Pungitius pungitius (ninespine stickleback): 119218067
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Entry
119218067 CDS
T07626
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04510
Focal adhesion
ppug04512
ECM-receptor interaction
ppug04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119218067 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119218067 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119218067 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ppug00535
]
119218067 (col9a1a)
Proteoglycans [BR:
ppug00535
]
Extracellular matrix (ECM) proteoglycans
Others
119218067 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
119218067
NCBI-ProteinID:
XP_037328102
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All DBs
Position
9:complement(19840129..19851562)
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AA seq
687 aa
AA seq
DB search
MSRSGICRESLLVILLQVVLICSAQRGPVGPRGPPGPMGVAGVPGVDGIDGDRGEDSKVD
GGPGPDGDDGRDGAPGAAGLPGADGPVGPPGDPGLGGPKGQKGQQGPIGSVGAKGVGPDG
LDGLPGTDGLPGELGKVGAPGSRGGRGPVGLPGSAGPRGPPGVYKGEDLCPNACPAGLNG
HSGLPGMKGHKGVKGESGEPGRQGHKGEEGEQGPAGEVGAQGPPGPGGKRGLQGIPGPKG
DRGARGQQGDGGPRGIQGAPGDRGQRGAVGELGPAGVRGDSGPSGIRGVPGPKGEPGLAG
PDGREGIPGLPGSKGLTAKNGAPGVAGPQGLPGLPGTWGQKGVSGAAGIPGDPGAVGEMG
SPGKQGERGEQGEVGPVGARGGPGARGERGPGGPLGSPGPRGIKGDPGLPGLPGPAGYRG
EKGDRGAVGLDGPKGDQGSAGAEGTAGDAGELGDQGEPGEKGSTGPPGQTGNKGPEGGRG
QQGKEGKPGQPGPRGMQGDAGVPGLPGGQGPAGKSPTDTDIKRVCMRVMQEQLAQLAASL
RRPESGISGIPGPPGPPGPPGPTGENGFPGHGGSRGLPGLKGPAGLIGRKGPKGDQGDRG
DRGPTERGPKGAPGAPGLPGEPGRAAYGTDGRDGERGPRGVPGVPGVPGPPGTAGATGYC
ASSQCVPPMVAAPVFAKDSGMKGPGEM
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgctccgggatctgtcgggagtctttgctggtgattttgctgcaggtggtgttg
atttgctcggctcagaggggcccggtcggtcccagaggccccccggggccgatgggagta
gcaggcgtgcccggagtggacggcattgatggcgaccgaggagaagactccaaggtggac
ggaggaccgggacccgacggagacgacggccgggacggagctccgggagctgcaggcctt
ccgggggccgacggacccgttggacctcctggagatccgggcctggggggccccaaagga
caaaaaggacaacaggggcccatcgggtctgtgggggcgaagggggtcggacccgacggg
ctggatggcctcccgggcacagacgggctgccaggagaactcggcaaagttggagcacct
ggatcaagaggcgggcgaggtcctgtgggtctccctggttctgctgggccgcggggtcct
ccgggtgtgtataaaggcgaggacctgtgtcccaacgcctgtcccgcaggactcaacgga
cattctggcctccccggcatgaagggccacaaaggggtcaaaggtgaatccggtgagccc
ggaagacaaggacacaagggggaggaaggagaacaaggaccggcgggggaagtcggagct
caaggaccaccgggcccaggcggaaagagaggcctccaaggaatccccgggcccaaaggg
gacaggggagctcgtggacaacaaggtgatggaggtcctcgaggaatccagggagcccca
ggcgaccggggtcaaaggggagccgtcggggagctcggaccagcgggggttcggggggat
tccggtccgtcggggatcagaggagtgccggggcccaagggagagcctggcctcgccggg
ccagatggccgtgagggaatacctggtctgcccggatccaagggtctcactgcgaaaaat
ggggctccgggtgttgctggcccacaagggcttcctggtttgccaggcacttggggccag
aagggagtcagtggtgcagcgggaatcccaggtgatccaggtgctgttggggagatgggg
tctccagggaaacaaggcgagcgaggcgagcagggcgaggtgggaccggtcggagcccga
ggaggaccaggcgcacgaggagagcgagggcccggcgggcctctgggatcaccaggaccc
cggggaatcaagggggatccaggcctccccggtcttcctggtcctgctggttaccgcggt
gagaagggcgacaggggggccgtcggcctcgatggtccgaaaggagaccagggctctgca
ggcgctgaaggaacagcgggcgatgccggagaactgggggatcaaggagaaccgggggag
aaaggatcgaccggccccccgggccagacggggaacaaaggacccgagggcggcagagga
cagcagggcaaagagggcaagccgggccaaccggggcctcgtggcatgcagggcgacgcg
ggggtacctggcctgccgggggggcagggcccagcggggaaatctccgacggacacagac
atcaaacgggtctgcatgagggtgatgcaagagcagctggcccagctggcggcgagcctg
aggaggcccgagtccggcatctccgggatccccggcccccccggcccgcccggacccccg
ggccccaccggggagaacggcttccccggacacggcggctctcggggactgcccgggctg
aagggtccggccgggctcatcgggcgcaaaggacccaaaggtgaccagggcgaccgaggg
gacaggggacccaccgagagggggcccaaaggggcgccgggggccccgggtctaccaggc
gaacccggccgagcggcttacggcacagacggtcgcgacggggagaggggcccccgcggc
gtccccggcgtgccgggagtccccgggccccccggcaccgccggcgccaccggttactgc
gcgtcgtcccagtgcgtcccgcccatggtggcggcgccggtgttcgccaaggactccggc
atgaagggccccggtgagatgtga
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