Pseudomonas putida HB3267: B479_19195
Help
Entry
B479_19195 CDS
T02389
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppuh
Pseudomonas putida HB3267
Pathway
ppuh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppuh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B479_19195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppuh03019
]
B479_19195
03400 DNA repair and recombination proteins [BR:
ppuh03400
]
B479_19195
Enzymes [BR:
ppuh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B479_19195
Messenger RNA biogenesis [BR:
ppuh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B479_19195
DNA repair and recombination proteins [BR:
ppuh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B479_19195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
Sigma70_r4_2
HTH_40
GerE
HTH_23
HTH_29
HTH_28
ResIII
Glyco_hydro_57
Motif
Other DBs
NCBI-ProteinID:
AGA74731
LinkDB
All DBs
Position
complement(4230368..4232515)
Genome browser
AA seq
715 aa
AA seq
DB search
MLEQAQRVLKDVFGYDSFRGRQAAIIDCVANGGDALVLMPTGGGKSLCFQVPGLLRPGLT
VVVSPLIALMDDQVATLDELGVPAAALNSTLTPEQQRDLAGRLRRGEVKMLYLAPERLVQ
PRMLDFLRDLDISLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATADMRT
REEIVQRLHLQGAERFLSSFDRPNIFYRIVPKEAPRKQLMAFLGERRGNAGIVYCLSRKK
VDETAAFLCDQGFPALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRAGRDGLPSDAWMAYGLQDMVMLKQMLQNSEGDERHKRIEQHK
LDAMLALCEETRCRRQSLLAYFDETLEQPCGHCDNCVDQVQTWDATEPARQALSAVFRTG
QRYGVGHLVDVLLGKDTEKVRNFGHEKLSVFGVGKGLAEVEWRSLFRQLVARGLVDIDLE
GYGGLRLSDSCRPLLRGEVTLQLRRDLKPQTTARTSSSSGGSPASQLVRAEERELWEALR
TLRRKLAEEHSVPPYVIFPDSTLLEMLRSQPVSLSDMAQVSGVGARKLERYGQAFLEVLN
NSGGTEEAPKVVLDLRHELVSLARAGMTPAQIAGQLNCSEKNVYSLLAEALGRQELSLEQ
ALDLPEDLLMEVQDAFLDGEGELPPVSAIVPLFGGRVPEGVLYCVRAALAAEFEL
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcagcgcgttctcaaggacgtctttggctacgacagtttccgcggg
cgccaggcagcgatcatcgactgcgtggctaatggcggcgatgccctggtgctgatgccc
accggcggcggcaagtcgttgtgtttccaggtgccggggctgctgcgtccgggcctgaca
gtggtggtctcgccactgatcgcgctgatggacgaccaggtcgccacgctcgacgaactg
ggtgtgccggctgccgcgctgaactccacgctgacccccgagcagcagcgtgacctggcc
gggcgcctgcgccgtggcgaagtgaagatgctgtacctggcaccggaacgcctggtgcag
ccgcgcatgctcgacttcctgcgtgatctggatatctcgctgttcgccatcgacgaggcc
cactgcgtgtcgcaatggggccacgatttccgccccgaatacctgcaactgggccagttg
gccgagctgttcccgcatgtgccgcgcatagcgctgaccgccaccgccgacatgcgcacc
cgtgaagagatcgtccagcgcctgcacctgcaaggcgccgaacgcttcctgtcgagtttc
gaccggcccaacatcttctaccgcatcgtgcccaaggaggcgccgcgcaagcagctgatg
gccttcctcggcgaacgccgcggcaacgccggtatcgtttattgcctgtcacgcaagaag
gtcgacgaaaccgctgccttcctctgtgaccagggcttcccggcgctgccgtatcatgcc
ggcctggcagccgagacgcgcgcggccaaccagcaccgtttcctcaacgaggaaggcctg
atcatggtcgccaccattgccttcggcatgggcatcgacaagccgaacgtgcgttttgtt
gcccaccttgacctgcccaagtcgctcgaggcgtactaccaggagaccggccgtgccggc
cgtgacgggctgccgtccgatgcctggatggcctacgggctgcaggacatggtcatgctc
aagcagatgctgcagaactccgaaggggacgagcgccacaagcgcatcgagcagcacaag
ctcgatgccatgctggccctgtgcgaagaaacccgctgccgccgccagtcactgctggcc
tatttcgacgaaaccctcgagcaaccgtgcgggcactgtgacaactgtgtcgaccaggtg
cagacctgggatgccaccgagcctgcccgccaggcgctgtcggcggtgttccgcaccggc
cagcgctacggcgtcgggcacctggtcgacgtgctgctgggcaaggacaccgaaaaggtg
cgcaatttcggccacgaaaaactctcggtttttggcgtcggcaaggggctggccgaggtc
gagtggcgttcgctgttccgtcagctggtggcgcgcggcctggtcgacatcgacctggaa
ggctacggtggcctgcgcctgtccgacagctgccggccgctgctgcggggcgaggtgacc
ttgcagctgcgccgtgacctcaagccgcagaccaccgccaggacgtcgtcgtccagtggc
ggcagcccggccagccagctggtgcgtgccgaagagcgcgagctgtgggaagcactgcgt
accctgcggcgcaagctggccgaggagcacagcgtgccgccctatgtcatcttccccgac
tcgacgctgctggagatgctgcgcagccagccggtcagcctcagcgacatggcccaggtc
agcggcgtgggtgcgcgcaagctggagcgttatggccaggccttcctcgaggtgctgaac
aatagcggtggcaccgaagaagcaccgaaagtggtgctcgacctgcgccacgaactggtc
agcctggcacgcgccggcatgaccccggcgcagatcgccggccagctcaactgcagcgag
aagaacgtctacagcctgctggccgaggcgctgggccgccaggaactgagcctcgagcag
gccctggacctgccggaagacctgttgatggaagtgcaggatgccttcctcgatggcgag
ggcgagctgccaccggtgtctgcgatcgtgccgctgttcggggggcgggtgccggagggc
gtgctgtactgcgtgcgggctgcgctggcggccgagttcgagctgtaa
DBGET
integrated database retrieval system
