Pungitius pungitius (ninespine stickleback): 119197904
Help
Entry
119197904 CDS
T07626
Name
(RefSeq) collagen alpha-6(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04510
Focal adhesion
ppug04512
ECM-receptor interaction
ppug04518
Integrin signaling
ppug04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119197904
04518 Integrin signaling
119197904
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119197904
09142 Cell motility
04820 Cytoskeleton in muscle cells
119197904
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ppug04147
]
119197904
00536 Glycosaminoglycan binding proteins [BR:
ppug00536
]
119197904
Exosome [BR:
ppug04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
119197904
Glycosaminoglycan binding proteins [BR:
ppug00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119197904
Hyaluronan
Extracellular matrix or blood plasma proteins
119197904
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
Kunitz_BPTI
VWA_CoxE
Sec23_trunk
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
119197904
NCBI-ProteinID:
XP_037310495
LinkDB
All DBs
Position
11:complement(18972041..18997280)
Genome browser
AA seq
2486 aa
AA seq
DB search
MEGRTSLLFCLIAVACSSGSAALTTECESATVADIVFLVDGSGSIGENNFKEVQSFIDSA
IEALDIGTNKVRVGLAQFSDEPIAEFLLKDHKNKKSLQAAIKAVKYRTGGTNTGEAINFL
RDNFFTEEAGSRVNQQVPQIAVVITDGGSQDDVKLPAQSLRRRGVIMFAIGVGAANHTEL
VSIANRPSERFLYSIDNYQALRSKRDDLLQTVCISVDDQREALTDRFGDIFFLLDSSIAT
GQFNIFKRDFIKLIESLNVGESAYRIGLAQYGQNPKVEFGLLTHQTKQQTLAAIKRFRLP
PSYRGQRNLGTALKNARNLFFTRGDGGRAHQGVPQTLVVVMGGESSDSVSDAAQRVESSE
ITVYGVSAGASRTALESVVSSEYILSSPQLKESLTAVKKDRISEDCNVANVADIVFIVDD
SGSIETSDFQLVRDFLRSVVSGFKVGPISVQVGIVTYSDESTAQVYLNDFDDKAEVLQFI
KMLPHRGGGTKTGAALNFTLKEMFVEQKGSRIKQNVQQVAVVITDGESQDEVGEAAASLR
RAGVTVYAVGVGDYDKTELVKMATQTSNVFEVESFEELKLTIRKLQKNLCNNLVIIDPSE
EDNKKACVRKDVADIFFLIDNSGSINDLDFEDIKTFILRFLKTFRIDPDHFRMGVAKYAD
STTTEFTLTTHRDFESVKKALMAFRRTGGGRNTVRNTGAALFQMAKEFSKNPRDLTVPKY
LIVITDGESADEVTAPATNLRARGIFTYAIGVKDSTPAELQKIAGDPERTFYVNNFDALK
SIDNKVITDICTDEACRNIQGDVFFLIDSSYGIKEEDFQTMKEFLKSLIRKTAQHNELQV
GLMQFGSESRLEFALKPSGRMEEMILGIDEMEQVDGDTYLGKALESALQYFNEDEGGKPH
TGQKLIVITDSKSADQVKGPAKALRDKGVVVHAIGVAEADTDQLAEISNSLDRVYNVRDF
DALKDLEGRFVSKVCENVCLLVQADIIFLVDTSKSISKTQFKDMQTFMKTVVNQTKVGQE
NTRFGLLSYSTTPTRHFDLKDHDCKLDVLKGIDIKNPERDDTYTSRALNFSLEFFDAKYG
