Paenibacillus polymyxa E681: PPE_01962
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Entry
PPE_01962 CDS
T01319
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ppy
Paenibacillus polymyxa E681
Pathway
ppy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPE_01962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppy03019
]
PPE_01962
Messenger RNA biogenesis [BR:
ppy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PPE_01962
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_KhpA-B
KH_PNO1_2nd
HDOD
KH_NusA_2nd
KH_2
Motif
Other DBs
NCBI-ProteinID:
ADM69798
LinkDB
All DBs
Position
2086058..2087602
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AA seq
514 aa
AA seq
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MMTAIWFVLVAVAALFFGFGIGYFIRKSIAEAKISSAEEAAAQIVENAKKEAEALKKETV
LEAKDEIHRIRAEAEKETRERRNEIQRQERRLLQKEESLDKKLESLERKEEQVANKEKRI
DETQQQIDLIYKSQVTELERISNLTMEDARSIILTNVEQEVRHETAQMIKEIEQQAKEEA
DKKSREIITLAIQRCAADHVAETTVSVVTLPNEEMKGRIIGREGRNIRALETLTGIDLII
DDTPEAVILSGFDPIRREIARTALEKLVADGRIHPARIEEMVEKSRKEVDERIREYGEQA
TFEVGVHSLHPDLIKILGRLKFRTSYGQNVLKHSMEVAYLTGLMAGELGEDVVLARRAGL
LHDIGKALDHEVEGSHVEIGVELAKKYKEHPVVINSIASHHGDCEATSVIAMLVGAADAL
SAARPGARRETLETYIRRLEKLERISESFEGVEKSYAIQAGREVRVMVQPEKIDDAEAFR
LARDITKTIENELDYPGHIKVTVIRETRAVEYAK
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgatgactgcgatctggttcgttctcgttgctgtagccgcgttattctttgggttcggg
attggttattttattcgcaaatctattgcagaagctaagatctccagtgcggaagaagct
gccgcgcaaatcgtggagaacgcgaaaaaagaggcagaagcgctgaagaaggaaacggta
ttggaagcgaaagatgaaatccaccgcattcgtgccgaagctgaaaaagaaactcgtgaa
cgtcgcaatgaaattcaacgacaggaacgaagattgctgcaaaaagaagaatcgctggat
aaaaaattggaatcgctggaacgcaaagaagaacaagtggccaacaaagagaaacgaatc
gatgaaacccagcagcaaattgatttgatttacaagagccaggtaactgagttggaacgt
atttccaatctgacgatggaagatgcaagaagtattattctgaccaacgtagagcaggaa
gttcgtcatgaaacagctcagatgattaaagaaattgaacagcaggccaaagaagaagcg
gacaaaaagtctcgtgaaatcatcacactggccatccaacgctgtgcggcagatcatgta
gcagaaacgacggtttctgttgtcacattgccgaacgaagaaatgaaaggccggatcatc
gggcgcgaaggccgtaatatccgtgcacttgaaacccttacaggaattgacctcattatt
gatgatacaccggaagctgttattttgtccggatttgatccgattcgtagagagattgcg
cgtactgcgcttgaaaagctcgtagcggacggacggatacatccggctcgtattgaagag
atggtggaaaaatcccgtaaagaggtggacgaacgaatccgtgagtatggtgaacaggcc
acctttgaggtgggcgtgcatagcttgcatccggatttgatcaagatcttgggacgtctc
aagttccgtacgagttacggacagaacgtattgaagcactcgatggaagttgcatacttg
acaggtctaatggccggggaactgggcgaagacgttgtactggcaagacgggcaggattg
ctgcatgacatcgggaaggcgctggatcacgaagtggaaggatcgcacgttgaaattggc
gtggaactggcgaagaagtacaaggaacacccggtcgtcatcaacagcattgcttcacat
cacggcgactgcgaagcgacttcagtgatcgccatgctggttggggcggcagatgccctg
tcagcagcaagaccaggagcgcggcgtgaaacgctagagacgtacatccgtcgtcttgag
aagctggaacgcatctccgaatcttttgaaggcgttgaaaaatcatacgcgattcaagcc
ggacgcgaagttcgtgtcatggtacagccagagaaaattgatgatgcggaagcattccga
ctggcccgcgatattacgaaaacgattgaaaatgaactggactatccgggacatatcaag
gttaccgtcatacgcgagacccgtgcggtagaatacgcaaaataa
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