Pungitius pungitius (ninespine stickleback): 119210567
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Entry
119210567 CDS
T07626
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta isoform X1
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04010
MAPK signaling pathway
ppug04020
Calcium signaling pathway
ppug04510
Focal adhesion
ppug04518
Integrin signaling
ppug04540
Gap junction
ppug04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
119210567 (pdgfrb)
04020 Calcium signaling pathway
119210567 (pdgfrb)
09133 Signaling molecules and interaction
04518 Integrin signaling
119210567 (pdgfrb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119210567 (pdgfrb)
04540 Gap junction
119210567 (pdgfrb)
09142 Cell motility
04810 Regulation of actin cytoskeleton
119210567 (pdgfrb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ppug01001
]
119210567 (pdgfrb)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ppug04090
]
119210567 (pdgfrb)
Enzymes [BR:
ppug01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
119210567 (pdgfrb)
Protein kinases [BR:
ppug01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
119210567 (pdgfrb)
CD molecules [BR:
ppug04090
]
Proteins
119210567 (pdgfrb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
Ig_2
I-set
ig
C2-set_2
V-set
VEGFR1-3_N_Ig-like
Adeno_E3_CR1
RIFIN
VEGFR-1-like_Ig-like
Adeno_E3_CR2
Motif
Other DBs
NCBI-GeneID:
119210567
NCBI-ProteinID:
XP_037316615
LinkDB
All DBs
Position
2:complement(34173200..34193914)
Genome browser
AA seq
1099 aa
AA seq
DB search
MRRVKVPTVHLTVTLTALFYFCTELRCLEISPDDKEFVLAEGSSLTLTCSGSEDTMWEFK
TDDAPHFQAEQIQNDGQSIQVVKSDSTTSVLTLWNVSWERTGVYQCNDRHTGETKEVAVF
VPDADVWFVKSSHGMVTKTSEETTIPCVVTNPTINVTLYEKDTDLPIRGLYVPSEGYKAP
LEERTYVCRGELRGEVKESQDFFVYSIFVPEAIDPYINASKTILKQGEPLTVNCTVNGVE
LIYFSWDIPNRELVEVVPLTDFLPGTAMRSCLIFPRATLAHGGAYACHVRESIQDQKAST
SVNITVLERGFVDVKTAQKNNISAKLQENVELRVEIEAYPPPQVRWSKEGILIKRDKTIS
TGRDHEISYVTVLTLVRVRKEQKGRYTVLVTNGDDTKEVTFDLEVQVPAQIKDLTDHHLP
GKKHLVTCVAEGVPTPTIQWYSCDSMHQFSNQTAVWHPLIPEPGVLSILTNVTYSETRRT
SQVRSQVTFHQPQQVTVRCETNNQAGLTDRRDVKLVSSTLYSQVAVLAAVLALVVIIIIS
IIILIALWRKKPRYEIRWKVIESVSQDGHEYIYVDPIHLPYDLAWEMPRDHLVLGRTLGS
GAFGRVVEATAYGLTHSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLL
GACTKHGPLYLVTEYCRYGDLVDYLHRNKHTLLQCQAEKNQDDGCLVSGGSTPLSQRKGY
VSFGSESDGGYMDMSKDEPTIYVPMQIEQMDNIKYADIQPSSYDSPYQQDIYQEQGGSRL
DLAISDSPMLTYDDLLGFSYQVAQGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLA
RDIMHDSNYISKGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLP
MNELFYSALKRGYRMAKPAHASDEVYDIMKKCWDEKYEKRPDFSSLVHSVGNMLADSYKK
KYSQVNDNFLKSVHAAVARTKPRLSSPFPIANPAFGTPPPHYMPPDLYSPGEFRQEVDSQ
EVITLCNEYIIPIPDPKPEDVFPFGPPESPASSLALEETDSMSQDTADTLPEEDRLEDTS
ERDALLGFSGTPEVEDSFL
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgaggagggtgaaggtccccacggtccatctgacagtcacacttacagctctcttctac
ttctgcaccgagctgcgttgtctggagatctcccccgatgacaaagagttcgtcctggcc
gagggttcctctctcactctcacctgctccggctcagaagacacaatgtgggagttcaag
acggacgacgcgccgcacttccaagccgaacaaattcaaaacgatggtcaaagtatccaa
gtagtgaaaagcgactccacaaccagtgttttgaccttgtggaacgtgagctgggagcgc
