Pungitius pungitius (ninespine stickleback): 119195838
Help
Entry
119195838 CDS
T07626
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X4
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119195838 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119195838 (cnot1)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119195838 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119195838 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
119195838
NCBI-ProteinID:
XP_037307021
LinkDB
All DBs
Position
6:5639513..5661100
Genome browser
AA seq
2385 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFIATLCYAVDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRSFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LQLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLADFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHAGFIIRDSKGLHIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFS
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSILGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDSLSGMGSL
NLGSTAPSHTQSMQGFPTSLTSAFSNPQSPAKAFPPLTNPNPSTPFGGISSLSSQLPGMD
SGPLGTGIGSSIGSSLGMPTVNTDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKE
IDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFP
QYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKN
RLKDYPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQVHSQ
SQQPGVPKAPQPGQPSTLVTTTTTTSTVTKTPTITRPTPSTFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHGLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILYTDLEVKSLLLEAYLKGQQELLYVVPFVAKVLESSLRSMVFRPQNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLKTLEEQLSAPK
KEVKPPEEMLPVSTAGDFVPFAAPPSTPATTTPACTTTGPPTPQFSYHDINVYALAGLAP
HININVNISLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKDFALDS
EESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAA
ARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAER
MPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWATDDVAQI
YDKCMADLEQHLHAIPQALAMNPLTQALRSLLEAVALARNSRDGIAALGLLQKAVEGLLD
ATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELL
IRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLFHTIETL
MRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREK
AEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISY
RAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVV
GVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKA
PGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQIL
YKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLK
VDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYN
IQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIA
NQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIK
NPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTSAS
NT seq
7158 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgattcgctttcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaactaccgagccagccagcaagaaatacagcatattgttaatcgtcacggc
cctgaggcagacaggcatttactacgctgtctcttctctcatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgattcaggagtgtgtgtcg
ctgatatcaaagccaaactttatcgctactctctgttacgccgttgacaatccgctgcac
taccagaagagtttgaagccttcggcccatttattcactcaactgagtaaagttcttaag
ctcagcaaggtccaagaggtgatttttggacttgctttgctcaactccagcaacgcagac
cttcgtagttttgctgcgcagttcatcaagcagaaacttccagacctcctgcggtcatac
gtggacgcggatctcggaggaaaccaggaaggtggcttccaagacattgccatagaggtc
ttgcaattgctcctctcccatctactctttggccagaagggagccagcggggtaggacaa
