Pungitius pungitius (ninespine stickleback): 119225670
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Entry
119225670 CDS
T07626
Symbol
skic3
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119225670 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119225670 (skic3)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
119225670 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_14
TPR_16
TPR_19
TPR_17
TPR_8
TPR_11
TPR_CcmH_CycH
TPR_12
TPR_9
ANAPC3
Fis1_TPR_C
YceG_bac
TPR_COPA_B
Motif
Other DBs
NCBI-GeneID:
119225670
NCBI-ProteinID:
XP_037339604
LinkDB
All DBs
Position
5:complement(14181219..14193482)
Genome browser
AA seq
1566 aa
AA seq
DB search
MSNKEVKTALKSAREALKNKEYKEALKHCKAVLKLEKNNYNAWVFIGLAASELEQADQAQ
TAYKKAAELEPEQLLAWQGLANLYEKTDQWDFKVELPNIYQKLVELYASSDKNKCYEMIS
KLSDIYQSDKEYLKLAKVWRQLIQVKEEEAVDKKELLQLWQQMTQLLSECLDQQERDNET
QQHLITAFEKAMVLIDPVPGEQHKKASADYVKCLSKLPQEEPKMIEACKSMLSLYPNQSY
PLEVLCSHYFKTGVQNEDAVSCFSRLLDLAPNSGLGHLGLGTKALQEGRFKDAIKDLAQG
LKEMSTSRGWCNLAEAQFKMQKYSDCAISCSQGVTGCVSGDEELRVKLLGMKLEALVRSG
GDTAADQALETFSQIPDSEKDPVLVGLKGRAYLNKGQVDDALKVSLELLASHPNLTQGLI
LKGLGHLAQGQHQLVEESFLKAISQSPNCGEYYFLLGRLYWDMGEETRKDRSKAHTHLLK
AAKLDPNLGCVFRYLGHYYLHVANDLDRSRRCYKKAFEMDNDDAESGAASVDLSMKQDDM
DTALATLQSVIEKATPGSAKWAWMRRGLYYLKIGEHQQAVADLQAALRADPEDWVCWECL
GQAYLNRRSFTAALKAFGKAYQLQPSSIYSVYQAAAIKQTLGKFKEAVAEYLLITAQQDY
VPALKGLGECQLSLAKSLMEDCRDGGAIDLIQQAIKNLFRAVEMRPDLSCLWKLLGDACT
AVRTVSPDVAQLLVPAPLAGLDNQSHTLNQAQTLKVGERCYAHALKLMPEVPSLWNDLGL
NYYHQSSLSCLTEDDQNSPSLLLEKAQQCLKKAIMMDSGNHSFWNALGVISMSKGLENLA
LAQHCLIKSIQVEANNVVAWTNLGTLYLKNDNIELAHKAFKIAQSLEPLYVNCWIGQALI
AERVGSYDTMDLFRHTTELSTHMEGVKGYAYWVCSTLLDKSNRDSELYRYNIVQMNAISA
AQVSLSKYTERIQSDPFAFIMLGYLNEHLHLKRQAIKAYKRAVELLTAMSSTEELAFALG
SYGRALCTAGQSEEAVCVYNSTPLQELSDLAGLALAYSRAGLIPESIDAYERALAVASTE
KERAYILTALALLQHRQGNQDSAKTLLFKCSMLKEPISESLLCLCALGLVHSDATLAAAA
LTELLKLGPGSVKVVEQRCLLTCALLALQGNYSAVQREASRAVHSNPGNPSLWALLSRLV
PQYHPKKANGGAIAGHVACLSSMTQGKRALLYSGVNQLANGRHSGEDSHRNALKTMQRAV
LLCPDDPATWAGLMAACHTENTSCYLSGSAPSRRGLEQTLMSVVSEKVHNVEEIERPLAQ
ALEGWVLKQAVTGLMLGGQLEQAEALCSQVLSVSPEHPEVMLSLRQVQCQRLLLVGTGTV
LPDPVLEQLQNAVMMNPTNLGAWHWLAEVFQSQGLLVQAVMAYRQSLQLASQLGLHSSQV
ASLLRLALLALVNCMTGVPGNEWTDMILEATTEVLKLGSCPMALLFQALLQYVNKMAARD
TRRVLERLAYSQDLPVTVVQVSSWYLLRHLHAKNDQDLMNVLLQHAKMNGDKRLMEFHSL
LASSSS
NT seq
4701 nt
NT seq
+upstream
nt +downstream
nt
atgtctaataaggaagtgaaaacagcacttaaaagtgccagagaggccttaaaaaacaaa
