Pungitius pungitius (ninespine stickleback): 119218303
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Entry
119218303 CDS
T07626
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X3
KO
K04834
voltage-gated sodium channel type II alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ppug04040
]
119218303 (scn1lab)
Ion channels [BR:
ppug04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
119218303 (scn1lab)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
ATP-synt_B
GPHH
Spem1
IQ
SieB
New_glue
Motif
Other DBs
NCBI-GeneID:
119218303
NCBI-ProteinID:
XP_037328540
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All DBs
Position
3:23598419..23629128
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AA seq
1880 aa
AA seq
DB search
MLMSNSSDVHAADVRAAFMPCCVVTVHLILQVCNRVCTPRQCFSSAHVQSIASFENYLSD
TRYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLS
VFALIGLQLFMGNLRQKCVRLPLTANATNSSIASAAGGGDAALFNGTLLDINATEIPFNW
TEYMNDKSNYYFLPGRRDALLCGNGSGAGLCPEGFTCIKAGRNPDYDYTSFDTFSWAFLS
LFRLMTQDYWENLYQQTLRAAGKPYMIFFVLVIFLGSFYLVNLILAVVAMAYDEQNQATI
EEAQQKEEEFQAMLEQLKRQQEEAQVAAAAATESGEYSGRGAPTSESSSGMSKLSSKSAK
ERRNRRKKRRQREEEEGRGAHDKFHKSESEDSIKRTSFRFSIDANRLSYEKRCSSPNQSL
LSVRGSLFSPRRNSRASLFSFHGRARDMGSENDFADDEHSTFEESDSRRGSLFLPRRLER
RCSAVSQTSLGAPRIILPANGKMHCAVDCNGVVSLVGGTSVTTSPGGLRLPEGTTTDTEL
KKRRPGFRKPSMDYLDEPVARQRAMSVASILTNTMEELEESRQKCPPCWYRFANTCLIWD
CCPTWLKIKDIVSTVVMDPFVDLAITICIVLNTLFMAMEHYPMTKEFNSVLSVGNLVFTG
IFTAEMCFKIIALDPYYYFQQGWNIFDGIIVSLSLMELGLANVEGLSVLRSFRLLRVFKL
AKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKISEDCQL
PRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCLIVFMMVMVIGNLVVLNLFLA
LLLSSFSADNLAATDEDSEMNNLQIAVGRIQRGVAFLKSAFRQFLQSLCFGGGGKGCGLA
EETKTLDELHSNGKGNCVSNHTSVEITKDPSVVYVTEGNGRPGGGLVVGLGLGGDSAEKF
PDDECDYMSFIHNPSLTVTVPIAVGESDFENPNTEEFSSDSSDVEDSIEKLDVEPQRLSS
SEGSTVDIRPPGDGVDSVELEPEESLEPEACFTEGCLIRFPCCQIDEEEEHFKRWWTLRK
TCFIIVEHNWFESFIIFMILLSSGALAFEDIYIEQRKTIKIVLEYADKVFTYIFILEMLL
KWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVANALGYSELTAIKSLRTLRALRPLRALSR
FEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYYCVNTTTDLVFPLDV
VNNMTECLNLANDSARWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRDVEDQP
EYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAM
KKLGSKKPQKPIPRPANAFQGCVFDCITKQAFDIVIMILICLNMVTMMVETDNQTKEMDK
TLYRINLVFIVLFTGECMLKMISLRHYYFTIGWNIFDFVVVILSIVGMFLSEIIEKYFVS
PTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSN
FAYVKHEAGIDDMFNFETFGNSMICLFQITTSAGWDGLMAPILNKREPDCDSEMEHPGNN
HKGNCGNPSVAIFFFVSYIIICFLIVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEV
WERFDPDATQFMEYSKLSDFADALDPPLRMAKPNMLHLISMDLPMVSGERIHCLDILFAF
TKRVLGESGEMDVLRGQMEERFMASNPSKVSYEPITTTLRRKQEDMAAVIIQRAFRHYKI
RLAMKKASAIYKERLKEGARDPDKDLMVIGKFPENSTSEKTDMTPSTASPPSYNSVTKSY
NDKYEKENREKENKGRDRNK
NT seq
5643 nt
NT seq
+upstream
nt +downstream
nt
atgctgatgtctaatagctcagacgttcatgctgctgatgtgagagctgcatttatgccc