gagcagatcgacgccttcctcaagacactttgccgagatttcccccaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatcctg
ccagactcgggggagttagccaagaccatgatggagagttctctcgcagacttcatgcaa
gaagtcggctatggcttctgtgctagtctggatgagtgcagaaacataatcctccagtat
ggggtgagagaggtgactgccagccaggtggccagggtcctcggcatgatggctcgtaca
cactcggggctaacggatggcatcccactacagtcgatctccgctccaggcagcggtatc
tggagcgacgggaaggacaaaaatgatggctcacaggcacacacgtggaatgttgaggtt
ctcattgatgttgtgaaagaagtgaatcccaacctgaacttcaaagaagtgacctacgaa
ctggaccacgcaggctttattatccgggacagtaaaggcctacatatagtcgtgtacggc
attcagagggggctgggcatggaggtgtttcccgtcgatctcatatatcggccatggaaa
cacgcagagggacagctgtcatttattcagcactccctgatgagcccagaagtgttttcc
tttgccgactatccttgtcacactgtggccattgacatccttaaagccccaccagaggat
gacaacagggagattgctacctggaaaagtctggacctggtggaaagtctgctgaggctg
tcggaggtgggccagtatgagcaggtgaagcaactgttcagctttccgatcaagcactgc
ccggacatgttggtgctggccttgctgcagatctccacctcctggcacacgctgcgccac
gagctcatctctaccctaatgcccatctttctggggaaccaccccaactctgccatcatc
ctgcactacgcctggcacggacagggacagtctccttccatccgtcagcttatcatgcat
tcgatggctgagtggtacatgagaggagagcagtatgaccaggccaagctgtctcgcatc
ctcgacgtggcccaggatttgaagtctctatcgatgttgctgaatggaactccatttgcc
tttgttattgatctcgctgcacttgcctcccgccgtgaatacctcaaacttgataaatgg
cttactgacaaaatcagagagcatggggaacctttcatccaggcgtgtgtgacgttcctg
aagaggcgctgcccatccatcttgggtggtctggccccagacaaggaccagcccaaaagt
gcccagcttcccccggagacattagccaccatgctggcctgcctgcagtcctgtgctggg
agcgtgtcacaggagctgtcggagaccatcctgacaatggttgccaactgcagcaatgta
atgaataaagcccggcaaccaccaccgggggtaatgccaaagggtcgtgcccctagcacc
agcagcctagatgccatctctcctgtacagatggattccctctccggcatgggttccttg
aacctgggcagcacagccccctcccatactcaaagcatgcagggtttcccaacctcactg
acttctgctttcagtaatccccaatccccagcaaaggccttcccacctctcaccaacccc
aaccctagcacaccgtttgggggtatcagcagcctgtcctcgcagctccctggtatggac
tctggtcccttgggcacaggcatcggctcaagtattggctccagtctggggatgccaact
gtcaacacagacccttttggcaccaggaagatgagcacaccgggcctgaacccccccacc
tttcaacagacggacctttctcaggtgtggcccgaggcaaaccaacactttagcaaagag
attgacgacgaggcaaacagttacttccagcgcatctacaaccacccacctcacccaact
atgtctgttgatgaagtactggagatgctgcagaggttcaaggattcgaccatcaagcgg
gagcgcgaggtgttcaattgtatgctccgtaacttgtttgaggaataccggttcttccct
cagtacccagacaaggagctgcacatcactgcctgcctttttggtggcattatcgagaag
ggtctcgtgacctacatggctctgggcctggccctccgatacgttcttgaagccttaagg
aaaccctatggatccaaaatgtattactttggaattgctgccctagataggtttaaaaac
agactaaaggactatccccagtattgtcaacacctggcttcgattgcccacttcttgcaa
ttcccccaccatttacaagagtatatcgagtatggccaacagtcacgggaccctccggtg
aagatgcagggctccatcaccacgcctggcagtctggcactggcacaagtccattcccag
tcacagcaaccaggtgtccccaaagctccgcagccaggtcagccaagtactctagtcacc
accacaacgacaacgagcaccgtgacaaagacgccgaccattacaagaccgacacccagc
actttcaagaaggatgtgcctccctccataaacacaactaacattgacaccctgctagtg
gccactgaccaaacagaaaggattgttgagcctccagaaaatgtccaggagaagattgcg
ttcatcttcaacaatctttcccagtccaacatgacacagaaggttgaagagttgaaagag
actgtgaaggaagagtttatgccctgggtctctcagtacctggtgatgaagcgtgtgagc
attgagcccaacttccacggtctctactccaacttcctggacaccctcaagaaccccgag
tttgtgaaaatggtcctcaatgagacttacaggaacatcaaggttctgttgacctctgac
aaggcagctgccaatttctctgatcgctctctgctgaagaacttgggccactggctgggc
atgatcacactggccaagaacaagcctatcctctacacggatctggaagtcaagtctttg
cttctggaagcctacttgaaaggccaacaggagctactgtatgttgttccctttgtggcc
aaagttttggagtccagtctacgtagcatggtcttccggccccagaacccctggaccatg
gccatcatgaatgttcttgctgagctgcatcaagaacatgacctcaagctcaacctcaag
tttgagattgaagttttgtgtaagaacttatcgctggacatcaatgacctcaagccaggc