GRRERGVPQILMVITDGEATDPYDLKKNSDALRKRGVNVVSIGVKNALKTELEIMADDPS
KVFFVDNFEELSTLYRQMSNIFCRKKVCKENDIVFLIDRSGSINIDQHQKIKNFTVQLVN
QFTVSKGGVHIGVGQFAKHFQKEFYLNEYIDKENCTAKINELNHKGGETNILEALSEIQK
FFLSENGGRNGVPKTLVLISDGRYDNVKVSEEGEHLKSLGINVFAIAVGKYYPLKLYQIT
RVQNRVLTSKSFDELPKMVEMVGDKLCPEERDDEPKPDPDCSVDIAMGFDISREDRPPGA
KLVSGHPKLEAYLPEIVRSVSSLPSQCCGDSGPVRTNIAFRVVDREGRSTYDTDFKAYYN
ETVHDVMNEPMSRPSFFNAALLDSFKTMFKTKSKARVKVLVIFSDGIDQDVMTLEQESEL
LRQSGVSALLTVALEGARDPAQLQMVEFGRGFGYKLPLSIGMTSVSSAVLKQMDTVTSRE
CCNVTCKCSGNEGGRGSQGPPGPKGLPGSPGQPGFPGDEGVPGERGRPGPSGPPGFDGCP
GPRGHKGSRGPSGNKGEDGEDGLGGVDGEQGMTGPAGRRGPRGDSGDPGIPGISGEKGLK
GQRGLRGDPGEPGADNNRPGAKGDPGNPGLPGRAGQDGEKGDRGDNGNTGPDGRRGSGGK
KGRPGEKGEPGLQGPPGASGPQGKGGEPGGRGPKGFPGFPGVQGPPGPAGDPGSAGRRGA
NGAKGQPGDPGVKGGPGGQGSRGPPGLDGKDGLGPPGQKGAKGEFGFPGYPGLPGGDGQR
GNKGYPGPKGNQGRGGNSGGSGTPGDPGDDGHPGYIGPKGLPGGKGMTECQLISYIRDNC
ACYDGQSQCPAYPTELVLALDMSEDVDSDAFERQRSVLLFLLDKITVSESNCPTGARVAV
VAYSDYTKYLIRFHDYRRKAQLIELVKNIALERTSKRRQLGTAMLFVGQNVFKRVRAGIM
MRKVAVFLANGPSQDVEDIVTAVMEYRALGIVPAVVSLRNAPAVSEAMQVDDSGHSIFTV
LRRDMAADLKSVQNCAVCYDPCQRQDQCPFIQEPVRPQEVDMDLVLVADGSREVQADEYR
GVQQLLGSVVEQLAVSPQPRRAGNLARVAAVQQSGTLDIKVAFGFGAYQTSAVMRNHLIR
NMTQRGGSSALGRTLEFTLQEVLLKAGQPRQRRVLLTVVGTKTSVEDRAKLRYISRRAKC
EGVAVFVVTVGGRYDRAQVEELASPPLHQHLIHMGSLKAEEQGYAQRFFRVFLSALNKKI
NAYPPPALKRTCNQLTDDLYLRDGQETEQRDEEMGVKTQSGQVDVTETVGDGQSFSGAEP
NDICFLSKDPGTCSNYTMMWFFDSEQRRCSRFWYSGCGGNKNRFEMLKDCESLCLTKRGG
VRARREGVTGGSIAGSLHRLKKAALH
NT seq
7461 nt
NT seq
+upstream
nt +downstream
nt
atggagggtagaacgagtcttctcttctgcctcattgcggtggcgtgttcctccggatcg
gctgctctgacgacagagtgtgaaagcgccacagtggccgacatcgtcttcctggttgac
ggctccggcagcatcggggagaacaactttaaggaggtccagtcttttatcgacagcgct
atcgaggccctcgacatcggcaccaacaaggtccgcgttggcttggctcagttcagtgat
gaacccatcgcagagtttctgcttaaggaccacaagaacaagaagtccctgcaggccgcg
ataaaggcagtcaagtacagaacaggaggcacgaacaccggcgaagctatcaatttcctc
cgagataattttttcacagaagaagccgggagccgagtcaaccaacaggttcctcagatc
gccgtggtcatcacagacggaggctctcaggacgacgtgaagctgcccgcccagagcctg
aggcggcgcggggtcataatgtttgccatcggagtgggagcagccaaccacacagagctg
gtttccatcgccaaccgtccctcagagcgtttcctgtactccattgacaactaccaggcc
ctgaggagtaagagagacgatctgctgcaaactgtttgcatctctgtggatgatcagagg
gaagctctgactgacaggtttggagatattttcttcttgttggacagcagcatagctacc
ggacagttcaacatattcaagagggacttcatcaaattgattgaaagtcttaacgttgga