tgctgtgttgtaactgtgcatttgatcctgcaggtatgtaacagagtttgtacacctagg
caatgtttcagctctgcgcacgttcagagtattgcgagctttgaaaactatctcagtgat
accagatatgtcacagagtttgtggacctgggcaatgtctcagcgctgcgaaccttcagg
gttctgcgagccttgaaaactatatcagtcatcccaggcttgaagaccatcgttggtgcg
ctgatccagtcggtgaagaagctgtcggacgtcatgatcctcaccgtcttctgcctgagc
gtcttcgccctcatcggccttcagctcttcatgggcaacctgaggcagaagtgcgtgcgc
ttgccgctcactgccaacgccaccaacagcagcatcgccagcgcagccggcgggggcgac
gcggcgctcttcaacggcaccctgctggacatcaacgccacagagatccccttcaactgg
acagagtacatgaacgacaagagtaattactatttcctaccggggcgtcgggatgctcta
ctctgtgggaacggcagcggcgctgggctctgtccagagggcttcacgtgcatcaaagcc
ggccgcaacccagactacgactacaccagcttcgatacgttcagctgggccttcctctcc
ctgttccgcctcatgacccaggactactgggaaaacctctaccagcagactttgcgggcg
gcggggaagccctacatgatcttctttgtgctggtgatcttcctgggctccttttacctg
gtcaacctgatcctggccgtggtagccatggcttatgatgagcagaaccaggcgaccatc
gaggaggctcagcagaaggaggaggagttccaggccatgctggagcagctgaagagacag
caggaggaggcgcaggttgccgcggcagcagccacggagagcggggagtacagcgggaga
ggcgcccccacctccgagtcgtcctcggggatgtcgaagctcagctccaagagtgccaag
gagcgacgcaacaggcggaagaagaggaggcagagagaggaagaggaggggaggggggcc
cacgacaaattccacaagtctgagtctgaggacagcatcaagagaaccagcttccgcttc
tccatagacgccaacaggctgtcgtatgagaagaggtgctcctcgcccaaccagtctctc
ctcagcgtccgcggatccctcttctcaccgcggaggaacagccgcgccagcctcttcagc
ttccacggccgcgcccgcgacatgggctccgagaacgacttcgccgacgacgagcacagc
accttcgaggagagcgacagccgccgcggctccctgttcctgccgcggcgcctcgagcgc
cgctgcagcgccgtcagccagaccagcctcggggcgccgcgcatcatcctgcccgccaac
ggcaagatgcactgcgccgtggactgcaacggcgtggtgtctctggtcggtgggacgtcc
gtaacgacctcccctggaggtctccggctgcccgagggtacaactacagatactgagctc
aagaagcggcggccaggttttcgcaagccatccatggattatttggacgaaccggtggcc
cggcagagagccatgagcgtggccagtatcctcaccaacaccatggaagagctggaggag
tcgagacagaaatgccccccttgctggtaccgatttgccaacacctgcctgatctgggac
tgctgccccacgtggctgaaaatcaaggacatcgtcagcacggtggtcatggaccccttt
gtggacctggccatcacaatatgcattgtgctcaacaccctgttcatggccatggagcac
taccccatgactaaagaattcaatagcgtcctctcagtgggaaacttggtgttcacaggc
atcttcacggcagaaatgtgcttcaagatcatcgccctggatccctactactacttccaa
cagggctggaacatctttgacggcatcatcgtgagcctgagcctgatggagctcggctta
gccaacgtggagggcctatccgtcctgcgctccttccgattgctgagggtcttcaagctg
gccaagtcatggcccactctgaacatgctgatcaagatcatcggcaactcggtgggggcc
ctggggaacctgacgctggtgctggccatcatcgtcttcatcttcgccgtggtcggcatg
cagctgttcggcaagagctacaaggagtgcgtgtgtaagatttccgaagactgccagctg
ccccgctggcacatgcacgacttcttccactccttcctcatcgtgttccgggtgctgtgc
ggggagtggatcgagacaatgtgggactgcatggaggtggccgggcagagcatgtgcctg
atagtcttcatgatggtcatggtcattggaaacctggtggttttaaacctcttcctggct
ctcctcctgagctcattcagcgccgacaacctggcggcgactgacgaggacagcgagatg
aacaacctgcagatcgccgtgggccggatccagcggggcgtcgcgttcctcaaatccgcg
ttccggcagttcctccagagcctctgctttggcggcggcgggaagggctgcggcctggcg
gaggagaccaaaacgctggatgagctgcacagcaacggcaagggcaactgcgtctccaac
cacacgtcggtggagatcaccaaagaccccagcgtggtgtacgtgacagagggaaacggg
cgcccgggaggagggctggtggtcgggctcgggctcggcggcgactccgcggagaagttc