accttgctgaaggacaaagacaagctcaagaccttggaggagcagctgtctgcaccaaag
aaagaagtgaagcctccggaggagatgctgccggtctctactgcaggagactttgttcca
tttgcggcccctccctcgacccccgccaccaccacccccgcttgcacaacaaccgggccc
ccaaccccacaattcagttaccacgacatcaatgtgtatgccttggcaggcctggcccca
cacatcaatatcaatgtcaacatctcactgctgcaggcccatcctcagttgaagcagtgt
gttcggcagtcggtggagcgagcggttcaggagcttgtgcaccctgtggttgaccgctcc
atcaaaatcgccatgactacctgtgagcagatcatcaggaaggactttgccctggattcg
gaggagtcccgcatgcgcgtggcggctcaccatatgatgagaaacctgaccgccggcatg
gccatgatcacctgccgcgagcccctgctcatgagcatcgccaccaaccttaagaacagc
tttgccgctgccctgagggcaccgacaccccaacagagggagatgatggaggaggctgcg
gccaggattgctcaagacaactgcgaactcgcttgctgcttcattcagaaaacggcggtc
gagaaagctggccctgaaatggacaagaggctagccacggagtttgagctgaggaagcac
gcccgccaagaagggcgtcgctattgtgatcccgtcgtcctgacttaccaggctgagcgt
atgcctgagcagatcagactcaaggtgggaggagtggaccccaaacaacttgccgtgtat
gaagagtttgccaggaatgttccaggtttcttacccagcaatgatctctcccagcccact
ggcttcttggctcagcccatgaagcagcaggcatgggccacagatgacgtggctcagatc
tatgataagtgcatggccgacctggagcaacatcttcatgccatccctcaagcactcgcc
atgaaccccttgacccaggctctgcgcagcctgctggaggccgtggccttggcgaggaac
tcccgggacggcatcgccgcgctcggccttctgcagaaggctgtggaaggtcttctagat
gccaccagcggtgcagatgctgacctgctgctccgctacagggagtgtcacctgctggtg
ctgaaagcccttcaggatggacgggcctatggcccacagtggtgcaataagcagataact
aggtgtctgattgaatgtcgtgatgagtacaaatacaatgtagaggcagtggagcttctg
atcaggaaccacctggtcaacatgcagcagtacgacctgcacctggcacagtcaatggag
aatggacttcactacatggcggtagctttcgccatgcagctggtgaagctgctgctggtg
gacgaacgcagcgtcagccacgtcacggaggctgacctcttccacacaattgagacttta
atgagaacctgtgcacactccagagccaacgcacctgagggccttccccagctgatggat
gtcgttcgctccaactacgaggccatgatcgaccgagcccacggaggacccaacttcatg
atgcactctggcatttcacaggcgtcagaatatgacgaccccccaggcctcagagagaag
gcagagtatctcttgagggaatgggtcaacctgtaccactcggccgccgccggcagggac
agcaccaaagctttctccgccttcgttggccagatgcaccagcagggcatcctgaagaca
gatgacctgataacgaggttcttccggctgtgcacagagatgtgcgtggagataagctac
cgggcgcaggctgagcagcagcacaacccggcagccagcgccgccatcatccgagcaaag
tgctaccacaacctggacgccttcgtcaggctcatagcccttctggtcaaacactctgga
gaggccaccaacacagtgacgaaaatcaacctcctcaacaaggtgctgggtatcgtagtg
ggggtgctgattcaggaccacgacgtccgtcagaccgaattccaacagctgccgtaccac
cgcattttcatcatgctgctgttggagctaaacgcccctgaacacgttctggagaccatc
aactttcagacgctcaccgccttctgcaataccttccacatcctgagacccaccaaagcg
cccggctttgtgtacgcctggctggagctcatctcccatcgcatcttcatcgccaggatg
ctagcgcacactccgcagcagaagggctggcccatgtacgcacagctgctgattgatctc
tttaagtacctggcccctttcctgaggaatgtagagctcaacaaacctatgcaaatcctc
tacaagggcactctgagagtgctcctggtcctgctgcacgacttcccagagttcctgtgt
gactaccattacggcttctgtgacgttatcccgcccaactgcatccagctccgcaacctc
atcctcagtgccttcccacgcaatatgaggctcccagaccctttcacacccaacctcaag
gtggacatgctgagcgagatcaacatcgcgccccgcatcctcaccaacttcacaggcgtg
atgccttcccagtttaagaaggacctggactcctatctgaagacccgctcaccagtcacc
ttcctatcagagctgcgcagcaacctgcaggtgtccaacgagcccggaaatcgctacaac
atccagctgatcaatgctttagtgttgtatgtaggcacacaggccatcgcccacatccac
aacaagggcagcaccccctcaatgagcacgatcacccactctgcacacatggacatcttc
cagaaccttgctgtggacctggacactgaggggcgttacctgttcctgaatgcaatcgcc
aaccagctgcggtaccccaacagccacacccactacttcagctgcacaatgctctatctg
ttcgccgaggccaacacagaggccatccaggagcagatcaccagggttctgttggagagg
ctgatagtgaacaggccccacccgtggggtctcctcatcaccttcattgagctgattaag
aaccccgccttcaagttctggagccacgactttgtgcactgtgctcctgagattgagaag
ctgttccagtcagtggcccagtgctgcatgggacagaagcaggcccagcaggtgatggag
ggaaccagtgccagctag
DBGET
integrated database retrieval system
