Pseudomonas psychrophila: G5J76_02985
Help
Entry
G5J76_02985 CDS
T06988
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
ppsh
Pseudomonas psychrophila
Brite
KEGG Orthology (KO) [BR:
ppsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppsh03032
]
G5J76_02985 (gyrB)
03400 DNA repair and recombination proteins [BR:
ppsh03400
]
G5J76_02985 (gyrB)
Enzymes [BR:
ppsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
G5J76_02985 (gyrB)
DNA replication proteins [BR:
ppsh03032
]
Prokaryotic type
DNA Topoisomerases
G5J76_02985 (gyrB)
DNA repair and recombination proteins [BR:
ppsh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
G5J76_02985 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
HATPase_c
Toprim
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
QIE31263
LinkDB
All DBs
Position
704396..706813
Genome browser
AA seq
805 aa
AA seq
DB search
MSEENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDD
ITITIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV
GVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQAPMAIVGESETTGTQIHFKPSDQTFKN
IHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAFVDYLNTNKTPVNQV
FHFSVQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYIEA
EGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRFFSD
FLLENPNEAKLIVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSE
LYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIG
RDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKK
GKQEQYIKDDEAMEEYMTQSALEDASLHLNDEAPGISGEALERLVYDFRMVMKTLKRLSR
LYPQELTEHFIYLPAVTLEQLGDHTAMQEWMAKYEERLRLVEKSGLVYKASLREDRERNV
WLPEVELISHGHSTFITFNRDFFGSNDYKTVVTLGAQLSTLLDEGAYIQRGERKKAVTEF
KEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGADQIFNT
LMGDAVEPRREFIENNALAVSNLDF
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgaagaaaacacgtacgactcaacgagcattaaagtgctgaaaggccttgatgcc
gtacgcaaacgtcccggtatgtacattggtgatactgacgatggcagcggtctgcaccac
atggtgttcgaagtagtcgacaactctatcgacgaagcgctggctggccattgcgacgac
atcaccatcacgatccacccggacgaatccatcacggtgcgcgacaacggccgcggtatt
ccggtggatgtgcataaagaagaaggcgtctctgcagccgaggtcatcatgaccgtactg
cacgccggcggtaagttcgatgacaactcctacaaagtatccggcggattgcacggtgta
ggtgtttcggtggtaaacgccctgtccgaactgctggtcctgacggtacgtcgcagcggc
aagatctgggaacagacctacgtccacggtgttcctcaggcgccgatggccatcgttggc
gagagcgaaaccaccggcactcagatccatttcaaaccgtctgaccagacgttcaagaat
atccacttcagctgggacatcctggccaagcgtattcgtgagctgtccttcctgaactcc
ggtgtgggtatcgtcctcaaggacgagcgcagcggcaaggaagagttgttcaagtacgaa
ggtggtctgcgtgcattcgttgactacctgaacaccaacaagacgccggtcaaccaggtg
ttccacttcagtgttcagcgtgaagacgggattggcgtagaaatcgccttgcagtggaac
gacagcttcaacgagaacctgttgtgctttaccaacaacattccgcagcgtgatggcggt
acgcacttggtgggcttccgctctgccctgacgcgtaacctcaatacctacattgaagct
gaaggcctggccaaaaaacacaaagtcgccaccaccggtgatgacgctcgtgaaggtttg
accgcaatcatctcggtgaaagtgccggatccgaagttcagctcccagaccaaagacaag
ctggtttcttccgaagtgaagaccgctgttgaacaggaaatgggccggttcttctccgac
ttcctgctggaaaacccgaacgaagccaagctgattgtcggcaagatgatcgacgccgcc
cgtgcccgtgaggccgcgcgcaaagcccgtgagatgacccgtcgtaaaggcgcgctggac
atcgcaggcttgcccggcaaactggccgactgccaggaaaaagacccggcgctgtccgaa
ctgtatctcgtcgaaggtgactctgctggcggttccgccaagcagggtcgtaaccgtcgt
acccaggccatcctgccgttgaagggtaaaatcctcaacgttgagaaagcccgcttcgac
aagatgatctcttcgcaagaagtaggcaccttgatcaccgctctgggctgtggcattggc
cgcgatgagtacaacatcgacaaactgcgctatcacaacatcatcatcatgaccgatgct
gacgtcgacggttcgcacatccgtaccctgctgttgaccttcttcttccgtcagttgccg
gagttgatcgagcgtggctatatctatatcgctcagccgccgttgtacaaagtgaaaaaa
ggcaagcaagagcaatacatcaaagacgacgaggccatggaagagtacatgacccagtcg
gctcttgaagatgccagcctgcacttgaacgatgaagcccctggcatctcgggtgaggcg
ctggagcgcctggtgtacgacttccgcatggtaatgaagaccctcaagcgtttgtcgcgc
ctgtaccctcaggagttgaccgagcacttcatctacctgccggccgttacccttgagcag
ttgggcgaccacactgccatgcaagagtggatggccaagtatgaagagcgtttgcgcctg
gttgaaaaatcgggtctggtctacaaagccagcttgcgcgaagaccgtgagcgtaatgtc
tggttgccagaggtcgaattgatctcccacggccactcgacctttatcacgttcaaccgc
gacttcttcggcagcaacgactacaaaaccgtagtcaccctgggcgctcaattgagcact
ctgctggacgaaggcgcgtacatccagcgtggtgagcgcaaaaaagctgtcacggagttc
aaagaagcactggactggttgatggccgaaagcaccaagcgtcacaccatccagcgctac
aaaggtctgggtgaaatgaacccggatcagctctgggaaaccacgatggacccaagcgtg
cgccgcatgctgaaagtcaccatcgaagacgcgatcggcgccgatcagatcttcaacacc
ttgatgggcgacgccgtagaaccgcgccgtgagttcattgagaacaacgcactggcagtg
tccaatttggacttctga
DBGET
integrated database retrieval system
