Pogoniulus pusillus (red-fronted tinkerbird): 135184624
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Entry
135184624 CDS
T10504
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ppus Pogoniulus pusillus (red-fronted tinkerbird)
Pathway
ppus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135184624 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppus03019
]
135184624 (CNOT1)
Messenger RNA biogenesis [BR:
ppus03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135184624 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
135184624 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
135184624
NCBI-ProteinID:
XP_064016664
LinkDB
All DBs
Position
20:complement(22103371..22215071)
Genome browser
AA seq
2377 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCASVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLSDGIALQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQQAWATDDVAQIYDKCMTEL
EQHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADAD
LLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNM
QQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSR
GNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQH
NPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHD
VRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWL
ELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVL
LVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEIN
IAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALV
LYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNS
HTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWN
HEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7134 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaacaggcacggt
cccgaggcagacaggcatctactacgctgcctattctcccacgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcagtttctgatccaggagtgtgcgtcg
ctgatcacaaaacccaactttatctcgacgctgtcctacgccattgacaatccattgcac
taccagaagagtctaaagccttcaccccatttgtttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtcttgctctactgaactctttcagctcagat
cttcgaggttttgctgcccagttcatcaagcagaagctgccggatctgctgcgctcctac
attgacgcagacgtcagtggaaatcaggaaggtggcttccaagacattgcaatagaagtc
ctgcacctcctcctctcccatctcctttttgggcagaagggagcctttggggtgggacag
gagcaaattgacgctttcctcaagacattacgtagagattttccccaggaacgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagacttcatgcaa
gaagttggctatggcttttgtgcaagcgtggaggagtgccgcaacatcatcatgcagttc
ggcgtgcgggaggtgacagcggcgcaggtcgccagggtgctgggcatgatggcacggaca
cactcggggctgagcgatggcattgccctgcagtcgatttcggctcccggcagcgggatt
tggagtgatgggaaagataaaagtgatggagcacaagcccatacctggaatgtggaggtc
ttaattgatgtgcttaaagagctgaatcctagcctggacttcaaagtagtgacctatgag
ttggaccacccagggtttcagatccgtgacagcaagggcctgcacattgtggtctttggc
atccagaggggcctgggcatggaagttttccctgttaatgccatatacagaccttggaag
cacgcagagggccagctctccttcatccaacattccctcataaaccctgacatcttttgt
tttgctgactatccttgtcatactgttgccacagacatcctgaaagcaccgccagaggat
gacaatcgggaaatcgccacctggaagagcctggatttgattgagtctctgttacgcctg
