Pseudomonas sp. UW4: PputUW4_04891
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Entry
PputUW4_04891 CDS
T02357
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ppuu
Pseudomonas sp. UW4
Pathway
ppuu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppuu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PputUW4_04891 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppuu03021
]
PputUW4_04891 (rpoB)
03400 DNA repair and recombination proteins [BR:
ppuu03400
]
PputUW4_04891 (rpoB)
Enzymes [BR:
ppuu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PputUW4_04891 (rpoB)
Transcription machinery [BR:
ppuu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PputUW4_04891 (rpoB)
DNA repair and recombination proteins [BR:
ppuu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PputUW4_04891 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AFY22081
LinkDB
All DBs
Position
complement(5580362..5584435)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHVKGET
LSLELVPQRLRGEIAVLDIQDDKGKVIVEQGRRITARHINQLEKAGIKELDVPLDYVLGR
TTAKVIVHPATGEILAECNTELNTEILAKIAKAGVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKSQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMIEEQRKVAELRKFLHEIYNEIGGRQESLDDFSDQEILDLAQNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLTDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtacctcctggccatccagctggattcgtatcgtgaattcttgcaa
gcgggagcgactaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggatatcgtctgggc
gaaccggcatttgatgtcaaagaatgcgtattgcgcggtgtaacttacgccgtacctttg
cgggtaaaagtgcgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgaaaacggtaccttc
gtaatcaacggtaccgagcgtgtaatcgtttcccagctgcaccgttccccgggcgtgttc
ttcgaccacgaccgtggcaagacgcacagttccggtaaactgctgtactccgcgcgcatc
attccttaccgcggttcgtggctggacttcgagttcgacccgaaagactgcgtattcgtg
cgtatcgaccgtcgtcgcaagctgcctgcatcggttctgctgcgcgcgctcggctatacc
accgaagaagtgctggacgccttctacaccaccaacgtattccacgtgaagggcgagacc
ctgagcctggagctggtgcctcagcgtctgcgcggtgaaatcgctgtcctcgatattcag
gatgacaaaggcaaggttattgtcgagcagggtcgtcgtatcaccgctcgccacatcaac
cagctggaaaaagccggtatcaaagagctggatgtgcctctggactacgtcctgggtcgc
acaaccgccaaggtcatcgtgcatccggcaaccggcgaaatcctggcagagtgcaacacc
gagctgaacaccgagatcctggcaaaaatcgccaaggccggcgttgttcgcatcgaaact
ctgtacaccaacgatatcgactgcggtccgttcgtctccgacaccttgaagatcgactcc
accagcaaccaactggaagcgctggtcgagatctatcgcatgatgcgtcctggcgagccg
ccaaccaaagacgctgccgagaccctgttcaacaacctgttcttcagccctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgcaccgagatcgaa
ggttcgggcgtgctgtgcaaggaagacatcgtcgcggtactgaagaccctggtcgacatc
cgtaacggtaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgc
gtaggcgaaatggccgagaaccagttccgcgttggcctggtacgtgttgagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggcttgatgccgcaagacctgatcaacgcc
aagccagtggctgcggcggtgaaagagttcttcggttccagccagctgtcccagttcatg
gaccagaacaacccgctgtccgagatcacccacaagcgtcgtgtttctgcactcggccct
ggcggtctgactcgtgagcgtgccggctttgaagttcgtgacgtacacccgactcactac
ggtcgtgtatgcccgattgaaacgccggaaggtccgaacatcggcctgatcaactccctg
gccgcttatgcgcgcaccaaccagtacggcttcctcgagagcccgtaccgcgtggtgaaa
gacgctctggtcaccgacgagatcgtgttcctgtccgccatcgaagaagctgatcacgtg
atcgctcaggcttcggccacgatgaacgacaagaaagtcctgatcgacgagctggtagct
gttcgtcacttgaacgaattcaccgtcaaggcgccggaagacgtcaccctgatggacgta
tcgccgaagcaggtagtttcggttgctgcgtcgctgattccgttcctcgagcacgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaagctgtaccgaccctgcgcgct
gacaagccgctggtaggtaccggcatggagcgtaacgtagcccgtgactccggcgtttgc
gtcgtggctcgtcgtggcggcgttatcgactccgtcgacgccagccgtatcgtggttcgt
gttgccgatgacgaagttgaaaccggtgaagccggtgtcgacatctacaacctgaccaag
tacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtacgtaagggtgat
cgggttcagcgtagcgacatcatggccgacggtccgtccaccgacatgggtgaactggct
ctgggtcagaacatgcgcatcgcgttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgttgttcaggaagaccgtttcaccacgatccacatccaggaa
ctgacctgtgtggctcgtgacaccaagcttggcccagaggaaatcactgccgacatcccg
aacgtgggtgaagcggcactgaacaagctggacgaagccggtatcgtttacgtaggtgct
gaagttggcgcaggcgacatcctggtcggtaaggtcactccgaaaggcgagacccagctg
actccggaagaaaaactgctgcgtgcgatcttcggtgaaaaagccagcgacgttaaagac
acctccctgcgtgtacctaccggtaccaaaggtactgtcatcgacgtacaggtcttcacc
cgcgacggcgttgagcgtgatgctcgtgccctgtcgatcgagaagtcccagctggacgag
atccgcaaggacctgaacgaagagttccgtatcgttgaaggtgctactttcgaacgtctg
cgttccgctctggtcggccacaaagccgaaggcggcgccggtctgaagaaaggccaggac
atcaccgacgaagttctcgacggtcttgagcacggccagtggttcaaactgcgcatggct
gaagacgctctgaacgagcagctcgagaaggctcaggcctatatcgttgatcgtcgccgt
ctgctggacgacaagttcgaagacaagaagcgcaagctgcagcaaggcgatgacctggct
ccgggcgtgctgaaaatcgtcaaggtctacctggcaatccgtcgtcgcatccagccgggc
gacaagatggccggtcgtcacggtaacaagggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgacgtcgtcctcaacccgttgggcgta
ccttcgcgtatgaacgttggtcagatccttgaaacccacctgggcctcgcggccaaaggt
ctgggcgagaagatcaaccgcatgatcgaagagcagcgcaaggttgcggagctgcgcaag
ttcctgcacgagatctataacgagatcggcggtcgtcaggaaagcctcgatgacttctcg
gaccaggaaatcctggacctggctcaaaacctgcgtggcggcgttccaatggccactcca
gtgttcgacggcgccaaggaaagcgaaatcaaggccatgctcaaactggcggacctgcca
gaaagcggccagatgcagctgaccgacggccgtaccggcaacaagttcgagcgcccggtc
accgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgcg
cgttctaccggttcgtacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgccgcttac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggccgtaccaagatgtac
aaaaacatcgtggatggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaggaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
DBGET
integrated database retrieval system