gagtacaaagaggctctgaaacactgcaaggctgttttgaaactggagaagaacaactat
aacgcatgggtgttcatcgggttggcagccagtgagctggagcaagcggatcaggcgcag
accgcctataaaaaagcggcggagcttgagcccgagcagctgctggcctggcagggtttg
gcaaatctttacgagaagaccgatcagtgggattttaaagttgagctacccaacatctac
cagaagcttgttgagctgtatgcaagctctgacaaaaataaatgttacgagatgatcagt
aagctgtcggatatctatcaatctgacaaagaatatttaaagttggcaaaggtttggcgg
cagctcattcaggtgaaggaggaagaggctgtggacaagaaagagttactgcagctgtgg
cagcagatgacccaactcctctcagaatgccttgatcagcaagagcgggacaatgaaact
caacagcatttaatcacagcatttgagaaagccatggttctcatagatcctgtacccgga
gagcaacacaagaaagcctcagctgattatgttaaatgtctttctaaattgccacaagaa
gagcccaaaatgattgaggcatgtaaatccatgctgtccttgtatcccaaccaaagttat
cctcttgaggtcctttgttctcactacttcaaaacaggggttcagaatgaggatgcagtc
agctgtttctcccgcctccttgatctggcaccaaacagtggattaggtcacttgggtctg
ggcaccaaagcactgcaagaagggaggtttaaagatgccataaaggacctggcccaaggt
ttgaaagaaatgagcactagtagaggatggtgcaatctggctgaagcccagtttaaaatg
cagaaatactcggactgtgctatttcatgctcccaaggtgtgacaggatgtgtttccgga
gacgaggagctgagggtcaaactgctagggatgaagctcgaggctttagtcaggagtggg
ggagacactgccgctgaccaggctttagagaccttttcacagatcccagattctgaaaaa
gacccagttctagtcggccttaaaggacgagcatacctcaacaagggacaagtggacgac
gcactcaaggtgtccttagagctgctggcctctcacccgaatctgacccaggggttgata
ctgaaaggactgggccatttggctcagggacagcatcagctggtagaggagagtttcctc
aaggcgatcagtcagagcccaaactgtggagagtattatttcttgctgggacgactttac
tgggacatgggagaagagacccgaaaagacagaagcaaagcccatacacatttgctcaag
gctgcaaagttagacccaaatcttggttgtgtgttccgctacctcgggcattactatctc
catgtggcaaatgatcttgaccgctcacgacgatgctataagaaggcctttgagatggac
aacgacgatgctgagtctggagccgcctcagtggacctcagtatgaagcaggacgacatg
gacactgctctggcaacactgcagtccgtgattgagaaagccactccaggctcagccaaa
tgggcttggatgaggcgggggctgtattacctcaagatcggagagcatcaacaagctgtt
gctgatctgcaggcagctctgagagcagatccagaggactgggtgtgttgggagtgttta
ggtcaggcctacctcaaccgccggagtttcacagccgctctgaaggcctttggtaaggcc
tatcagctccaaccctcctccatctatagtgtctaccaggctgctgctatcaaacagacc
ctgggcaagttcaaagaggcggttgcagagtacttgctgatcacagcgcagcaagactat
gtgcctgccctcaaaggtcttggggagtgccagctgtctctagcaaaaagtttaatggaa
gactgcagagatgggggagccattgaccttattcagcaagccataaaaaacctcttccga
gctgtggagatgcgtccagacctgtcctgtttgtggaagctgctgggagatgcttgcacc
gctgtccgcaccgtgtcgccagacgttgctcagcttttagtgccagccccactggctggc
ttagataaccagagccacacactgaaccaggcccagacactcaaggttggagagaggtgt
tatgcccatgctttgaagctgatgcctgaggttcccagcctttggaatgaccttggactc
aactattaccatcagtccagcttgtcctgcctcacagaggatgaccagaactcgccatcg
ttgctactggagaaggcacagcagtgtttaaaaaaggctatcatgatggacagtgggaac
