Psychrobacillus psychrotolerans: ACN6MU_16515
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Entry
ACN6MU_16515 CDS
T11373
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ppst Psychrobacillus psychrotolerans
Pathway
ppst03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppst00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACN6MU_16515 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppst03021
]
ACN6MU_16515 (rpoB)
03400 DNA repair and recombination proteins [BR:
ppst03400
]
ACN6MU_16515 (rpoB)
Enzymes [BR:
ppst01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACN6MU_16515 (rpoB)
Transcription machinery [BR:
ppst03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACN6MU_16515 (rpoB)
DNA repair and recombination proteins [BR:
ppst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACN6MU_16515 (rpoB)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XQA37223
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Position
3215228..3218782
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AA seq
1184 aa
AA seq
DB search
MTGQLVQYGQHRQRRSFARISEVLELPNLIEIQTASYEWFLEEGLREMFKDISPIEDFTG
NLSLEFVDYSLNEPKYSVDESKERDATYAAPLRVKVRLHNKETDEVKEQDVFMGDFPLMT
ETGTFVINGAERVIVSQLVRSPSVYFHDKTDKNGKKGFGSTVIPNRGAWLEYEIDAKDVV
YVRIDRTRKLPVTVLLRALGFGTDQEIIDLIGDNEYLRNTLEKDNTETPEKALLEIYERL
RPGEPPTVESAKSLLYSRFFDPKRYDLANVGRYKMNKKLHIKNRLFNQTIAETLVDPETG
EILVEAGTLIDRRVLDRLIPHLENGIGFKTLSQVGGVLEDDITIQSIKIYAPNDEEQKEV
NVISNAYVETEVKNITPADIVSSIGYFFNLLFNVGNTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSINDTQSIVPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT
HKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNKFG
FIETPYRRVDPETGLVTSRIDYLTADEEDNYVVAQANSPLSEEGAFLKEEVVGRFRGDNT
VFRKEQIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLNPEAPFVGTG
MEHVNARDSGAAVIAKFDGIVEHVEAKEIRVRRIEEVDGKEVKGDLTSYKVHKFERSNHG
TSINQRPIVKIGDRVKPLDILADGPSMEQGELALGRNVLVAFMTWDGYNYEDAVIMSERL
VKDDVYTSVHIEEYESESRDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAEVRDGDI
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREDGDEL
SPGVNQLVRAYIVQKRKISVGDKMAGRHGNKGVISRILPEEDMPFLPDGTPVDIMLNPLG
VPSRMNIGQVLELHLGMASKLLGVHMASPVFDGANEEDVWNTMEEAGLNRDGKTILYDGR
SGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQSLGMD
VKMLTIDEEEIELRDLDEDDDIPAADALGILPIATEEEPVSTVE
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggtcaactagttcaatacggacaacaccgccagcgcagaagttttgcgcgtatt
agtgaggtgctagaacttccgaatctaattgaaattcagacggcatcttatgaatggttc
cttgaggaaggtttacgtgaaatgtttaaggatatttcaccaatcgaggactttacaggc
aatctatcacttgaatttgtcgactatagtttaaatgaaccgaagtattcggtcgacgaa
tccaaagaacgtgacgcaacatacgcagcaccacttcgcgtaaaagtacgtctccacaac
aaagaaacggacgaagtgaaagaacaagatgtctttatgggtgatttcccactaatgact
gaaactggaactttcgttattaacggagctgagcgcgtaatcgtatctcagttagtccgc
tcaccaagtgtatacttccatgataaaacagacaaaaatggtaaaaaaggttttggatca
acagtaatacctaaccgtggtgcttggttagaatacgaaattgatgcaaaagatgtagta
tacgttcgtattgatcgtacacgtaaattaccagttactgttttacttcgcgctttaggc
tttggaacagatcaagagattatcgatttaattggtgacaacgaatatttacgtaacacg
