Pungitius pungitius (ninespine stickleback): 119210553
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Entry
119210553 CDS
T07626
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
119210553 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppug03000
]
119210553 (kdm2ab)
04121 Ubiquitin system [BR:
ppug04121
]
119210553 (kdm2ab)
03036 Chromosome and associated proteins [BR:
ppug03036
]
119210553 (kdm2ab)
Enzymes [BR:
ppug01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
119210553 (kdm2ab)
Transcription factors [BR:
ppug03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
119210553 (kdm2ab)
Ubiquitin system [BR:
ppug04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
119210553 (kdm2ab)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
119210553 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
119210553 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
JmjC
F-box
LRR_6
DUF7885
Cupin_8
C1_1
LRR_4
Cupin_1
New_glue
Motif
Other DBs
NCBI-GeneID:
119210553
NCBI-ProteinID:
XP_037316590
LinkDB
All DBs
Position
2:complement(22187767..22199628)
Genome browser
AA seq
1317 aa
AA seq
DB search
MEDPHTRYSKRLRTGTRRRYQDDGISDDEIEGKRMFDLDEKLVCARFKSDLVKHMDGKDF
TFEYIQREGLRDPIIFDTADGLGIQMPDPDFSVSDVKLFVGSRRIVDVMDVNTQKGIEMS
MAQWRRYYDTPPSEREKLYNVISLEFSHTRLENLVKRPASVDLIDWVDNMWPRHLKERQR
DSTNSIIEMHYPKVQKYCLMSVQGCFTDFHIDFGGTSVWYHILRGGKVFWLIPPTPPNLE
MYENWVLSGKQGDIFLGDKCYDCQRIELKQGNTFIIPSGWIHAVYTPEDTLVFGGNFLHS
FNIPMQLNIYSIEDRTRVPSKFRYPFYFEMCWYVLERYLYCQTNISHLTPEFQKHSLGIG
LTQADHEANDQTKNGSNGVDSEMEVKESIIKEEEVLQEEASKVAPPQPRLTPFELEGLWN
LLGKLEELPDQKKCVPVGIMNAAALIRDMRTLLNEHSNDNHKFSYTGEPIVKWPERPSWY
QPPTPPPPVLYRPRLAPALHKPLSQRPTKRSSISALRRRRVRCKRCAACCRKECGTCQFC
QDMRKFGGTGRMKKGCLMRRCLAPALPNTARCAVCGAGEFDESNPSTYSLMECSVCSQIV
HHQCIKDPGDGKINEDLPSCWECPKCYQGKDLESSSDEDSDESEGSTSLPLSKLAYREGI
GVGERVGRGRPCKSSSRSTAPPPSQKLLLQHQQNRKRANALERRLKKRIKLERSKMLTKQ
ATLERSPRLLRSRILSRLRSPTSRLSQGRGRSSSWASGSSYHSSLGSTGSLQQHQQQQKR
QQQQSSMGLVLETKGDSQRGRGRGVRLRGGGAGRGMQGGRSHQELEEESEDSSSSSSSTT
TTTDSSSTSSSSDEEEENGQNIGRGLDKENQPQSRRGGRAAKEKEEEAGELANQNGAEED
KEEELEQDSETRGKDRSFLKVTLQRPTRAKHDLSAIVPKLEAIAPKTTTSTIHNQARILV
RPPIRNPGLCPDPHPNRHLAPHARGKHTDTRPSHPERPEDSKKTWPSRPAKLSNGASSSA
TSELPHLRVPLSALQEGGSEADRENGGSGPGCEREVWVSVFRYLSRADLCVCMAVCKSWY
KWCLDKRLWARIDLSIKRTVTPQALTGIIKRQPVTLDLSWTNISKKQLNWLVGRLPGLKD
LMVAGCSWLTISALCSCGCPLLRSLDLRYADGVKDAQIRDLVTPPGCDNRSQFRTMQCLR
LAGLDISDSTLRLVIRHMPHLTKLDLSHCNSLSDHSINLLTAVGSSTRNTLTELNLGGCS
RLTDVSLKYLRRLSCISLLDLRGCKGVSRQACEAFISELSVNALYCLSDEKLIQRIS
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
atggaggaccctcatacacggtacagcaaacgcctgcgtacaggcacgcgccgccgctac
caggacgatggaatctcagatgatgaaatcgaagggaaacggatgttcgacctggacgag
aagttggtgtgtgccaggtttaaatctgacttggtcaaacacatggatggaaaagatttc
acatttgagtacattcagagggaaggactcagagaccccattatctttgacacagctgat
ggccttggcatacaaatgccagatcctgatttcagtgtgagtgatgtcaagttgtttgtt
gggagtcgacgcattgtagatgtgatggacgtgaacacccagaagggaatcgagatgtcg
atggctcagtggcgacgctattatgacacgccgccgtctgaaagagaaaaactttacaac
gtcatcagtctggagttcagccacaccaggctggagaatctggtgaaacgtccggcttcg
gtggaccttattgactgggtggacaacatgtggccccgccacctcaaggagagacagaga
gactccactaattccatcatagagatgcattatcccaaagtacagaagtactgtctcatg
agtgtgcagggctgcttcacagatttccacattgactttggaggcacttcagtgtggtac
cacatcctgcgaggaggaaaggtgttctggctgattccacccacacctccaaacctggag
atgtatgagaactgggttttatctggaaaacaaggggacatcttcttgggggacaagtgt
