Pogoniulus pusillus (red-fronted tinkerbird): 135183513
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Entry
135183513 CDS
T10504
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135183513 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppus03041
]
135183513 (SF3B1)
03036 Chromosome and associated proteins [BR:
ppus03036
]
135183513 (SF3B1)
Spliceosome [BR:
ppus03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
135183513 (SF3B1)
Complex B
135183513 (SF3B1)
Complex C
U2 SnRNP specific factors
135183513 (SF3B1)
Chromosome and associated proteins [BR:
ppus03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
135183513 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
TPR_DNAAF5
HEAT_EF3_N
HEAT_MROH2B_C
HEAT_ECM29
TPR_IPO5
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
VPS15-like_hel
Adaptin_N
Phage_T7_Gp15
UNC45-central
Motif
Other DBs
NCBI-GeneID:
135183513
NCBI-ProteinID:
XP_064014655
LinkDB
All DBs
Position
2:26882502..26905810
Genome browser
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccatgaagatattgaagcacagattcgagaaattcaaggg
aagaagcctgctcttgatgaagcacaaggagtaggccttgattccacaggatattatgat
caagagatatacggtggcagtgacagcaggtttgctggatatgtcacttctattgcagca
actgaattggaagatgatgatgatgactacccttctacgagcttgctcggccagaagaag
ccagggtaccatgctccagtggcattgcttaacgacatcccacagtctactgaacagtat
gatccttttgcagaacaccgtcctcaaaagattgcagatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcccctgaacgtctcgatccttttgcagatggagggaag
acaccggatcctaaaatgaatgccagaacgtacatggatgttatgcgtgaacagcattta
acaaaggaagagagggaaattaggcaacaactagctgaaaaagctaaagctggagagctt
aaagtcgtcaatggagcagcatctcagccaccttcaaaacgcaaacggcgttgggatcag
acagctgatcagactcctggtgctacacctaaaaagctatccagttgggatcaagcagag
actcctggccatacaccatctctccgatgggatgaaactccaggccgtgcaaagggcagt
gaaactcctggtgctaccccaggctcaaaaatctgggatccgactcccagtcatacacca
gcaggagctgccacacctggtcgggacacacctggacatgcaacaccaggccatggaggt
gccacttccagtgcacgtaaaaatagatgggatgaaacacctaaaacagaaagagatact
ccgggccatggcagtggatgggctgagacacctcgtacagatagaggtggtgactccatc
ggtgagacgccaactccaggagcaagtaaaaggaagtcccgttgggatgaaacgcctgct
agccagatgggtggcagcactcctgttctgacacctggcaaaacacccattggtacacca
gctatgaacatggcaactcctacacctggtcatatcatgagcatgactcctgaacagcta
caggcttggcgttgggaaagggaaatagatgagagaaacagaccactttctgatgaagaa
ttggatgctatgtttccagaaggatataaggttcttcccccaccagctggttacgtacct
attcgcactccagctcgcaagcttacagcgactccaacgcctttgggtggtatgactgga
ttccacatgcagacagaggaccggactatgaaaagtgttaatgatcagccgtctggcaat
ctccccttcctaaaaccagatgacatccagtacttcgataaactcttggttgatgtcgat
gaatcaactctgagtcctgaagaacagaaggagagaaaaataatgaaattacttctgaaa
ataaagaatggcacacctcccatgaggaaggctgccttgcgacagatcactgataaagct
cgggaattcggagcagggccattgtttaatcaaatcctgcctctgctgatgtcaccaaca
cttgaagatcaggagcgtcacttgctcgtcaaagtcattgacagaattctctacaagctg
gatgacctggtccggccatatgtgcacaagatccttgttgtcattgaaccactgctgatt
gatgaagactactatgctagagtggaaggcagagaaattatttcaaacttggctaaggct
gctggtttggccacaatgatctccaccatgcgacctgatattgataacatggatgaatat
gtccgaaatacaacagctcgagcctttgctgtcgttgcctctgctttgggcattccttct
ctgctgcccttcttgaaagctgtctgtaaaagcaagaaatcctggcaggctcggcatact
ggcatcaagatcgtacagcagattgcaattcttatgggttgtgccatcttgcctcatctc
aggagcttggttgaaattattgagcatggtctggtggatgaacagcagaaagttcgcact
atcagtgctttggctattgctgctttggctgaggcagctactccttatgggattgagtca
tttgactctgttctgaagcctttgtggaagggtatccgtcaacacagaggaaagggcttg
gctgcctttttgaaggctattggttacctaattccactcatggatgctgagtatgcgaac
tactacaccagagaagtcatgctgatccttatccgagagttccagtctcctgatgaagag
atgaaaaaaattgtgttgaaggtggtaaagcagtgctgtggtacagatggtgttgaagca
aactacattaaaacagaaatcttgccacctttcttcaaacacttctggcaacacagaatg
gcactggacagaagaaattacagacagttggttgatacaactgtggagttggcaaataaa
gttggagcggcagaaataatttccagaattgtggatgatctgaaagatgaggctgagcag
tacagaaaaatggtcatggagacaattgagaagataatgggaaatctgggggcagcagac
atcgatcataaactggaagaacaactcattgatggtatcttgtatgccttccaggagcag
accacagaggattcagtgatgctgaatggctttggcacagtggttaatgctctgggcaaa
agagtgaagccctacttgccacagatctgtggtacagtgctgtggcggctgaacaacaaa
tcagccaaagttaggcagcaggctgctgacctgatctctcgaactgcagtcgtcatgaag
acttgtcaagaggaaaaactgatgggacacttgggtgttgttctgtatgaatacttggga
gaagagtaccctgaagtactgggcagcatactgggagctctgaaggctattgtgaatgtt
ataggtatgcacaagatgacaccacctatcaaagatcttctaccacgccttacacctatt
ctgaagaacaggcatgagaaagtgcaggaaaactgtattgatcttgtggggcgcattgca
gacagaggtgcagaatatgtatctgccagggaatggatgaggatctgctttgaactgctt
gaattactgaaagcccacaagaaagctatccgaagagccacagtgaacacttttgggtac
attgcaaaagctattggacctcacgatgtactggctacgctgctcaacaatctgaaagta
caggaaaggcagaacagagtctgtactacagtagccattgctattgtagctgaaacttgc
tcacctttcacagtgctacctgcactcatgaacgagtacagagtgccagaactgaatgtc
cagaatggtgtgttaaaatccctgtctttcctcttcgagtacattggagagatgggcaaa
gattacatttatgccgttacaccgttgcttgaagatgctttaatggacagggaccttgtg
cacaggcaaacagccagtgctgtggtgcagcatatgtctctgggagtttatggatttggc
tgtgaagattctcttaaccatctgctaaattatgtgtggcctaatgtgtttgaaacctct
cctcacgtcattcaggcagtcatgggggctttggagggcctcagggttgctattggtccc
tgcaggatgttgcagtattgtttacagggtttgtttcaccctgccaggaaggtaagagat
gtttattggaagatctataattccatctacattggctctcaggacgctctgatagcacac
tacccacggatctataacgatgagaagaacacctacattcgttacgaactcgattacatc
ttataa
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