Ectopseudomonas oleovorans: BN5_3703
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Entry
BN5_3703 CDS
T03772
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ppse
Ectopseudomonas oleovorans
Pathway
ppse03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppse00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BN5_3703 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppse03021
]
BN5_3703 (rpoB)
03400 DNA repair and recombination proteins [BR:
ppse03400
]
BN5_3703 (rpoB)
Enzymes [BR:
ppse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BN5_3703 (rpoB)
Transcription machinery [BR:
ppse03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BN5_3703 (rpoB)
DNA repair and recombination proteins [BR:
ppse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BN5_3703 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
CDM42255
UniProt:
W6QZM4
LinkDB
All DBs
Position
complement(3822493..3826566)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQQGVSKEQFRDIGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDAVFVRIDRRRKLPASVLLRALGYSTEEVLDAFYDTNVFHVKGES
LSLELVPQRLRGEVAVLDIKDASGKVIVEQGRRITARHINQLDKAGIKELEVPLDYVIGR
TTAKAIVHPATGEIIAECNTELTADLLAKMAKAQVVRFETLYTNDIDCGPFISDTLKIDS
TTNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GSGVLSKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGKVTDEIVFLSAIEEADHVIAQASATLNDKGELVDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVNDNEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
QVSRGDIMADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEISSDIPNVGEAALNKLDEAGIVYVGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKQQLDE
IRKDLNEEFRIVEGATFERLRSALVGAIAEGGAGLKKGTAITDEFLDGLERGQWFKLRMA
DDALNEQLEKAQAYISDRRQMLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKIAELRKFLNEIYNEIGGRQENLDEFSDTEILELAKNLKGGVPMATA
VFDGAKETEIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggat
gtcatggatgtgccttacctcctggccatccagctggattcctatcgcgaattcctgcag
caaggggtgagcaaggaacaattccgcgacatcggcctgcatgcggccttcaaatcggta
ttcccgatcatcagctactccggcaacgctgccctggagtacgtcggctatcgcctgggc
gagccggcattcgacgtcaaggagtgcgtcctgcgtggcgtgaccttcgccgtgccgctg
cgtgtgaaagtgcgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtgtacatgggcgagattccgctcatgaccgagaacggtaccttc
gtcatcaacggtaccgagcgcgtcatcgtgtcccagctgcaccgttcgccaggcgtgttc
ttcgatcacgatcgtggcaagacccacagctcgggcaagctgctgtactccgctcgcatc
attccttaccgcggttcctggctggacttcgagttcgatccgaaggacgcggtattcgtg
cgtatcgaccgtcgccgcaaactgccggcttctgtcctgctgcgcgcgctgggttacagc
actgaggaagtgctggatgccttctatgacaccaacgtcttccatgtgaagggcgagagc
ctgagcctggagctggttccgcagcgtctgcgcggtgaagtcgcggtcctggacatcaag
gacgccagcggcaaagtgatcgtggagcagggccgtcgtatcactgcccgtcacatcaat
cagctggacaaggctggcatcaaggagctggaagttccgctcgattacgtcattggccgt
accactgccaaggccatcgtgcacccggctaccggcgagatcatcgccgaatgcaacacc
gagctgaccgccgacctgctggccaagatggccaaggctcaggttgtgcgtttcgagacg
ttgtacaccaacgacatcgactgcggtccgttcatctccgacaccctgaagatcgacagc
accaccaatcagctggaagcgctggtcgagatctaccgcatgatgcgtcccggcgagccg
ccaaccaaggatgccgccgagaccctgttcaacaacctgttcttcagcgccgagcgttac
gacctgtctgccgttggccgcatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtactgagcaaggaagacatcgttgccgtactgaagactctggtcgacatc
cgtaacggcaagggcatcgtcgatgacatcgaccacctcggtaaccgccgcgttcgttgc
gtcggcgaaatggccgagaatcagttccgtgttggcctggtgcgcgtagagcgtgcggtc
aaggaacgcctgtcgatggccgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccggttgcggcggcggtgaaggagttcttcggttccagccagctctcgcagttcatg
gatcagaacaacccgctgtccgagatcacccacaagcgccgagtttccgcactcggccca
ggtggtctgactcgtgagcgcgcaggcttcgaggtccgcgacgtacacccgactcactat
gggcgcgtgtgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactccctg
gcggcctacgcccgcaccaaccagtacggcttcctggagagcccgtaccgcgtggtcaag
gaaggcaaggtcaccgacgagatcgtgttcctgtccgccatcgaagaagccgatcacgtg
atcgcgcaggcttccgccacccttaacgacaagggcgagctggtcgatgagctggtagcc
gtacgtcacctcaacgaattcaccgtcaaggcaccggaagacgtgaccctgatggacgtc
tcgccgaagcaggtcgtttccgtcgctgcctcgttgattccgttcctcgagcacgacgac
gccaaccgtgcgctgatgggttcgaacatgcagcgtcaggctgtaccgaccctgcgcgcc
gacaagccgctggtaggtaccggcatggagcgcaacgtcgctcgtgactccggcgtctgc
gtcgtggcccgtcgtggcggcgtgatcgactcggtcgatgccagccgtatcgtggttcgc
gtcaatgacaacgaagtcgaaaccggcgaagctggtgtcgacatctacaacctgaccaag
tacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtgagcaagggggat
caggtttcgcgtggcgacatcatggccgacggcccgtccaccgacatgggtgaactggcg
ctgggtcagaacatgcgtgtcgcgttcatgccgtggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgcgtggttcaggaagaccgcttcaccaccatccacatccaggaa
ctgacctgcgtggcgcgtgacaccaagctcggcccagaggaaatctcctctgacatcccg
aacgtgggtgaagctgctctgaacaagctggacgaagccggtatcgtttacgtcggcgcc
gaagtcggcccgggcgacatcctggttggtaaggtcaccccgaaaggcgagacccagctg
actccggaagagaagctgctgcgtgcgatcttcggtgagaaggcgtccgacgttaaggac
acctctctgcgcgtgccgaccggcaccaagggtaccgttatcgacgtacaggtcttcacc
cgtgacggcgtcgagcgtgacagccgtgctctggcgatcgagaagcagcaactggacgag
atccgcaaggacctgaacgaagagttccgcatcgtcgagggtgcgaccttcgagcgtctg
cgttcggcgttggttggcgccatcgccgaaggcggcgctggtctgaagaaaggcactgcg
atcaccgatgagttcctcgacggtctcgagcgtggccagtggttcaaactgcgcatggct
gacgacgccctgaacgagcaattggagaaggcccaggcctacatctccgaccgccgtcag
atgctcgacgacaagttcgaagacaagaagcgcaagctgcagcagggcgacgacctcgct
ccgggcgtactgaagatcgtcaaggtctacctggctatccgccgtcgcatccagccgggt
gacaagatggccggtcgtcacggtaacaagggtgttgtctcggtgatcatgccggtcgaa
gacatgccgcacgatgccaacggtactccggtcgatatcgtcctgaacccgctgggcgta
ccgtcgcgtatgaacgtcggtcagattctcgagacccacctgggcctcgcggctaagggc
ctgggtgagaagatcaaccgcatgctcgaagagcagcgcaagatcgccgaactgcgcaag
ttcctcaacgagatctacaacgagatcggtggccgtcaggaaaacctcgacgagttctcc
gataccgagatcctcgagctggcgaagaacctcaaaggcggtgtgccgatggcgactgcc
gtgttcgacggcgccaaggaaaccgagatcaaggccatgctgaagctggccgatctgccg
gagagcggccagatgcgcctgttcgacggtcgtaccggtaaccagttcgagcgtccgacc
accgtcggttacatgtacatgcttaaactgaaccacctggtggacgacaagatgcacgcc
cgttccactggttcctacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgcttcggggagatggaggtctgggcactggaagcctatggcgccgcctac
accctgcaggaaatgctgaccgtgaagtcggacgatgtgaacggccgtaccaagatgtac
aagaacatcgtggatggcgatcaccgtatggagccgggcatgcccgagtccttcaacgta
ctgatcaaagagatccgttcgctcggcatcgatatcgatctggaaaccgaataa
DBGET
integrated database retrieval system
