Pungitius pungitius (ninespine stickleback): 119220242
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Entry
119220242 CDS
T07626
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04510
Focal adhesion
ppug04512
ECM-receptor interaction
ppug04518
Integrin signaling
ppug04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119220242
04518 Integrin signaling
119220242
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119220242
09142 Cell motility
04820 Cytoskeleton in muscle cells
119220242
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ppug00536
]
119220242
Glycosaminoglycan binding proteins [BR:
ppug00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119220242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
119220242
NCBI-ProteinID:
XP_037331988
LinkDB
All DBs
Position
12:16908366..16927939
Genome browser
AA seq
1447 aa
AA seq
DB search
MFSFVDLRLALLLGAAVLLVRAQGEDDRTGGSCTLDGQVFADRDVWKPEPCQLCVCDNGA
VMCDEVICEDTTDCPNPFIPHDECCPICPNDGFQEPQVEGPVGERGPKGDRGPAGPAGKD
GRPGLPGRPGLPGPPGPPGLGGNFSPQMSGGYEEKSPNIGVPGPMGPMGGRGSPGPPGVS
GPQGFNGPPGEPGEAGPAGAMGPRGAPGPPGKNGEDGESGKPGRGGERGPSGPQGARGFP
GTPGLPGIKGHRGFSGLDGAKGDTGPSGPKGETGASGENGTPGAMGPRGLPGERGRNGAT
GAAGARGNDGAAGAAGPPGPTGPAGPAGFPGGPGSKGDAGPQGARGSEGPAGSRGEPGNP
GPAGPAGPSGNPGTDGSAGAKGTPGAAGVAGAPGFPGPRGPPGPQGAAGAPGAKGNTGDL
GSPGAKGEAGAKGEAGAPGVQGAPGPSGEEGKRGSRGEPGAAGARGAPGERGAPGGRGFP
GSDGPAGLKGANGERGAPGPVGPKGSIGESGRNGEPGLQGAKGMTGSPGSPGPDGKLGPA
GATGQDGRPGPPGAVGARGQPGVMGFPGPKGAAGEGGKPGERGAMGPTGATGAPGKDGDA
GAPGPAGPAGPSGERGEQGPGGPPGFQGLPGPQGAIGESGKSGEQGVPGEAGAPGPVGNR
GDRGFPGERGAPGAVGPAGARGSVGSPGNEGAKGDSGAPGAPGAQGPPGLQGMPGERGAA
GLPGLRGDRGEQGGKGVDGAPGKDGPRGLTGPIGLPGPAGATGDKGEPGPVGIPGPPGPR
GGSGERGESGPPGPAGFAGPPGADGQPGAKGESGDNGAKGDAGPPGASGPTGGPGPQGPT
GNSGPKGTRGAAGPPGATGFPGAAGRVGPPGPSGNAGPPGPSGPSGKEGPKGNRGETGPA
GRPGEMGAAGAPGPAGEKGSAGNDGPVGAPGFPGGKGLVGPRGIVGLPGQRGERGFSGMP
GPAGESGKPGPSGPSGERGPSGPMGPTGQPGPAGEPGREGSPGNEGSAGRDGAAGPKGDR
GESGHAGATGAPGPSGAPGPVGPAGKNGERGETGPSGPAGAAGPAGPRGPAGALGLRGDK
GETGEAGERGMKGHRGFTGLQGPPGPAGSSGEQGPAGSAGPAGPRGPSGSAGAVGKDGMT
GMPGPTGPPGPRGRSGEMGPSGPPGPPGPPGAPGAPAGGFDLGFISQHQEKAPDPLRMFR
ADDANVLRDRDLEVDGTLKSLSQQIEQIRSPDGTRKNPARTCRDLKMCNPDWKSGEYWID
PDQGCTLDAIKVYCNMETGETCVTPTQPEVAKKNWYMSKNIKEKKHVWFGEAMNDGFQFE
YGSEGSNPQDVNIQLTFLRLMSTEATQNITYHCKNSVAYMDATVGNLKKAMLLQGSNEIE
IRAEGNSRFTYSVLEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEFGLE
VGPVCFL
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatttgcggctcgcactgctgctcggcgcagcggtgctcctggtc
agggcgcagggcgaggacgaccgcacgggcggaagctgcaccttggacggacaggtgttt
gccgaccgggacgtgtggaagccggagccatgccagctctgtgtgtgcgacaatggcgcg
gtgatgtgcgatgaggtcatctgcgaggacacgactgactgccccaaccccttcattccc
cacgacgagtgctgcccaatctgccccaacgacggcttccaggagccccaggttgaggga
cccgtgggagaacggggaccaaagggagataggggtcctgctggtcccgctggtaaggat
ggtaggcccggcctgcccggtaggcccggtcttcctggccccccaggaccccccggcctc
ggtggaaacttctcccctcagatgtctggtggttatgaggaaaaatctcctaacattggt
gtgcctggaccaatgggccccatgggaggccgtggatcacctggacctcccggtgttagc
ggacctcagggattcaatggcccacctggtgagcctggagaggccggacccgctggtgcc
atgggtcctcgtggtgcccccggcccacctggaaagaacggagaggatggtgagtctggt
aaacctggtcgtggtggtgagcgcggaccttccggcccacagggagctcgtggtttccca
ggaacccccggtctgcccggcatcaagggacacagaggattcagtggtctggatggtgct
aagggagacactggcccctctggtcctaagggagagactggagcttccggtgagaatgga
actcctggtgctatgggacctcgtggtttgcccggcgagagaggccgcaatggtgctact
ggagcagctggagctcgtggtaacgatggtgctgctggtgctgccggacctcccggaccc
actggtcccgctggacctgccggattccccggtggccctggatccaagggtgatgctgga
