Pongo pygmaeus (Bornean orangutan): 129036619
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Entry
129036619 CDS
T10128
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129036619 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppyg03019
]
129036619 (SKIC3)
Messenger RNA biogenesis [BR:
ppyg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
129036619 (SKIC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_8
TPR_16
TPR_17
TPR_14
TPR_12
TPR_CcmH_CycH
TPR_11
ANAPC3
ARM_TT21_C
TPR_9
ARM_TT21_2nd
TPR_15
Fis1_TPR_C
Sel1
ARM_TT21_5th
TPR_5
Coatomer_E
BTAD
T7SS_EccA1_N
TPR_30
Retrotran_gag_2
E_motif
DUF7017
PknG_TPR
TPR_20
Motif
Other DBs
NCBI-GeneID:
129036619
NCBI-ProteinID:
XP_054343985
LinkDB
All DBs
Position
4:complement(99379324..99475585)
Genome browser
AA seq
1564 aa
AA seq
DB search
MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
SAYKKAAELEPDQLLAWQGLANLYEKYNHINAKDDLPGVYQKLLDLYESVDKLKWCDVCK
KLVDLYYQEKKHLEVARTWHKLIKTRQEEGADNQELHQLWRKLTQFLAESTEDQNNETQQ
LLLTAFENALGLSDKIPSEDHQVLYRHFIQSLSKFPHESARLKKACEGMINIYPTVQYPL
EVLCLHLIESGNLTDEGQQYCCRLVEMDSKSGPGLIGLGIKALQDKKYEDAVRNLTEGLK
ESPVCTSGLYHLAEAQVKMHRPKEAILSCSQALKIIDNLGASGNSLYQRNLCLRLKAEAL
IKLSDYDSSEEAVRTLDQISDADNIPGLLVLKSLAYRNKGSLDEATKIMEDLLSSYPDLA
EVHALEALIHFTKKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMGEETRKDKTKALT
HFLKAARLDTYMGTVFCYLGHYYRDVVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVE
LEDMETALAILTTVTQKASAGTAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNC
WESLGEAYLSRGGYTTALKSFTKASELNPESTYSVFKVAAIQQILGKYKEAVAQYQMIIK
KTEDYVPALKGLGECHLMMAKAALVDYLDGKAIDYIEKALEYFTCALQHRADVSCLWKLA
GDACTCLYAVSPSKVNVHVLGVLLGQKEGKQVLKKNELLHLGGRCYGRALKLMSTSNTWC
DLGINYYRQAQHLAETGSNMNDLKELLEKSLHCLKKAVRLDSNNHLYWNALGVVACYSGI
GNYALAQHCFIKSIQSEQINAVAWTNLGVLYLTNENIEQAHEAFKMAQSLDPSYLMCWIG
QALIAEAVGSYDTMDLFRHTTELNMHTEGALGYAYWVCTTLQDKSNRETELYQYNILQMN
AIPAAQVILNKYVERIQNYAPAFTMLGYLNEHLQLKKEAANAYQRAILLLQTAEDQDTYN
VAIRNYGRLLCSIGEYDKAIQAFKSTPLEELEDIIGFALALFMKGLYKESSKAYERALSI
VESEQDKAHILTALAITEYKQGKMDVAKTLLFKCSILKEPTTESLQALCALGLAMQDATL
SKAALNELLKHIKHKDSNYQRCLLISAIYALQGRSVAVQKQVSKAVHSNPGDPALWSLLS
RVVAQYAQRNAKGGVVAGNVAHILDSNHGKKALLYTAVNQLAMGSSSAEDEENIALKTIQ
KAALLSPGDPAIWAGLMAACHADDKLALVNNTQPKRIDLYLALLSAVSASIKDKKFFENY
NQSLEKWSLSQAVTGLIDTGRISEAETLCTKNLKSNPDQPAVILLLRQVQCKPLLESQKP
LPDAVLEELQKTVMSNSTSVPAWQWLAHVYQSQGMMRAAEMCYRKSLQVASQQGSWSGKL
SSLLRLALLALKVCMANISNDHWPSLVQEATTEALKLCFCPLAVLLQALLQFKRKMGARE
TRRLLERVVYQPGYPKSIASTARWYLLRHLYAKDDYELIDVLVNNAKTHGDTRALELNQR
