Pungitius pungitius (ninespine stickleback): 119214070
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Entry
119214070 CDS
T07626
Symbol
col9a1b
Name
(RefSeq) collagen, type IX, alpha 1b
KO
K08131
collagen type IX alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04510
Focal adhesion
ppug04512
ECM-receptor interaction
ppug04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119214070 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119214070 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119214070 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ppug00535
]
119214070 (col9a1b)
Proteoglycans [BR:
ppug00535
]
Extracellular matrix (ECM) proteoglycans
Others
119214070 (col9a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
119214070
NCBI-ProteinID:
XP_037321395
LinkDB
All DBs
Position
13:complement(10484303..10495850)
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AA seq
680 aa
AA seq
DB search
MMARAHSVRGPLLGLLLQLVLICSAQRSQGPAGPPGPAGVPGIDGIAGERGDDGEEGPPG
PDGDAGKPGSSGLPGIPGNDGLTGPFGDPGPDGPPGQKGEPGKVGPRGATGVGPDGPPGP
PGPAGLLGDLGKAGPLGSIGVRGPQGPRGPAGPRGASGMQVSADLCPNSCPPGTSGHPGL
PGMKGHKGVKGEAGEPGKQGHKGEDGDQGGQGEVGSQGPRGPQGIRGAMGMIGHKGEMGA
RGLDGDPGPQGVAGATGDHGQRGGMGEPGPKGETGIQGQRGISGVPGPKGGAGLPGVDGR
EGIPGMPGGKGGIGKSGVPGEVGLQGLPGLPGVPGPNGLSGPKGDVGQAGFPGTLGPAGK
EGERGEQGELGPVGPIGEPGALGAQGPIGSAGKPGARGPKGDPGLPGLPGPSGLPGVKGE
RGERGDGGPKGEQGSQGDEGNPGEKGDHGEAGESGSKGEVGNPGEVGKRGPEGSRGQPGI
EGPPGSPGPRGMQGNRGQPGVRGSQGPAGKEPSDQHIKQVCMRVMQEQLAQLAASLRRPE
SGVAGLPGKPGPPGQPGPPGDNGFPGLSGSRGLPGLKGPTGHIGMKGPKGEMGDRGSRGP
TVRGPKGQQGPPGLPGEPGKPGYGQDGRDGQRGPPGVPGQHGVPGPPGGAGPNGYCDPSA
CNLQAGAAHQSLDVKGPAGN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgatggctcgggcccacagtgttagagggccacttttgggtctgcttctgcagcttgtc
cttatctgctccgctcaaaggagccaaggaccggctggccctcctggacctgccggtgtc
ccaggaattgatggcattgctggggaaaggggagatgatggcgaggagggacctcctgga
cctgatggagatgcaggtaaacccggctcttcgggattacctggaattcctggaaatgac
ggtttgaccggcccttttggagatcctgggcccgatggtccccccggacagaaaggtgaa
cctggaaaggttggacctcgtggagccactggtgtcgggcctgatggaccccccggacca
cctgggcctgcaggacttctgggtgatttgggaaaagctggaccacttgggtccataggt
gtgagagggccacagggcccccgtggaccagcggggcccagaggtgcgtctggaatgcaa
gtcagtgctgacctgtgtccaaactcttgtccacctgggacctcgggtcatcctggactt
cctggcatgaagggtcacaaaggtgtaaaaggtgaagcaggtgaacctgggaaacaaggg
cacaagggtgaggatggagaccaaggaggtcaaggggaagtcggatctcaaggaccaagg
ggccctcaaggaattcgcggagccatgggaatgattggccacaagggagaaatgggagct
cgaggtcttgatggagatccaggtccccagggtgttgcaggggcaactggggatcatggt
caacgaggcgggatgggtgagcctggacctaaaggtgaaacgggtattcaagggcagaga
ggaatctcaggtgttccagggccaaagggaggcgctggcttgccgggtgtggacggccgc
gagggtattcctgggatgcccggaggaaagggaggcattgggaagtcaggcgtccccgga
gaggtcggacttcaggggcttcctggtttgcctggtgtacctggaccaaatggcttaagt
ggtcctaagggagacgtaggtcaagcaggcttccccgggacattgggtcccgctggcaag
gaaggcgagcgcggagagcaaggcgagctcgggcctgtcggaccgataggtgaacctgga
gctttgggagcacaaggccctataggttcagccggcaagccaggtgctaggggacccaaa
ggtgaccccgggcttcccggtctccctggtccttctggcctgcccggggtgaaaggagag
aggggagaacgtggagatggaggacccaaaggagaacagggaagccaaggggatgagggg
aaccccggagagaaaggggatcatggcgaggcaggagaatctggatctaaaggagaggtc
ggtaaccccggcgaagttggcaaaagaggtcctgagggcagtcgaggtcagccgggaatc
gaggggccgcctggctcacctgggccgaggggcatgcaggggaacaggggtcaacccgga
gtcagagggtcccagggccctgcggggaaagagccaagcgatcagcacatcaaacaagtc
tgcatgcgagtcatgcaagaacagctggcccagttagccgctagtttaaggaggccagag
tctggcgtagccggtttacctggaaagcctggacctccagggcaacctggtcctcccgga
gacaatggcttccctgggctgagtggatccagaggccttccaggactcaaagggccaaca
ggacacattggaatgaaagggcccaaaggtgaaatgggagacagaggctccagggggccc
actgtgcggggacctaaaggtcagcaaggacctcccggacttcctggtgagccgggcaaa
cctggctacggtcaagacggtcgggacggacagaggggacctcccggcgtccctggacag
cacggcgtacccgggcctcccggcggggccggtcccaatggctactgcgacccttcggct
tgcaacctgcaggcgggggccgcccaccagtctctggatgtgaagggacctgcagggaac
taa
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