gcagaagtggggcagtatgagcaggtgaagcagctcttcagtttccccatcaagcattgc
ccagatatgttggtgttggccttactgcagatcaacacctcctggcacaccttgcgccac
gaactcatctccacgctcatgccaatcttccttggcaaccatcccaactctgccatcatt
ttgcactacgcctggcatggacagggtcagtctccttccattcgtcagctcatcatgcat
gccatggcagagtggtacatgagaggggagcagtacgaccaggccaagctctcgcgtatc
ctggatgtggcacaagacttgaaggccttgtcaatgctgctaaatggtactccctttgcc
ttcgtcatcgacctcgctgcgctcgcctcgcgccgggagtacctcaaactggacaagtgg
ctcacggacaagatccgggagcatggggagcccttcatacaggcctgcatgactttctta
aagagaagatgtccttctatcctgggtggccttgctccagaaaaggatcagcccaaaagt
gctcagcttcctccagaaaccttggccactatgctggcatgtctgcaggcttgtgctggg
agtgtttctcaggagctgtcagagaccatcctcaccatggtggctaactgcagcaatgtg
atgaacaaggccaggcagcctccgcccggagtcatgcccaaaggacgcccgcccagcgcc
agcagcttggatgccatctcccctgtgcagatcgactccctcgcaggaatggcatctctt
agcttaggtggctcagctgctcctcacacccagagcatgcagggcttccccccaaacttg
ggctctgccttcagtactcctcagtcaccagcaaaagccttcccccctctttccacccaa
aaccagacaacgggtttcagcggcattggaggactctcttcacagctcccagtaggtggt
ctcactacgggcagcctgactggcataggaactggagccctgggccttcctgccgtgaac
aacgaccccttcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaaccagcacttt
agcaaagaaattgacgacgaggccaacagctacttccagcggatctacaaccacccgccc
caccccaccatgtctgtcgacgaggtgttggaaatgctgcagaggttcaaagactccaac
atcaaacgggagcgagaagtcttcaactgcatgctgaggaacctgttcgaggagtaccgc
ttcttcccccagtaccctgacaaggagctgcacatcacagcctgcctctttgggggcatc
atagagaaaggactggtgacctacatggccctgggcctggccctgcgctatgtcctcgaa
gccttacgcaagccttttgcctccaaaatgtactactttggcatcgctgcactagatagg
tttaaaaatagactgaaggactatccccagtattgtcagcacttggcctccattagtcac
tttatccagttcccacatcacttacaggagtacatagaatacggacagcaatccagagat
cctcctgtgaagatgcagggatccatcaccaccccgggaagcattgcacttgcccaggct
caggcccaggcccaagttccagcaaaagctcctcttgctggccaagtcagcactatagta
accacctcaaccaccaccactgtggcaaaaaccattaccatcaccaggccaactggagtc
agcttcaagaaggatgtgccgccttccatcaacaccaccaacattgatacgctgctggta
gcaacagatcagactgagaggattgtggaacctccagagaacgtccaagagaagattgct
ttcatcttcaataatctctctcagtccaatatgacacagaaggttgaagagctgaaggag
acagtgaaagaagagttcatgccttgggtatcccagtaccttgtgatgaagagagtcagc
attgagcccaactttcacagcttgtattccaacttcctggacactctgaagaatcctgag
ttcaacaaaatggttctgaatgaaacctacagaaatatcaaggtgctgctgacatcagat
aaggctgcagccaacttctcagaccgatccttgctgaagaacctcgggcactggctgggc
atgattacactggctaagaacaaacccatcctgcacacggatttggatgtgaaatctctg
ctgctggaagcctacgtgaagggccagcaggagctgctttatgtggtgccatttgttgcc
aaagtcttagaatccagcgtcaggagcgtggtcttcagacctccaaacccatggacaatg
gcaattatgaatgttttagctgagctacaccaagagcatgatctaaaattgaatctgaag
tttgagattgaggtactctgcaagaaccttgcactggacatcaatgagctgaaacctggc
aacctgctgaaggataaagaccgcctgaaaaacctggatgagcaactctctgctccaaag
aaggatgtgaagcagccagaggagctgccacccatcacaaccaccactgcttctacgacc
ccagccaccagcaccacctgcacagccacagttcctccccagccacagtacagctaccac
gacatcaatgtctactccttagggggtctggctccacacatcaccttgaacccaacgatc
ccgctgttccaggcgcacccgcagctgaagcagtgcgtgcggcaggccatcgagcgggcg
gtgcaggagctggtgcacccggtggtggatcgctccatcaagatcgccatgaccacctgc
gagcagatcgtcaggaaggatttcgccctggactcggaggagtcccgcatgagggtggcc