gagtcggcctaccgcatcggcttggcccagtacgggcaaaaccccaaggtagaatttggt
ctcctcacccatcaaaccaaacagcaaaccctggcggccatcaaacgtttcaggctgccc
ccatcatacagaggacaacgaaacctgggtactgctctaaagaacgccaggaacctcttc
tttacccgtggggatggggggcgagcacaccaaggcgtcccgcagaccctggtggttgtg
atgggaggcgagtccagtgactctgtgtccgatgccgcccaacgggtggaatcctcagag
atcactgtttatggggtgtctgcgggtgcgagcagaactgccttagagtcagttgtcagt
tctgagtacattcttagttcgccgcaattgaaggagtccttgacggcagttaaaaaggac
cgcatttctgaagattgcaacgtagccaacgtggccgacatcgtgttcatcgttgatgat
tccgggagcattgaaacctccgacttccagctggtgcgcgatttcctccgctcagtcgtg
agtggcttcaaagtgggtcccatttcagtccaagtgggcatcgtcacgtacagcgatgag
tccactgcgcaagtctacctcaacgactttgatgacaaggctgaagtcctccagtttatc
aagatgctgcctcaccgtggaggcggtacgaagaccggagccgccctaaacttcacactg
aaggaaatgttcgttgagcaaaagggcagcaggataaaacagaatgtccagcaagtggca
gtggtgatcacagatggagagtcccaggacgaagtgggtgaagcagcagccagtctgcga
cgggccggggtcacggtttacgcagtaggggtcggagattatgacaagactgaactggtg
aagatggccactcaaacctctaatgtctttgaggtggaaagctttgaagagctgaagctc
acaataagaaagctgcagaaaaacctgtgtaacaatctggttatcatagatccaagcgaa
gaggacaacaaaaaagcatgtgtgagaaaagacgtagcggacatcttcttcctgattgac
aactctgggagcattaatgacctagacttcgaagacataaagacgttcattcttaggttt
ctgaagactttccgtattgacccagatcattttcgcatgggagtggcaaaatatgctgat
tctactactacagaatttactctgacgacccacagagactttgagtcagttaagaaagcc
cttatggcttttagacgcacaggaggtggaaggaacacagtgaggaacacaggagcagct
ctgtttcagatggccaaagagtttagcaaaaacccccgtgacctcacggtcccaaaatac
ctgatcgtcatcacagatggggaatccgctgatgaggtcacggctcccgcaacaaattta
agggcgcggggtatcttcacttacgccatcggggtgaaagattcaaccccagcggagcta
caaaagattgccggcgaccccgagaggaccttctatgtcaataattttgatgccttgaaa
tcgatcgacaataaagtcatcaccgacatttgcactgatgaagcttgcagaaatatacag
ggcgatgtctttttcctaattgacagctcttatggcatcaaagaggaagactttcagaca
atgaaagagttcctgaaatccctcatccgcaagaccgcccagcataacgagttgcaggtg
ggtctcatgcagttcggctccgaaagccgtcttgagttcgccttaaagccttctggaagg
atggaggaaatgatcttaggcattgatgaaatggagcaggtggatggagacacgtacttg
ggaaaggcccttgaaagtgcattgcagtatttcaatgaagatgaaggagggaaacctcac
acgggtcagaagctgatagtgataaccgacagcaagtcggccgaccaggtcaaaggcccc
gccaaggctctgagggacaagggagtggtggtccacgccatcggtgtggcggaagccgac
actgaccagctggcagagatcagcaattcgttggacagagtttataacgtgagagacttt
gatgctctgaaggacttggaaggcaggttcgtgtcgaaggtgtgcgagaacgtgtgtctt
ttagttcaagctgacattatcttcctggtggacacctccaagtccatatctaaaacacaa