tatgactgtcagaggattgagctcaagcaaggcaacaccttcataatcccatcagggtgg
attcatgccgtgtacacaccagaggacacgttggtgtttgggggaaatttcctccacagc
tttaacatcccaatgcagctcaacatctacagcatcgaggatcgcactcgggtgccttca
aagttccgctatccgttctactttgagatgtgttggtacgtcctggagagatacctctac
tgtcagaccaacatctcccacctcactcccgagttccaaaaacactccttgggcattgga
ctcacacaggctgaccacgaagccaatgatcaaactaagaatggcagtaatggagttgac
agtgaaatggaagtcaaggagagcataatcaaggaggaagaggtcttacaagaagaggcc
tccaaagttgccccacctcagcccaggctgactccctttgagctggagggactgtggaac
ctgttggggaagctggaagagctgccggaccagaagaaatgtgtacccgtaggcatcatg
aatgctgcagccctgatcagagacatgaggactctcctgaacgagcactccaatgataac
cacaagttctcctacactggagagcccattgtgaagtggcccgagaggccgtcatggtac
cagccccccaccccccctcctcccgtcctttaccgtcctcgcttggcccccgccctccac
aagcctctgagccagaggcccaccaaacgctcctccatctcggccctgaggcgccgacgg
gtgaggtgtaagcgctgcgccgcctgctgcaggaaggagtgtggcacctgccagttctgc
caagacatgaggaagttcggtggcaccggacgcatgaagaagggttgcctgatgagacgg
tgtctagcgcctgccttgccgaacacagcgcgatgtgccgtatgtggagcaggggagttt
gatgaatcaaatccgagcacctactcactgatggagtgttctgtctgctcgcagattgtc
catcatcaatgcattaaggaccccggtgatgggaagatcaatgaagatttgcccagctgc
tgggaatgtcccaaatgttaccaaggcaaagacttggagtcttccagcgatgaggacagt
gatgagtcggagggctccacctccctgcctctgtccaaacttgcctaccgggaaggcatc
ggtgtaggggagagggtgggacgaggaagaccttgcaaatcctcatcccggtccacagca
ccaccaccttctcagaaacttctgctacagcatcaacagaaccgcaaaagagcgaatgca
ctggagcgcagactaaagaagaggattaaactagagcgcagcaaaatgctaacgaagcag
gcgaccctggagcgatctccccggctgcttcgctccaggattttgtcccgtctccgctct
ccaaccagcagactatctcagggcagaggccggagctccagttgggccagtggctcctct
taccacagctccctgggaagtactgggtctctccaacagcatcagcagcagcagaaacgg
cagcagcagcagtcttccatgggtctggtacttgaaactaagggagactcccagagaggg
aggggcagaggggtcaggctgcgaggaggaggagcaggaagaggaatgcaaggtggtcga
agccaccaagagttggaggaggagagcgaggacagcagcagcagcagcagttccaccacc
accaccaccgacagcagcagcaccagcagcagcagcgacgaggaagaggagaacgggcag
aacattgggaggggtttggataaagagaatcagccccagtcgaggcgaggagggcgggca
gccaaagagaaggaagaggaggcaggcgagctggccaaccaaaacggcgcggaggaggac
aaggaggaggagctagagcaggacagtgaaacaaggggcaaagaccggtcctttcttaaa
gtgacactccaaaggccaaccagggccaaacacgacctgtcagccatcgtccccaaatta
gaagccatcgcccctaagaccaccacatccacaatacacaaccaggcgagaatcctcgtc
aggccccccatcagaaaccccgggttgtgtcccgatccacaccccaacaggcacttggcc
cctcacgctcgcggtaaacacacagacactcgcccctcccacccagagaggccggaggac
tccaaaaaaacgtggcccagcagacctgctaaactgagcaatggcgcctcgtcttcggcg
acttctgagcttccccatctccgcgtacctctatccgccctgcaagaaggagggagcgag
gccgacagggagaatggcggcagcggaccgggctgtgagagggaggtgtgggtgtccgtc
ttccgttacttaagtcgagcagatctctgcgtctgcatggctgtctgcaagagctggtac
aaatggtgtttagacaagcggctttgggcacggattgacctgagcatcaaacgcaccgtt
actcctcaagcgctcacaggcatcataaagagacagccggtcacactggatctgtcttgg
actaacatctctaaaaaacagctcaactggcttgttggtcggctgcctgggctgaaggat
ctgatggtggccggttgttcctggttaactatttcagctctctgctcctgtgggtgtcct
ctcctgcgttctttggacctgcggtatgcagacggagtcaaagacgcgcagatcagggat
ctagtcacccctccaggttgtgacaatcgtagtcagtttcggaccatgcagtgtttgcga
ctagcgggcctggacatcagcgactccactctacgcctggtgatccgtcacatgccccat
ttaacaaagctggacctctcccactgcaacagtctcagcgaccactccatcaacctgctg
acggcagtgggctcgtccacacgaaacacgctcacagaactcaacctgggaggttgcagt
agactgactgatgtgagtctaaagtatctccggcgtctctcgtgcatctcgctgcttgac
ctgcgaggctgtaaaggtgtctcccgccaggcctgtgaggccttcatctccgagctgtcc
gtcaacgcgctctactgcctgtcagatgaaaaactgatccagaggatttcctaa
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integrated database retrieval system