gcgcaccacatgatgcgcaacctgaccgccggcatggccatgatcacctgcagggagcct
ctgctcatgagcatcgccaccaacttgaagaacagcttcgccaccgccctcagggcagcc
tccccacagcagagggacatgatggagcaggcagctgcccagctggcacaggacaactgt
gagctggcctgctgcttcatccagaagacagcggtggagaaggcaggccccgagatggac
aagaggcttgccactgagtttgagctcaggaagcatgccaggcaggaggggcggcgctac
tgcgatccggtggtgttaacctaccaggctgagcggatgccggagcagatccggctaaag
gttggaggagtggaccccaagcagctggctgtttatgaagagtttgcacgcaacgtccct
ggcttcctgcctaccaatgacctaactcagcctacaggcttcttggctcagcctatgaag
cagcaagcttgggctacagatgatgtggcccagatctatgacaagtgtatgacagaactg
gagcagcacctgcagtccattccacacaccctggccatgaatcctcaagctcaagccttg
cgcagcctcttggaggccgtggtggtggcgcggaactcccgcgatgctattgctgctctt
gggctgctgcagaaggctgtagagggcttgctggatgccaccagcggggcagacgccgac
ctgctgctccgctatcgcgagtgtcatctgctggtgctgaaggctctgcaggatggccgt
gcctatggatctccctggtgtaacaagcagatcactaggtgcctgatcgagtgcagagat
gagtacaagtacaacgtggaggctgtggagctgctcatccgcaaccatctcgttaacatg
cagcagtatgacctgcacttggctcagtcgatggagaatggcctgaactacatggctgtg
gccttcgccatgcagctggtcaagatcctgctggtggatgagcgcagcgtcgcccacgtg
acggaggcagacctcttccacaccatcgagacactcatgaggatcaatgctcattccaga
ggaaatgcccctgaagggttgccccagctgatggaagtggtcagatcaaactatgaagca
atgattgaccgtgctcatggaggccctaacttcatgatgcactcaggaatttcccaagcc
tctgagtatgatgatccacctggtctgagggagaaggcagagtacctgctgagggagtgg
gtgaacctctaccattcagctgcagccggccgggacagtaccaaagccttctccgccttc
gttggccagatgcaccagcaggggatcctgaagacagacgacctgatcactcgcttcttc
cgcctctgcaccgagatgtgcgtggagatcagctaccgcgcccaggccgagcagcagcac
aaccccgcggccaaccccaccatgatccgtgccaagtgctaccacaacctggacgccttc
gtcaggctcatcgccctgctggtcaagcactccggggaggcaaccaacacagtcaccaag
atcaacctcctcaacaaggttcttggcatcgtggtgggagtcctgctgcaggaccacgac
gtgcggcagagcgagttccagcagctcccttaccatcgcattttcatcatgctgctcttg
gaattaaatgctcctgaacatgtgctggaaaccatcaacttccagaccctcacagctttc
tgtaacacatttcacatcctgaggcctaccaaagctccaggttttgtttatgcctggctg
gaactcatctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaag
ggttggccaatgtatgcccagctgctgattgacctcttcaagtacctggctcctttcctt
cgaaacgtggaactcaccaaacctatgcaaatcctctacaagggcaccctgcgtgtgttg
ctggtcttgctgcatgacttcccagaattcctttgtgactaccactatgggttctgtgat
gtgatcccacccaactgcattcagctaaggaatctcatcctgagtgccttcccgcggaac
atgaggcttccagaccccttcacccccaacctgaaggtggacatgctgagtgagattaac
attgctccacggatcctcaccaacttcactggggtgatgccacctcagttcaagaaggac
ttggattcctatctcaagacacgttctccagtcacctttctgtctgacctgcgcagcaac
ctgcaagtctccaacgagcctggcaaccgctacaacattcagctgatcaatgccctggtg
ctctacgtgggcactcaggccattgctcacatccacaacaagggcagcacaccctccatg
agcaccatcacccactcagcacacatggacatcttccagaacttggcagtggatctggac
accgaaggcaggtacctgttcctgaacgccatcgccaaccagctgcgctaccccaacagc
cacacgcactacttcagctgcaccatgctctacctgttcgcagaggccaacaccgaggcc
atccaggagcagatcaccagggttctcctggaacgactgattgtaaataggcctcatccc
tggggtctcctcatcaccttcattgagctgatcaaaaacccagcttttaagttctggaac
cacgagttcgttcactgcgcgccggagattgagaagttgttccagtcggttgcacagtgc
tgcatggggcagaagcaggcccagcaggtcatggaggggactggtgccagttag
DBGET
integrated database retrieval system