cacagcttctggaatgccctgggagtgatttcaatgagcaaaggtcttgagaacttggct
ctggctcaacattgcctcattaagtcaatacaagttgaagcaaacaatgttgttgcttgg
accaaccttggtaccctgtatttgaagaacgacaacatcgagcttgcacacaaggccttc
aaaattgcccagtcgctggagccgctctatgtcaactgctggattggacaggcactgata
gcagagagggtgggaagctacgacaccatggatcttttcaggcacaccactgaactcagc
acacatatggagggagtgaaaggttatgcctactgggtgtgttccaccctgctggataag
agcaacagagactctgaactttaccgctacaacatagtccagatgaatgccatttctgct
gctcaggtgtcgctcagcaagtacacagagaggatccagtccgacccctttgctttcatc
atgcttggttacctgaatgagcatctgcacctgaagagacaggccataaaggcttacaaa
agagctgtggaactgctgacggccatgtcctcgaccgaggagctggcctttgctctaggc
agctatggacgtgctttgtgcactgcaggtcagtcagaggaggctgtgtgtgtttataat
tccactccactgcaggagctcagcgatctggccgggctggctctcgcctacagcagggca
ggactcattccagagagcatcgacgcctatgaacgtgccttggctgtggcttccactgag
aaggagagggcttacatcttgacagctctagctctgcttcagcaccggcagggtaaccaa
gactcagccaagactctgctgtttaaatgctcgatgttaaaggagcccatctcagagtct
ctgctgtgtttatgtgccctggggttagtccacagcgatgctacactagctgctgctgcg
ctgaccgagttgctaaagcttggtccagggtctgtgaaggttgttgagcagcgatgcctc
ctcacctgtgccttgctcgccctgcagggcaactacagcgccgtgcaaagagaggcttcc
agagctgtgcacagcaatcctggaaacccatctctatgggccctgctttccaggctggta
ccacaataccaccccaaaaaggctaatggcggtgcgatagctggtcacgttgcctgtctc
tccagtatgacccaaggaaagagggcgctgttgtacagtggggtgaaccagctagctaac
gggagacactctggagaggacagtcacaggaatgcgctgaagacgatgcagagagctgtg
ttgctctgtcctgatgatccagcaacatgggcgggactgatggctgcctgtcacacagaa
aatacttcctgttatctctccggttctgctcccagcagacgaggattggagcaaacactc
atgtcagttgtttctgagaaagtgcataacgtggaggagatcgagcgccctctggcccag
gctctggaaggctgggtactaaaacaggccgtgactggtctcatgctggggggacagctg
gagcaggctgaagccctctgctcacaggtgctgagtgtttctccggaacacccagaagtg
atgctgtcactgagacaggtgcagtgtcagcgcctcctactggtcggtactggtactgta
ctcccagaccctgtgctggagcaactccaaaacgcagtgatgatgaaccccaccaacctt
ggggcgtggcattggctggctgaggtgtttcagagccagggcttgctggttcaggcggtc
atggcttacaggcagagtctgcagctggcctcacagctcggcctgcacagcagccaggtg
gccagcctgcttcgactagcgctgctggccttggtaaactgtatgacgggtgtcccagga
aatgagtggacggacatgatactagaagccacgacagaagtcttgaagctagggtcgtgt
cccatggccctcctcttccaggccctgctccagtatgtgaacaagatggctgctagggac
acaaggcgtgtgttggagaggttggcttactctcaagacctccctgtgacagtggtgcaa
gtgtccagctggtacctcctcagacacctgcatgccaaaaacgaccaggacctaatgaat
gttcttttgcagcatgccaaaatgaatggagataaaaggctgatggagtttcattccctg
cttgcctcctcttcatcatga
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integrated database retrieval system