LSSQ
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaaggaagtgaagactgctctaaaaagtgctagagatgcaatcagaaacaaa
gaatacaaagaagctttgaaacactgtaagacagtgttaaaacaagagaaaaataactat
aatgcctgggtttttattggtgttgctgcagctgaactagaacaacctgatcaggcccag
agtgcctataaaaaagctgctgaattagagccagaccaattactagcttggcaggggtta
gcaaacttgtatgagaaatataatcacataaatgctaaggatgacttgcctggtgtttac
caaaagctcctggatctttatgaaagtgttgacaaactgaagtggtgtgatgtctgcaag
aaacttgtggatctatattaccaagaaaagaaacacctagaggtggctcgaacatggcac
aagttgataaaaacacggcaggaagaaggtgcagacaaccaagagcttcatcaactatgg
agaaaattgactcagttcctggctgaaagtacagaggaccagaataatgaaactcagcaa
ttgcttttaactgcttttgagaatgcactgggattatcagataagattcctagtgaagat
caccaagtactttataggcatttcattcagagtttatccaaatttcctcatgagtctgct
agattgaagaaggcctgtgaaggaatgataaacatctatcctactgtacagtatccatta
gaagtgctttgtttgcatttaattgaatcaggaaatcttactgatgaggggcagcagtat
tgttgtagattagtggaaatggattcaaaaagtggtccaggcctcattggcttaggcatt
aaagcattacaagacaaaaagtatgaagatgctgttaggaacctaacagaagggttaaag
gaaagccctgtctgcacaagtggattgtatcatctggcagaagcccaggtcaaaatgcat
agacctaaagaagctattctttcatgcagtcaagctctgaagatcatagataatcttggt
gcgtctggtaacagtctttatcagaggaatctttgtcttcgtttgaaagcagaggctttg
attaaactctcagattatgactcttcagaggaagcagttcgtacgcttgatcagatttct
gatgcagataatatcccaggacttttggttctcaaaagcttggcctatcggaacaaaggt
tcattagatgaagctacaaagattatggaagaccttctctcttcttaccctgacctagct
gaagttcatgcccttgaggctttgattcatttcaccaaaaaggactatctacaagcagaa
aaatgttttcagagagctcttgagaaagatactgaagttgcagaatatcattaccaactt
ggattaacatactggttcatgggtgaagagacaagaaaagataaaacaaaggctcttacc
cactttctgaaggctgcaagactggatacatatatgggcacagttttctgctatttaggt
cattattatagagatgtagtgggagataaaaacagagctcgtggatgttataggaaagcc
tttgaattagatgacactgatgctgaatctggagctgcagcggttgacctaagtgtggag
cttgaagatatggaaactgctttagctatcctaacaacagtaactcaaaaggcaagtgct
ggaacagcaaaatgggcctggcttaggcgaggactatactatttgaaagctggtcagcat
tctcaagcagtggctgatttacaggcagcattaagagcagacccaaaggacttcaattgt
tgggaatcgttaggagaagcatacttaagcagaggaggctacacaacagccttgaagtcc
ttcacaaaagccagtgagctgaacccagaatccacatacagtgtgtttaaggttgcagca
atacagcaaatcctaggcaaatataaggaggctgtagctcaataccagatgatcattaaa
aagacagaagattatgtgcctgctttaaaaggtttgggtgaatgccatcttatgatggca
aaagcagctctagttgattatcttgatggaaaagccatagactacatagaaaaagcactg
gaatattttacttgtgctctacagcatcgagctgatgtgtcctgcctctggaagctagct
ggggatgcttgtacctgtctgtatgctgtctcaccatctaaagtgaatgttcatgtttta
ggagtccttctaggtcagaaagaaggaaaacaagtattaaagaaaaatgagctcctccac
cttggaggaaggtgttatggtcgtgcattaaaactgatgtctacatctaatacatggtgt
