Peribacillus psychrosaccharolyticus: I6J18_13840
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Entry
I6J18_13840 CDS
T07206
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ppsr
Peribacillus psychrosaccharolyticus
Pathway
ppsr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppsr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I6J18_13840 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppsr03021
]
I6J18_13840 (rpoB)
03400 DNA repair and recombination proteins [BR:
ppsr03400
]
I6J18_13840 (rpoB)
Enzymes [BR:
ppsr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I6J18_13840 (rpoB)
Transcription machinery [BR:
ppsr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I6J18_13840 (rpoB)
DNA repair and recombination proteins [BR:
ppsr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I6J18_13840 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QQS98780
UniProt:
A0A974RYU5
LinkDB
All DBs
Position
complement(2708765..2712346)
Genome browser
AA seq
1193 aa
AA seq
DB search
MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTASYQWFLDEGLREMFQDISPIEDFTG
NLSLDFIDYSLADPKYPVEETKERDVTYSAPLRVKVRLVNKETGEVKDQDVFMGDFPLMT
ETGTFVINGAERVIVSQLVRSPSVYYNGKMDKNGKRGFTATVIPNRGAWLEFETDAKDVV
YVRIDRTRKLPITVLLRALGFGTDQEIIDLIGDNEYIRNTLEKDNTESVDKALLEIYERL
RPGEPPTVENAKSLMVTRFFDPKRYDLANVGRYKINKKLHIKNRLLGQRIAETLIDPETG
EIIVESGTVLDRRILDRIIPFLEAGIGNKSYQPVGGVVEEDTILQPIKVYAPIDPDGEKV
INIIGNANVSTKVKNITPADIISSISYFFNLLHGVGITDDIDHLGNRRLRSVGELLQNQF
RIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAEL
THKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNPF
GFIETPFRRVDPETGKVTSRIDYLTADEEDNYVTAQANVKLSDDGSFLDDKVVARFRGEN
TVVPRDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPEAPRVGT
GMEYVSAKDSGAAVICKQPGIVEHVESREVWVRRVSEVDGKQVKGNLDKYRMQKFIRSNQ
GTCYNQRPIVSVGDEVVRGEILADGPSMEKGELALGRNVLVAFMTWDGYNYEDAIIMSER
LVKDDVYTSIHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAEVKDGD
LLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKVFNREDGDE
LPPGVNQLARVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPYMPDGTPVDIMLNPL
GVPSRMNIGQVLELHLGMAARSLGIHVASPVFDGAREEDVWETIEEAGMARDAKTVLYDG
RNGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGL
DVKIMNAEDREIEMRDLEDDDDVNQADSLNIELDTKDAAPQGAGLKTNAIITE
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggtcaacttgttcagtatggacggcaccgccaacgtagaagttatgcaagaatt
agtgaggttttggaattaccaaacctaattgaaattcaaacagcttcgtaccagtggttc
ttggatgaaggattacgtgaaatgttccaggatatttcacctatcgaagattttacaggt
aatttatcgttagattttattgattacagcctagctgatccaaagtatccagttgaagaa
acaaaagagcgtgatgtaacgtattctgcgcctcttcgtgtcaaagtaagactggtaaat
aaagaaacaggcgaagtcaaagaccaagatgtattcatgggtgacttcccactgatgacc
gaaaccggtacctttgtaattaatggtgcggaacgtgttatcgtttcacagctcgttcgt
tcacctagtgtgtactacaacgggaaaatggataagaacggtaaacgtggattcacagct
actgtcattccgaaccgcggtgcttggcttgagtttgaaactgatgccaaagatgttgtt
tatgtaagaattgaccgtactagaaaattaccgattactgtattgttacgtgcccttggg
ttcggaacagaccaagaaatcattgatttaatcggtgataacgaatacatcagaaatacg
cttgaaaaagataacactgagagtgtggataaagcacttctagaaatctatgagcgttta