cctcagggtgctcgtgggtccgaaggccccgctggatcccgaggcgagcccggtaacccc
ggacctgctggccccgcaggaccctctggaaaccccggaactgatggaagtgctggagct
aagggaacccctggtgctgctggagttgccggagctcccggtttccctggaccacgtgga
cccccaggacctcagggtgctgccggtgcccccggagccaagggtaacactggagacctc
ggttccccaggcgccaagggagaggccggtgccaagggagaggctggtgctccaggtgtt
caaggagcccccggaccatctggtgaggaaggcaagagaggatccagaggagagcctggt
gctgcaggagcccgtggagctcctggagagcgaggtgcccctggtggtcgtggattccct
ggttctgatggccctgctggactcaaaggtgccaatggtgagcgtggtgcacccggtcct
gttggacctaaaggttcaatcggtgagtctggccgcaatggtgagcctggtctgcaagga
gccaagggtatgactggtagccctggcagccctggacctgatggcaagttgggacctgct
ggagcaactggacaagatggccgccccggacctcctggcgccgttggagctagaggccag
cctggagtcatgggattccccggacccaagggagctgctggtgaaggtggaaagcctggc
gagagaggagcaatgggacccactggcgcaactggtgcccccggaaaggacggtgatgct
ggtgctccaggacccgctggacctgctggtccttctggtgagagaggagaacagggacct
ggtggacctcccggattccaaggtctcccaggaccccagggtgccattggtgagagtggc
aagtccggagagcagggtgtgcccggtgaagctggagccccaggacctgttggaaataga
ggtgacagaggattccccggtgagcgtggtgcacctggtgctgttgggcctgctggtgct
cgtggatctgtcggatctcctggaaacgagggtgccaagggagattctggcgcccccggt
gctcccggagcccagggtcctcctggactgcagggaatgcctggtgagcgtggagctgct
ggtcttccaggactgaggggagatagaggtgagcaaggaggcaagggtgttgatggagct
cctggtaaggatggcccccgcggtttgactggacctattggactgcccggacccgctggt
gccaccggagacaagggagagcctggccctgtcggaattcccggacctcctggacctcgc
ggaggatctggtgagcgtggagagtctggaccacctggacctgctggatttgctggtcct
cctggtgctgatggacagcctggtgctaagggagagtccggagataatggtgctaaggga
gatgcaggtccccctggtgcttctggaccaactggtggtcctggacctcagggtcccact
ggtaacagtggccctaagggaacccgcggagccgctggtccacctggtgctactggcttc
cctggtgctgctggcagagtcggacctcctggcccctctggcaacgccggaccacctgga
ccctccggaccatctggcaaagaaggacccaaaggaaaccgtggtgagactggacccgct
ggtcgccctggcgagatgggtgctgctggagcaccaggacctgctggagagaagggttcc
gctggaaacgacggacctgtcggagctcccgggtttccaggaggtaaaggtttggtcggg
ccacgtggtattgtcggtctgcctggacaaagaggcgagagaggtttctctggaatgccc
ggacctgccggagaaagtggaaagcctggaccttctggccccagtggtgagcgcggacct
tccggacccatgggtccaactggacagcctggacccgctggtgagcctggacgtgaggga
agccccggaaatgagggatcagctggtcgcgatggagctgctggacccaagggagatcgc
ggcgagagcggacatgctggagctactggtgcccctgggccctctggtgcacccggacct
gttggacccgctggaaagaacggtgaacgcggagagactggacctagtggccccgctggc
gctgctggccctgctggacctcgtggccctgcaggagctcttggacttcgtggagacaag
ggagaaactggcgaggctggagagagaggcatgaagggacacagaggattcactggcttg
cagggacctcctggcccagccggatcttctggagagcaaggacctgctggttctgctgga
cccgctggacctagagggccatctggatctgctggagctgttggtaaggacggtatgact
ggcatgcctggacccactgggcctcctggacctcgtggacgttctggagagatgggacct
tctggtccaccaggacctcctggacctcccggagcaccaggtgcccccgctggcggattt
gaccttggattcatttcccagcatcaggagaaggcccctgatccgttacgtatgttccgc
gctgatgacgccaatgttctccgtgaccgcgaccttgaggtggatggaaccctgaagagc
ctgagccagcaaatcgagcagatccgcagccccgacggaacccgcaagaaccccgccaga
acctgccgtgacctgaagatgtgcaaccccgactggaagagcggcgagtactggatcgac
cccgaccagggctgcactcttgatgccatcaaagtctactgcaacatggagaccggagag
acctgcgtaaccccaacacagcccgaggttgccaagaagaactggtacatgagcaagaac
atcaaggagaagaagcacgtctggttcggagaggcaatgaacgacggcttccagtttgag
tacggaagcgagggttccaacccacaggacgtcaacatccagctgaccttcctgcgtctc
atgtccactgaagcaacccagaacatcacctaccactgcaagaacagcgtcgcctacatg
gacgcaaccgtcggcaacctcaagaaggccatgctcctccagggctccaacgagatcgag
atcagagccgagggcaacagccgctttacctacagcgtcctggaagacggatgcacgtca
cacaccggtacatggggcaagacagtcatcgactacaagacatcgaaaacatctcgcctg
cccatcattgatatcgctcctatggacgttggtgctccagatcaagagtttggccttgaa
gttggacccgtctgtttcttgtaa
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integrated database retrieval system