tttaaagacatgcagacctttatgaagaccgttgtgaaccaaaccaaagttggccaggaa
aacactcgttttgggctcctatcctactcgactactccaacgcgtcattttgacctcaag
gaccatgactgcaaactagatgttttgaaaggcatcgacattaaaaatccagaacgagat
gacacttatacgagtagggctttaaacttctcgctggaattcttcgatgctaaatatggt
ggccgcagagaacgcggggtgcctcagattctgatggtgatcacagacggggaggccacc
gacccgtacgacttgaaaaagaattctgatgcgctgagaaagcgcggtgtcaacgttgtg
agtatcggggtgaaaaatgctttaaagactgagctggagataatggccgacgacccatcc
aaagtgttcttcgtggacaactttgaggaattatccactttgtacagacagatgtctaac
atcttctgcaggaaaaaagtgtgcaaagagaacgacattgtcttcctaatcgaccggtcg
ggcagtatcaacatagaccaacatcagaagatcaaaaacttcacagtacaattggtgaac
cagtttaccgtcagtaaaggcggcgtgcatattggagttggacagtttgcaaaacatttt
caaaaagaattctacctcaatgaatatattgacaaggagaattgtaccgcaaagatcaac
gaactgaatcataaaggtggagaaaccaacatcctagaggctttgagtgaaatacagaaa
ttctttctttcggaaaacggaggccgcaatggggtccccaagaccctggtgttgatatca
gatggtcgatatgacaacgtgaaagtgtcagaagaaggtgaacatctaaagagtcttggc
ataaatgtgtttgccattgccgtcggaaagtactaccccttgaagctttatcagattacc
cgcgtccaaaacagggtgttaacctcaaaaagcttcgacgagctaccaaagatggtggaa
atggtgggggataaattgtgccccgaagaacgagacgacgagcccaaaccagatccagac
tgtagcgttgatatcgccatgggattcgatatttcccgggaagaccgacctcctggcgcg
aagctggtcagcggccaccccaagctcgaggcctacctgccagagatcgtccgctccgtg
tcgtcgctaccgagtcagtgctgcggcgattcaggtcctgtcagaaccaacatcgccttt
agagtggtagatcgagagggaaggtctacgtacgacacagactttaaggcctactacaat
gaaacggtgcatgatgtcatgaatgagccgatgtcacgaccttccttcttcaatgctgcc
ctgctggactccttcaagacgatgttcaagaccaagtccaaagctagggtgaaggtgctg
gtgatcttctcagatggaatcgatcaggacgtgatgactctagagcaggaatcagagctt
ctgcgacagtctggggtcagtgctctgctgacggtggccctggagggggcccgggacccc
gcccagctgcagatggtggagttcgggcgaggtttcggctacaagcttcctctcagcatc
ggcatgacgagcgtcagcagcgcggtcctcaagcagatggacacagtgacatccagggag
tgctgcaacgtcacatgcaaatgttcaggaaatgaaggcggccgtggctctcaggggccc
ccggggccaaagggtcttcccggatcgccaggtcaaccaggttttcctggagatgaagga
gtccctggtgagcgagggcgtcctggaccgagcggacctccgggcttcgacggctgtccc
ggtcccagaggacacaagggctccagaggaccgtccggtaacaagggcgaggacggagaa
gacggactgggcggagtcgacggagagcagggaatgacaggcccagccgggaggcgagga
ccaaggggagattctggagacccgggtatcccgggtattagcggggagaaggggcttaaa
ggacagcgaggactcagaggagatccgggagaaccaggcgccgataacaacagaccggga
gccaaaggggaccctgggaacccaggtctaccgggtagagctggacaggacggggagaaa
ggcgatcgcggagacaatgggaacacgggtccagacgggaggagaggctcgggtgggaag
aaggggagacctggagaaaaaggggaaccgggccttcaggggccccccggtgcttctggt