cgtccaggagaaccaccaacagttgaaaatgcgaaaagccttatggttacacgcttcttc
gatcctaaacgttatgatttagcgaatgttggtcgttacaaaattaataaaaagcttcat
atcaaaaaccgtttgctaggccagcgtattgcagaaacgttaattgatcccgaaacaggt
gaaattatcgttgaatccggtacagtgcttgatcgacgtattttagatcggattattccg
tttcttgaagctggaattggaaataaatcttatcagccagtgggcggcgtagtagaggaa
gataccattcttcaacctattaaagtatatgctcctattgatcctgatggggaaaaagtt
attaatattatcggtaacgcgaatgtttcaactaaagtgaaaaacatcacgccagctgat
attatttcttcaattagttacttctttaacttgctgcatggtgtcggaataacagatgat
attgatcatttgggtaaccgtcgtcttcgttctgtaggtgaattgcttcaaaatcaattt
agaattggtttgtcacggatggaacgtgttgttcgtgaaagaatgtctattcaagataca
aacacaattacaccacagcaattaatcaatattcgacctgttattgcctctattaaagag
ttctttggcagctcgcagttgtctcagttcatggaccaaacaaacccgttagcagaattg
acgcataaacgtcgtctgtcagcgcttggacccggtggtttaacaagggaacgtgctgga
ttcgaagtacgtgacgttcactattcccactatggtcgtatgtgtccgattgaaacacct
gagggaccgaacattggtttaattaactcattatctagttatgcaaaagttaacccattt
gggtttattgaaacacctttccgtcgggttgacccggaaacagggaaggtaactagtaga
attgattatctaactgctgatgaagaagataactatgtaaccgcacaagcaaacgtaaaa
ttgtctgatgatggttcattccttgatgacaaagtcgttgcccgtttccgtggtgagaac
actgttgttccacgtgatcgcgtcgattacatggatgtttctcctaagcaggttgtatca
gctgcgacggcttgtattccattccttgagaatgatgactccaaccgtgctcttatggga
gcgaacatgcagcgtcaagcagtgcctttaatgcagcctgaagcaccgcgggtgggtaca
ggtatggagtatgtatcagcgaaagattctggtgcagctgttatctgtaaacagcctggt
atcgtagagcatgttgaatcccgtgaagtttgggtacgacgtgtcagcgaagtagacggt
aaacaagtaaaaggtaaccttgataaataccgtatgcagaaatttattcgttccaaccaa
ggaacttgttataaccaacgtccgattgtaagtgttggagatgaagttgttagaggagaa
atccttgcagatggaccttcgatggaaaaaggcgaattggcactaggccgaaatgtactt
gttgcattcatgacttgggatggctataactatgaagatgcgattattatgagtgaacgt
cttgtaaaagatgatgtttatacctcgatccatattgaagaatatgaatcagagtctcgt
gatacgaagcttggacctgaagaaattacgagagacataccaaacgtaggggaagacgct
ttgcgcaacctcgatgaacgcggtattatccgtattggtgctgaagtaaaagacggagat
ttacttgttggtaaggtaacgcctaaaggtgtaactgaacttacagctgaagaacgtcta
ttacacgctatctttggtgaaaaagctcgtgaagttcgtgatacatcccttcgcgtacca
catggcggcggcggaattgtacatgatgtcaaagtgtttaaccgagaagatggagatgaa
cttccaccaggtgttaaccagcttgcccgtgtttatatcgttcaaaaacgtaaaatacat
gaaggcgataaaatggctggacgacatggtaacaaaggtgtaatctctcgaatccttcct
gaagaagatatgccttatatgccagacggcacaccagtcgacatcatgttgaacccatta
ggtgttccatcacgtatgaacattggtcaggtattagagcttcatttaggtatggcagct
cgttcactgggtattcatgtagcgtcaccagtatttgatggtgctcgtgaggaagatgtt
tgggaaacaattgaagaagctggaatggctcgtgacgcgaagactgtcctttatgatggt
cgtaacggagaaccatttgataaccgtgtatcagttggaatcatgtatatgattaaacta
gctcacatggttgatgataaacttcatgctcgttcaactggaccatactcactagtaacg
caacagccactaggcggtaaagcacagtttggcggacagcgtttcggtgaaatggaagtt
tgggcacttgaagcttacggtgcagcttatactcttcaagaaattcttactgttaagtcc
gatgacgttgtgggccgtgtgaaaacatatgaagcaattgttaaaggtgaaaatgttcca
gaaccaggtgttcctgaatcattcaaagtattaattaaggaacttcaaagtttaggatta
gatgttaaaatcatgaacgctgaagatcgtgaaattgaaatgcgtgatttagaagatgat
gatgatgtaaaccaagcagattcattgaacatcgaattagacaccaaagacgcagctcct
caaggtgctgggcttaaaacaaacgcgattataactgaataa
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