Pseudomonas versuta: AOC04_22625
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Entry
AOC04_22625 CDS
T04081
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ppsy
Pseudomonas versuta
Pathway
ppsy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppsy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AOC04_22625 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppsy03021
]
AOC04_22625 (rpoB)
03400 DNA repair and recombination proteins [BR:
ppsy03400
]
AOC04_22625 (rpoB)
Enzymes [BR:
ppsy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AOC04_22625 (rpoB)
Transcription machinery [BR:
ppsy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AOC04_22625 (rpoB)
DNA repair and recombination proteins [BR:
ppsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AOC04_22625 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
ALE90821
UniProt:
A0A0M4RL33
LinkDB
All DBs
Position
5038954..5043027
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVQGES
ISLELVPHRLRGEIAAIDITDDKGKVIVEQGRRITARHINQLEKAGIKELVMPLDYVLGR
TTAKAIVHPATGEIIAECNTELTTEILAKIAKSQVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGYNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE
IRKDLNEEFRIVEGATFERLRSALVGRIAEGGAGLKKGQEITNEILDGLEHGQWFKLRMA
EDALNEQLEKAQAYIIDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPYDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINLMIEEQRKVADLRKFLHEIYNEIGGRQESLDDFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLRLADLPDSGQMTLTDGRTGNQFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtatctcttggcaatccagctggattcgtatcgtgaattcttgcag
gcgggagcgactaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcttgggc
gagccggcatttgatgttaaagaatgcgtgttgcgcggtgtaacttacgccgtacctttg
cgggtaaaagttcgtttgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttt
gtaatcaatggcaccgagcgtgtaattgtttcccagttgcaccgttccccgggcgtgttc
tttgaccacgaccgtggcaaaacgcatagctccggtaaactgctttattccgcgcgtatc
attccttaccgtggttcgtggttggactttgagttcgatccgaaagactgcgtgttcgta
cgtattgaccgtcgtcgcaagctgcctgcatcggtattgctgcgcgcgctgggttatacg
actgagcaggtgctggacgcgttctacaccaccaacgtattccacgttcagggcgaaagt
attagcctggaactggtacctcatcgcctgcgcggtgagatcgcggccatcgatattacc
gatgacaaaggcaaggtgattgttgagcagggtcgtcgtatcactgctcgtcatatcaac
cagctggaaaaagccggtatcaaagagctcgttatgcctctggactatgtcctgggtcgc
acaacggccaaggctatcgtgcatccggctaccggcgaaatcattgctgagtgcaacacc
gagctgaccaccgagattctggcgaaaatcgccaagagccaggttgtccgtatcgaaacg
ttgtacaccaacgatatcgactgcggtccgttcgtctccgacactctgaagatcgactcc
accagcaaccaattggaagcgctggtcgagatctatcgcatgatgcgtccaggcgagccg
ccaaccaaagacgctgccgagactctgttcaacaacctgttcttcagccctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgttgtgcaaagaagacatcgtcgcggtactgaagactctggtcgacatc
cgtaacggtaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgt
gttggcgaaatggctgaaaaccagttccgcgttggcctggtacgtgttgagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggctgcggcggtgaaggagttcttcggttccagccagctctcgcagttcatg
gaccagaacaaccctctgtccgagatcacccacaagcgccgtgtttctgcactgggcccg
ggcggtctgacgcgtgagcgtgcaggctttgaagttcgtgacgtacacccgactcactac
ggtcgtgtatgcccgattgaaacgccggaaggtccaaacatcggtctgatcaactccctg
gccgcctatgcgcgcaccaaccagtacggcttccttgagagcccgtatcgcgtggtgaaa
gacgctttggtcaccgacgagatcgtgttcctgtccgccatcgaagaagccgatcacgtg
atcgctcaggcctcggccacgatgaacgacaagaaagtcctgatcgacgaactggtagct
gttcgtcacttgaacgaattcaccgtcaaggcgccggaagacgtcaccctgatggacgtt
tcgccgaagcaggttgtgtcggttgcagcgtcgttgattccgttcctcgagcatgatgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaagctgtacctaccctgcgcgct
gacaagccgctggttggtaccggcatggagcgtaacgtagcccgtgactccggcgtttgc
gtcgtggctcgtcgtggtggcgtgatcgactccgttgatgcaagccgtatcgtggtacgt
gttgctgatgacgaagtagaaactggcgaagccggtgtcgacatctacaacctgaccaaa
tacacccgctccaaccagaacacctgcattaaccagcgtccgctggttcgcaagggtgat
cgcgtgcagcgcagcgacatcatggccgatggtccgtccaccgatatgggtgagctggct
ttgggtcagaacatgcgcatcgcgttcatggcctggaacggttacaacttcgaagactcc
atctgcttgtcggaacgggttgttcaagaagatcgctttaccacgatccacatccaggaa
ctgacctgtgtggcacgtgacaccaagcttgggcctgaagagatcactgcagacatccct
aacgtgggtgaagctgcactgaacaaactggacgaagccggtatcgtttacgttggtgct
gaagttggcgcgggcgacattctggtaggtaaggtcactccgaaaggcgagacccagctg
actccggaagagaagctgttgcgtgcaatcttcggtgaaaaagccagcgacgttaaagac
acctccctgcgcgtacctaccggtaccaaaggtactgtcatcgacgtgcaggtcttcacc
cgcgatggcgttgagcgtgatgctcgtgccctgtcgatcgagaagactcagctggacgag
atccgcaaggatctgaacgaagagttccgtatcgttgaaggcgccacttttgaacgtctg
cgctctgcactggttggccgtatagccgaaggtggagccggtctgaagaaaggtcaggaa
atcaccaatgaaatcctggacggtcttgagcatggtcagtggttcaaactgcgcatggct
gaagatgctctgaacgagcagcttgaaaaagcccaggcttacatcatcgatcgccgtcgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccgggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgtcgcatccagccgggt
gacaagatggctggtcgtcacggtaacaaaggtgtggtctccgtgatcatgccggttgaa
gacatgccgtacgatgccaatggcaccccggtcgatgtggtcctcaacccgttgggcgta
ccttcgcgtatgaacgttggtcagattctcgaaactcacctgggcctcgcagccaaaggt
ttgggcgagaagatcaacctcatgattgaagagcagcgcaaggttgctgacctgcgcaag
ttcctgcatgagatctacaacgagattggcggtcgtcaagaaagcctggatgacttctcc
gaccaggaaatcctggatctggcgaagaaccttcgtggcggtgtgccgatggctaccccg
gtgttcgacggtgccaaggaaagcgaaatcaaggcaatgttgcgcctggcagatctgccg
gacagcggccagatgacgctgactgacggccgtaccggcaaccagtttgaacgtccggtt
actgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgct
cgttctaccggttcttacagcttggttacccagcagccgctgggtggtaaggcacagttc
ggtggtcagcgtttcggggagatggaggtttgggcgctggaagcatacggcgcggcatac
actctgcaagaaatgctcacagtgaagtcggatgatgtgaacggtcgtaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtcctttaacgtg
ttgatcaaagaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