gaccttggaattaattattatcgccaagcacaacatctagcagaaacaggcagcaacatg
aatgatcttaaggagttgctggagaaatctttacattgtctgaaaaaagcagtgagactc
gacagtaataatcacttatactggaatgctcttggtgtggttgcatgttacagtggtatt
ggaaattatgcccttgctcagcactgtttcatcaaatcaatccagtcagaacaaattaat
gctgttgcatggaccaacttgggagtgttatacctcacaaatgaaaatattgagcaagct
catgaagctttcaaaatggcccaatcccttgatccatcttatttaatgtgctggattgga
caagctcttattgctgaggcagttggaagttatgacaccatggatctcttcaggcacact
acagaactaaatatgcataccgaaggagcattaggttatgcgtattgggtctgcacaaca
ttgcaagataaaagcaacagagaaacagagctgtaccagtacaacatcctccagatgaat
gctattccagcagcacaagttattttgaataaatatgtagaaagaattcagaattatgct
ccagctttcacaatgttgggttacttaaacgaacatctacaactgaaaaaggaagcagca
aatgcataccaaagggcaattttgttgttacagactgcagaagaccaagatacttacaat
gttgcaataagaaattacggcagattgttatgttccattggtgaatatgataaagctatc
caggcttttaagtcaacaccccttgaagagttagaagacatcataggttttgcattggct
ttattcatgaaggggctttataaagagagcagcaaagcctatgagagagccttgtctatt
gttgaatcggagcaagacaaagcccacatcttgacagctctggcaataactgaatataaa
caaggaaaaatggatgtagccaagacattgctatttaagtgctctatcttaaaggaacca
accacagaaagccttcaagccttatgtgctctggggttggcaatgcaggatgctacactg
tcaaaagcagcacttaatgagttactgaagcacatcaaacacaaagacagtaattatcag
aggtgccttcttatatcagcgatttatgcactccaaggccgcagcgtagcagtgcaaaaa
caagtatctaaagctgttcacagcaaccctggtgaccctgctctttggtctctgttgtct
cgagttgttgcacagtatgctcaacgaaatgcaaagggaggcgttgtagcaggaaatgtg
gctcatattctggactcaaatcacggaaagaaggcgttactgtacactgcagtaaatcag
ttggctatgggaagcagttcagcagaagatgaagaaaatattgcactaaagaccattcag
aaggcagctctcctttctccaggtgatcctgctatctgggctgggctaatggcagcctgt
catgctgatgataaactggccttagtgaacaacactcagccaaagaggatagatttatac
ttggcactgttatctgctgtttctgcttcaattaaagacaaaaaattctttgaaaattac
aaccagtctcttgaaaagtggtctctctcacaagctgtcactggtctaatagacacagga
agaatatctgaagctgaaactctctgcacaaagaatttaaaaagtaaccctgatcagcca
gccgttatcttacttttgagacaagttcagtgtaaaccactcctggagtcacaaaagcca
ctcccagatgctgtacttgaagaactacaaaaaacagtcatgtccaactcaacctctgtt
ccagcttggcagtggctggcacatgtgtatcagtctcaaggaatgatgagagctgcagag
atgtgttacagaaagagtctacaagtggcatcccaacagggcagttggagtgggaagctc
tcaagtctgttgagactagcactacttgcattaaaagtctgtatggctaacatttccaat
gaccactggccatctttggttcaagaggctacaactgaggccctgaagctttgcttttgt
ccactggctgttcttttacaagctttgttacaattcaaacgcaaaatgggggcaagagag
acacggcgtcttttggaaagagtggtatatcagcctgggtatcccaaatctattgcatca
actgcacgttggtacctactgagacacttatatgccaaagatgactatgagcttattgat
gtgctggtaaacaatgccaaaactcatggagatacaagagcattggaactgaatcagaga
ttgtcctcacaataa
DBGET
integrated database retrieval system