acaggggtgtatcagtgcaacgatcgacacactggagaaaccaaggaggtggcagttttt
gtcccagacgcggatgtgtggttcgtaaagagctcacatggtatggtgacaaagaccagt
gaggagaccaccatcccctgcgtggtcaccaaccccaccatcaacgtcaccctgtacgag
aaggacactgatctgcccatcagggggctttatgtgcccagtgaggggtacaaggcaccg
ctggaggaaaggacctatgtgtgtcgaggagagctgcgcggcgaggtgaaagagtctcaa
gacttcttcgtctacagcattttcgtcccagaggccatcgacccctacatcaatgcgtca
aagaccatcctgaagcagggcgaaccgctgacagtgaactgcacagtgaacggagtggag
ctgatctatttttcctgggatatccccaacagagagcttgttgaggtcgtgccactcaca
gatttcctacctggcacggccatgcgctcctgcctcatcttccctcgcgccacgcttgcc
cacggcggagcctacgcctgccatgtccgcgaaagtatccaagaccagaaggcctctacc
agcgttaacatcactgtgctcgagcgaggctttgtggatgtgaagactgctcagaaaaac
aacatttcagcaaagctgcaagagaacgtggagttgagggtggagattgaagcctaccct
ccacctcaggtccgctggagcaaagaaggaatcttaatcaagagagataaaaccatctca
accggaagagatcatgaaatcagctacgtcactgtgctcaccttggtgagggtgaggaag
gagcagaaaggccgctacactgttctcgtcacaaacggagatgacacaaaggaagtgacc
tttgacctggaggtccaagttcccgctcagattaaagaccttaccgaccaccacctcccc
gggaaaaagcatttggtgacctgtgtggccgagggggtcccaaccccaaccatccagtgg
tacagctgtgacagcatgcaccagttcagcaaccaaacagcagtttggcatccactgata
ccggagcccggggtgctgagcatcctgaccaatgtcacctacagcgagactcgtagaacc
agccaggtgcgcagccaggtgaccttccaccagccgcagcaggtcacagtgcgctgcgag
accaacaaccaagcagggctcacggacagaagggacgtcaaactggtgtccagcaccctg
tactcccaggtggcagtattggctgctgttttagccttagtggtcatcattatcatatct
atcatcatactcattgctctctggagaaagaaacctcgctatgagatcagatggaaggtg
atagagtcagtgagccaggacggtcatgagtacatctacgtggaccccatccacctgccc
tacgacctggcttgggaaatgccacgagaccacctggtgcttggtcgcactcttggatcg
ggagcctttggcagggtggtcgaggcaactgcgtacggtctcactcattcccagtccagc
acaaaagtggctgtgaaaatgctgaaatccacagccaggaggagtgagactcaggctttg
atgtcagagttgaagatcatgagtcacctgggtcctcacctcaacattgtcaacttgctg
ggagcctgcaccaaacacggccccctgtatctggtgactgagtactgtcgctatggcgac
ctggtggactacctgcacaggaacaaacacaccctcctgcagtgtcaagcagagaagaac
caagacgacggctgcctggtctctggaggaagcactccgctcagccagaggaaaggctac
gtgtcctttgggagtgagagtgacggaggatacatggacatgagtaaagatgagcccacc
atctacgtgcccatgcagatagagcagatggacaacatcaagtacgcagacatccaaccc
tcttcctacgattcgccctaccagcaggacatctatcaggaacaaggtggcagcaggttg
gacctggccatcagtgactctcccatgctcacctacgacgatctgttgggcttcagctac
caagtggcccaggggatggagtttctcgcctccaagaattgcgtccatcgtgacctcgct
gccaggaacgttctgatctgtgagggcaaactggtgaagatctgtgactttggtctggcc
agagacatcatgcatgattccaactacatctctaaaggcagcaccttccttcccctaaag
tggatggctccagaaagtattttccataatttgtacaccacgctgagtgacgtgtggtca
tacggcattcttctttgggagattttcaccctaggaggaaccccttaccccgatttgccc
atgaatgagttgttctacagcgctttgaagcgaggctaccgaatggccaaacctgcacac
gcctctgatgaagtttatgacatcatgaagaagtgctgggacgagaagtatgagaagagg
cccgacttctcctccctggtccacagtgttgggaacatgttggcagatagctataaaaag
aaatacagccaagtgaacgacaacttcctgaagagtgtccacgcggcggtcgcccgcact
aagcccagactctcctccccgtttccgatcgccaacccggccttcggcactccacccccc
cattacatgcccccggacctctacagccccggcgagttcagacaagaggtggactcacag
gaagtcataaccctatgcaacgaatacatcattcccatcccagaccccaagccggaggac
gtcttccccttcgggccgccagagagtcctgcaagctctctggctctggaggagactgac
tccatgtcccaggacactgcagacaccctcccagaggaggaccggctggaggacaccagt
gagcgagacgccctgttgggtttttctgggacacccgaggtagaagacagcttcttgtag
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