ccacagggaaaaggtggagaacccggtggacgtggaccaaaaggattccctggcttccct
ggagttcagggtccaccaggaccagctggagatccgggatcagccgggcgccgcggagcg
aacggagcgaagggccaacccggagacccgggtgtgaaggggggtcctggagggcaggga
tccagagggccgccgggtttagacggaaaagacggtctgggacctccaggacaaaaagga
gccaagggagagtttggtttccctggttaccccggactaccgggtggagacggtcagagg
ggaaacaaaggatacccaggacccaaagggaaccaaggtcgaggggggaactcaggcgga
tcgggaacccctggtgatccgggagacgatggacatccgggatacataggtcccaaaggt
cttcctggaggcaaaggcatgactgagtgtcagctgatcagctacataagagacaactgt
gcttgttacgacggtcagtcacagtgcccggcctaccccaccgagctagtcctggctctg
gacatgtcggaggacgtggactcggacgcctttgagaggcagcgctctgtcctcctcttc
ctactggacaagatcactgtctcggagagcaactgtccgacgggcgctcgcgtggccgtg
gtggcctacagcgactacaccaagtacctgatccgcttccacgattaccgccgcaaggcc
cagcttatcgagttggtgaagaacatcgccttggagaggacttccaagcggcgccagctc
ggtaccgccatgctcttcgtgggtcagaacgtcttcaagcgtgtcagagcgggaataatg
atgaggaaggtggccgtcttcctcgctaacgggccgtcgcaggatgtcgaagacattgtc
accgctgtaatggagtaccgggccctcggcatcgtgccggcagtcgtctccctgaggaac
gctcccgctgttagtgaagccatgcaggtggacgattcaggacactccatcttcactgtt
ctgaggagagacatggctgccgacctgaagagcgtccagaattgtgccgtgtgctatgac
ccctgtcagcgtcaggaccagtgccccttcatccaggaaccagtgcggcctcaggaggtt
gacatggacctggtcctggtggcggacggctccagggaggtgcaggctgacgagtaccgc
ggcgtccagcagctgctgggctctgtggtggaacagctggctgtaagtcctcagccccgc
agggcgggcaacttagcccgggtggccgcggtccaacagagcggcaccctggacatcaag
gtagcgtttggcttcggggcctaccagaccagcgcagtgatgaggaaccacctgatccga
aacatgacgcagcggggcggttcgtcggcgcttggacggacgctggagttcaccttgcag
gaggttcttctgaaggccggacagccccggcagaggagggtgctgctgactgtggtggga
accaagacctcggtagaagaccgagctaagctgcgctacatttcccggagggccaagtgt
gagggggtggcggtgttcgtggttacggtcgggggtcgctatgaccgggcgcaggtggag
gagctggccagtccgcctcttcatcagcacctgatccacatgggcagtctgaaggctgag
gagcagggctacgcccagcgcttcttcagagtcttcctctccgccctcaacaagaaaatt
aacgcgtaccctccgcctgcattgaaacggacctgcaaccagttgacagatgacttgtat
cttcgggacggacaggagacagagcagagggacgaggagatgggtgtaaagactcagtct
ggacaggtggacgtcacagaaactgtaggagatggacaaagcttctcaggggctgaaccc
aacgacatctgtttcctcagcaaagaccccggcacctgctccaactacaccatgatgtgg
ttctttgacagcgagcagaggagatgctctcgcttctggtacagcggctgtggaggcaac
aagaaccgctttgagatgctgaaggactgtgagagcctgtgtcttaccaagagaggtgga
gtaagagcaagaagagaaggagtaacaggaggaagtattgcaggaagcctccatcgtttg
aagaaagctgctttgcactaa
DBGET
integrated database retrieval system