ctagaaaaagataatacagaaacgcctgaaaaagcgttattggaaatctatgagcgtcta
cgtcctggtgaaccaccaactgtggaaagtgcaaagagcttactatactctcgcttcttt
gacccaaaacgctatgatttagcgaacgttggtcgttacaaaatgaataaaaaattgcat
attaaaaatcgcttgtttaaccaaacaatagcggaaacgctagtggatccggaaacagga
gagattttagtagaagctggtacattaattgatcgtcgtgtactagatcgcctaattcct
catcttgaaaatggtattggctttaaaacattatctcaagtaggtggtgtcttagaggat
gatattacaatccaatcgattaaaatttatgcgccgaatgatgaagaacaaaaagaggtt
aacgtaataagtaacgcttatgtagaaacagaagtgaaaaatattacgccagctgacatt
gtttcatcaattggttacttctttaacctgttatttaacgttgggaacacggatgatatt
gatcatctaggtaaccgtcgtttacgttctgtaggcgagttactacaaaatcagttccgt
attggtctttcacgtatggaacgtgtagtacgtgagcgtatgtctattaacgacacacaa
tctatcgtcccacaacaactaatcaatatacgtccagttattgcatctattaaagaattc
tttggtagctcgcaattatctcagtttatggatcaaacaaacccactagctgagttgaca
cataaacgtcgtctatcggcgcttggacccggtggtttaacacgtgagcgtgcaggattt
gaagtacgtgacgtacattactctcactatggtcgtatgtgtccaattgaaacgcctgag
ggaccaaacattggacttataaactcactttccagttttgcgaaagtaaataaatttgga
tttatagaaacaccatatcgccgtgttgatcctgagaccggcttagttacatcacgaatc
gactatttaactgcggatgaagaggataactatgtggtagcacaagcaaactctccatta
tctgaagaaggagcattccttaaagaagaagtagtaggtcgtttccgtggagataacacc
gtatttagaaaagaacaaattgactacatggacgtttcgccgaaacaagttgtttctgct
gcgacagcatgtattccgttcttggaaaacgatgactccaaccgtgctcttatgggagcg
aacatgcagcgtcaagctgttccattattaaacccagaagctccatttgttggaactggt
atggaacatgtaaacgctcgtgactcaggtgctgcagttattgcaaaattcgatggtatt
gttgaacacgtagaggcaaaagaaattcgtgttagacgtatcgaagaagtggatggcaaa
gaagttaaaggagatttaacatcttataaagttcataaatttgagcgttcaaatcacggg
acatctataaaccaacgtccaattgtaaaaattggtgatcgtgttaaacctctggatatt
cttgcagatggtccttctatggaacaaggagagcttgctttaggacgtaatgttctagta
gctttcatgacatgggatggatacaactatgaagatgccgtaattatgagtgaacgtcta
gtgaaagatgatgtatatacttcagtgcatattgaagagtatgaatcagaatcacgtgat
acaaagcttgggccagaagaaattacgagagatattccaaatgtcggtgaagacgcattg
cgtaacttggacgaccgtggaattatccgtattggtgcagaagttcgtgacggagacatt
cttgttgggaaagtaacgcctaaaggtgttacagaactaacagctgaagaacgtttactg
cacgcaattttcggtgaaaaggctcgcgaagttcgagatacatccctacgtgttccacat
ggtgctggcgggattgtattagatgtaaaagtatttaatcgtgaagatggcgatgagtta
tctccaggtgttaaccaattagttcgtgcttatatcgttcaaaaacgtaaaatctccgtt
ggggataaaatggccggacgtcatggtaacaaaggtgttatctcgcgtattcttcctgaa
gaagatatgccattccttccagacggcacaccagtagatatcatgttaaatccacttggg
gtaccttctcgtatgaacatcgggcaagtactagaactccatttaggtatggcttctaaa
ttacttggcgttcatatggcatcaccagtatttgatggtgctaacgaagaagacgtttgg
aacacaatggaagaagctggacttaatcgtgacggtaaaactatcctgtatgacgggcgc
tcaggtgaaccatttgataaccgcgtatctgttggggttatgtatatgattaaacttgcc
cacatggtagatgataagttacatgcacgttctactggaccttattcacttgttacgcaa
caacctctaggaggaaaagcgcaatttggtggacaacgtttcggtgaaatggaagtatgg
gcactagaagcttatggtgccgcttatacgttacaagaaattttaacagttaaatccgat
gacgttgttggacgtgtgaaaacatatgaagcaatcgttaaaggggagagtgtaccagaa
ccaggagttcctgaatcattcaaagtattgataaaagagctacaaagtctaggtatggat
gttaaaatgcttacaattgacgaagaagaaattgagcttcgcgatttagatgaagatgat
gacattccagcagctgatgcacttggtatactaccgattgcaacagaagaggaaccagtt
agtacagtagaataa
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