Pseudomonas putida W619: PputW619_1665
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Entry
PputW619_1665 CDS
T00675
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppw
Pseudomonas putida W619
Pathway
ppw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PputW619_1665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppw03400
]
PputW619_1665
Enzymes [BR:
ppw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PputW619_1665
DNA repair and recombination proteins [BR:
ppw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PputW619_1665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ACA72170
UniProt:
B1J603
LinkDB
All DBs
Position
complement(1850045..1853494)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSVLRLPQMSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRF
FAPGLPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPT
RFLLGSSLVLDVGQTIDVEQMRSRLEATGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPETQRSIDKVDSIRLLPAREFPMQKEEVTRFKARFRERFDVDFR
RSAIFQDLASGIIPAGIEYYLPLFFEETSTLFDYLPSDTQVFSLPGVEQAAEHFWNDVRG
RYEDRRGDLSRPLLPPSELFLPVEDCFAQLKQWPRVVVSAEDVEPGVGRERFPARTLPNL
AIEAKANQPLAALSDFLDQFSGRVLFTAESAGRREVLLELLERLKLRPHTVEGWADFITG
SQRLAITIAPLDEGLLLEDPAIALVAESPLFGQRVMQRRRRDKRGEAANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPAADYATFSAGFP
FEETPDQQNAIEAVRADMLAAKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVASAAADLAEGKIDILIGTHKLLQDDV
RFKDLGLVVIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIAT
PPARRLSVRTFVMEQNNSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIVIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPARQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTQLKLQAEKLGIKKV
DAGPNGGKLEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEAL
FERLTPQTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagttctgcgcctaccgcaaatgtcggccacggccggcaaacaaacctggggcaac
ctgcccggtgccgccctcagccttgccatcgccgaggccgccagcagtgctggccgcttc
accctgctgctgaccgccgacagccaggctgccgaccgtctggagcaggagctgcgcttc
tttgcacccggcctaccggtgctgccgttcccggactgggaaaccctgccctacgacctg
ttctcaccacaccaggacatcatttcccagcgcatcgccagcctctaccggctgccagag
ttgagccatggcatcctcgtggtgccgatcaccacggccttacaccgtctggccccaacg
cgcttcctgctcggcagcagcctggtgctggatgtcggccagacgatcgacgtagaacag
atgcgctcacggctggaggccactggctaccgctgcgtcgacacggtctacgagcatggc
gagttcgccgtgcgcggcgcgctgatcgacctgttcccgatgggcagcaagctgccctac
cgtatcgacctgttcgacgacgagatcgagaccctgcgtaccttcgacccggagacccag
cgctcgatcgacaaggtcgactcgatccgtctgctgccggcacgcgaattccccatgcag
aaagaggaagtgacgcgcttcaaggcacgcttccgagaacgtttcgatgtcgacttccgc
cgcagcgcgatcttccaggacctggccagcggcatcatccccgccgggatcgagtactac
ctgccgctgttcttcgaagaaacctcgacactgttcgactacctgccaagcgacacccag
gtgttctcgctgccgggcgtcgagcaggctgccgagcacttctggaacgacgtgcgcggg
cgttacgaagaccgccgcggcgacctgagccgtccactgctgccgccttctgaactgttc
ctgccagtggaggactgcttcgcccagcttaaacagtggccgcgcgtggtggtcagtgcc
gaggatgtcgagcctggcgtcggccgcgagcgctttcccgcccgcaccctgcccaacctg
gccatcgaagccaaggccaaccagccgctggcggcgctgtccgacttcctcgaccagttc
agcggccgggtgctgttcaccgccgaatcggcgggccgtcgcgaggtgctgctggagctg
ctcgagcgcctcaagctgaggccacacacagtcgagggctgggcggacttcatcactggc
agccagcgcctggcgatcaccatcgccccgctggacgaaggcctgctactcgaagacccg
gccatcgccctggtcgccgaaagcccgctgttcgggcagcgcgtgatgcagcgccggcgc
cgcgacaagcgcggcgaggccgccaatgatgcggtgatcaaaaaccttaccgaactgcgt
gaaggcgcgccggtggtgcacatcgaccatggcgtgggccgctatctgggcctggccacg
ctggagatcgacggccaggccgccgagttcctgaccctggaatacgccgagggcgccaag
ctttacgtcccggtggccaacctgcacctgattgcccgctacaccggcagcgatgacgcc
ctggcgccgctgcaccggctcggctcggaagcctggcagaaggccaagcgcaaagccgcc
gaacaggtccgcgacgtggccgccgagctgctcgacatctacgcccgccgagccgcgcgc
aagggttacgcattcgccgacccggctgccgactatgccaccttcagcgccggcttcccc
ttcgaggaaacccccgaccagcagaacgccatcgaagcggtgcgcgccgacatgctcgcc
gccaagccgatggaccgcctggtgtgcggcgacgtcggcttcggcaagaccgaggtcgcc
atgcgcgcggctttcatcgccgtgcacagcggccgccaggtagcggtgctggtgcctacc
accctgcttgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggta
acggtcgaggtgatgagccgcttcaaatcggccaaggaagtggccagcgccgcagcggac
ctggccgaaggcaagatcgacatcctgatcggcacgcacaaactgctgcaggacgatgtg
cgcttcaaggacctgggcctggtggtaatcgacgaagagcaccgctttggcgtacgccag
aaggaacagctcaaggccctgcgcagcgaggtggacatcctcaccctgaccgccacaccg
attccgcgaacgctgaacatggccgtggccggcatgcgtgacctgtccatcatcgccaca
ccgccggcacggcgcctgtcggtgcgcaccttcgtcatggagcagaacaacagtacggta
aaagaagcactactgcgtgaactgctacgcggcggccaggtgtactacctgcacaacgat
gtgaaaaccatcgaaaaatgcgccgcagaccttgccgaactggtgcctgaagcgcgtatc
ggcatcggccacgggcagatgcgcgagcgcgaactggaacaggtgatgagcgacttctat
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccc
agcgccaacaccatcgtcatcgagcgcgcggacaagttcggcctggcccaattgcaccag
ttgcgtggccgggtcggccgcagccaccaccaggcctatgcctacctgctgacaccggcg
cggcagaaagtgagcgccgacgccgagaaacgcctggaagccattgccaacacccaggac
ctgggcgccggcttcgtgctggccaccaacgacctggaaatccgcggcgccggcgagctg
ctgggcgaaggccagagcgggcagatccaggccgtgggctttaccctttacatggaaatg
ctcgaacgggcggtcaaggccattcgcaagggcacacagccgaacctggaacagccgctg
ggcggtggcccggaaatcaacctgcgcctgccggcactgatccccgaggattacctgccc
gacgtacatgcgcggctgatcctctacaaacgcatcgcctcggcagctgacgaggagggt
ctcaaggacctgcaggtggagatgatcgaccgcttcggcctgctgcccgagccgaccaag
aacctgatgcgcctgacccagctcaagcttcaggcggaaaagctcggcatcaagaaagtc
gatgccggcccgaacggcggcaagctcgagttcgaggccgaaaccccagtcgacccgctg
accctgatcaagctgatccagggccagccaaaacgctacaagttcgaaggcgcaacccag
ttccgcttcctggtaccgatggaacggcccgacgaacgcttcaacactctggaggcgctg
ttcgagcgcctgaccccacagacagcctaa
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integrated database retrieval system
