttatctcggcaacatgctgaaagctttcgaagtgtcccttgccgctaaggacctgtac tcgggcacggtgaagcttgtggctgtgcttttccacgacttcccggagtatctttctgcc aaccatgtgcagctatgccagtgcctgccctcgcatgccacacagctcatcaacatgatc ttgtcggcctccacgacgccgttcgacaaggtgcccgatccctttcggccgggactcaag attgatcggatccccgagatgaaggacccggtggtgagcctttatgactgcgccggccag ctcaaggaactagggctctatgacatcctggagcagtcattgcaaaacggaccctcggag gacgccatcgcccaaattacgcacgcgatgcaccacgccgataccgacttgaccacgttt ggctttgtgcctgtcaatgtcgaccgccgagttgtcgacgccgtggtttcccacatcgcc aacgcggcctcccaacgcgctgttaacaacagtgacgcgcccgtgttcgtgtccggggct cccgacgtcaagactctgcacatgctggtcaccgaggtgccggccgagacacggtactat cttctcagcagcatggtcaacgaactccggttcgccaacgcgtcgacaaactatttcagc catgccattgtcgaaatttttggtcacgatcttgacgacccggaggagacagagattcgg cagcagattgtgcgagttctcttggagcgcatggttgggtactggccccagccatggggt ctcgtggtcacgatcctcgagttgctcaagaatgaaaagtttcatttctttgagctgccg tttatcaaggcggctcctgaggttgccgcccgcttcgaggctatcctccgccccgttgtg gcgtag

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