ccggacgacgagtgcgactacatgtcgttcatccacaaccccagcctgacggtcacggtg
cccatcgcggtgggcgagtcggacttcgagaaccccaacacggaggaattcagcagcgac
tcgtcggacgtggaggacagcatagagaagctcgacgtagagccccagcgcctgagctca
tcggaggggagcacggtggacatccgccccccgggagacggggtggactcggtggagctg
gagccggaggaatccctggaaccggaggcctgcttcacggagggctgcctgatcaggttc
ccgtgctgccaaatcgatgaggaggaagagcattttaagcgctggtggaccctcaggaaa
acctgctttatcatagtggagcacaactggtttgaatccttcatcatattcatgatcctg
ctaagcagcggagcgctggcgttcgaggacatttacattgagcagcggaagaccattaaa
atcgtgctggagtacgcggacaaggttttcacttacatcttcatcctggaaatgctgctg
aagtgggtggcctacggcttcgtcaagtatttcaccaacgcctggtgctggctggacttt
ctcattgtagacgtgtccctggtgagcctcgtagcgaacgctctgggctactctgagcta
accgccatcaaatctctgaggacactgcgagccctccggcccctgagggcgctgtctcgg
tttgagggcatgagggtcgtggtcaacgcgctgctgggggccattccctccatcatgaac
gtgctgctggtctgcctcatcttctggctcatcttcagcatcatgggcgtcaacctgttc
gcggggaagtactactactgcgtcaacaccaccacggatttggtgttccccctcgacgtg
gtcaacaacatgacggagtgtctgaacctggcgaacgacagcgcgcgctggaagaacgtc
aagatcaactttgacaacgtgggggccggctacctggctctgctgcaagtggcaaccttt
aaggggtggatggacatcatgtacgcagcggtggactctcgagatgtggaggatcagccc
gaatacgaagtgaacttgtacatgtacctctactttgtcatcttcattatcttcggctcc
ttctttaccctcaacctgttcatcggcgtcatcatcgacaacttcaaccagcagaagaag
aagtttggaggtcaggacatcttcatgacagaagagcagaagaaatactacaacgccatg
aagaagttgggctccaagaaaccacagaaaccgatacctcggccggcgaatgcattccaa
ggctgcgtgttcgactgcatcacaaagcaggccttcgatatcgtgatcatgatcctcatc
tgcctcaacatggtgaccatgatggtggagacggacaaccagaccaaggaaatggacaaa
acactctaccggatcaacctggtcttcatcgtgctcttcactggggagtgcatgctcaag
atgatctccttgcgtcactattacttcaccatcggctggaacatatttgactttgtggtg
gtgatcctgtccatcgtaggcatgtttttatccgaaattattgaaaagtactttgtgtcc
ccgacgctgttccgagtgatccgtctggcccggataggccgcatcctccgactcatcaaa
ggggccaagggtatccggacgctcctcttcgccctgatgatgtcgctgcccgctctgttc
aacattggcctcctcctcttcctcgtcatgttcatctacgccatcttcggcatgtccaac
tttgcctacgtcaagcacgaggcgggcatcgacgacatgttcaactttgagacgttcggg
aacagcatgatctgcttgttccagatcaccacgtcggccgggtgggacggactgatggcg
cccatcctcaacaagagggagcccgactgcgacagcgaaatggagcacccgggcaacaac
cacaagggcaactgcggaaacccgtcggttgccatcttcttcttcgtcagctacatcatc
atctgcttcttgatcgtggttaacatgtatatcgccgtcatcctggagaacttcagcgtg
gcgacagaggagagcgccgagccgctgagcgaggacgactttgagatgttctacgaggtg
tgggagcgcttcgaccccgacgccacgcagttcatggaatatagcaagctctctgacttt
gccgacgccctggacccgccgctgcgcatggccaagcccaacatgctccacctgatctcc
atggacctgccgatggtgagcggcgagcgcatccactgcctcgacatcctgtttgccttc
accaagcgagtgctaggcgagagcggcgagatggacgtcctgcgcgggcaaatggaggag
cgcttcatggcctccaacccgtccaaggtgtcctacgagcccatcaccaccaccctgcgc
cgcaaacaagaggacatggcggccgtaattatccagcgagccttccgtcactacaagatc
cgcctggccatgaagaaggcttccgccatctacaaggagcggctgaaggagggagcccgc
gaccccgacaaggacttgatggtcatcggcaagttccccgagaactccacctccgagaaa
acagacatgacaccctcgacggcctcgccgccgtcctacaacagcgtgacaaaatcgtac
aatgacaaatacgagaaagagaacagggaaaaagaaaacaaaggtagagacagaaataaa
tag
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