Photinus pyralis (common eastern firefly): 116176871
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Entry
116176871 CDS
T07438
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
ppyr
Photinus pyralis (common eastern firefly)
Pathway
ppyr04512
ECM-receptor interaction
ppyr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ppyr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116176871
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116176871
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ppyr00535
]
116176871
Proteoglycans [BR:
ppyr00535
]
Extracellular matrix (ECM) proteoglycans
Others
116176871
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
116176871
NCBI-ProteinID:
XP_031351545
LinkDB
All DBs
Position
Unknown
AA seq
981 aa
AA seq
DB search
MGTLKFRELGSWRQLMKILLWLQILRSVVGQLSSEEEQGQPCADFKAGDDDLQGYDFISR
FRLDIPETQYPGVTRVRGSHRMQTAYRLDKEANLTVPTRDIFPEGLPDQFSFICTFRSRK
IQKSSWNIVQITDFDSNPQFLVTINPRKQTVEFSILNNVGKLQTLSFINAPVFDKNWHKL
HFGVSQDTVVLYVDCEEISRNTLKEPRGLIDVNGLIAIAKFSANKQTVPGTQLIDLQWML
MSCDPTSPQRESCSEIPLGTAPQQNGKPSPPACETPCPPGPPGRNGTQGRQGPIGPIGPI
GEPGFPGGRGPQGRPGPPGVAGLQGLPGIKGVQGPPGVPGTSGLDGARGFTGEKGSEGPP
GEKGERGLDGLPGEAGPVGPRGPPGLGGTGQTVEGPPGPIGPQGPPGLQGLQGPQGRKGA
TGVPGVIGFPGPVGLTGEKGERGDPGPEGKIGLPGEPGAPGASLNGNTVEGPVGPAGKPG
IPGIPGIDGAKGEPGEPGLRGVKGNKGEAGERGLIGLPGAPGTPGLDGAKGQMGFTGQPG
MQGRIGLTGAPGLAGVAGTHGLPGEKGERGERGPPGSATAVGGTNEPGPAGQKGEPGRAG
KDGAKGEPGSPGLQGAQGLPGIDGAPGIEGTSGKDGEVGPSGPRGELGPQGPRGPSGLPG
KIGPPGFVGKPGKKGESGVPGEQGPVGPRGLSGNMGTPGLPGSPGLMGLPGMQGKPGPAG
APGSAGPAGECTCASNLIIDGSAGIPGAVGPRGHSGPPGMPGERGASGERGPLGATGSPG
MPGKEGPPGLPGPPGQRGLPGMPGLQGVAGRSYSEGEIRDICASVLRERMDELTLGLRGP
PGPPGPSRTGKPGKSGVPGIPGDQGPPGLQGERGFVGLPGPAGTPGTMGPPGDRGEKGDQ
GIEGTGSEGPIGPRGPPGPTGPSGVGLPGRAGDRGESGRPGLTGPRGAPGAQGPPGFCEY
CNYQGAASYQSLRVAGNEKGP
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggggactttgaaatttagagaattaggaagttggagacagcttatgaagattttacta
tggcttcaaattttacgatcagttgtaggacaattatcatcagaagaagaacaaggacaa
ccatgtgcagactttaaagccggagacgacgatttgcaaggttacgattttattagtcga
tttcgattagacattcctgaaacgcaatatcctggtgtaacgagagtgcgaggttcccat
aggatgcaaacggcgtatagactagataaagaagctaatttaactgttcctacaagggac
atcttcccagaaggactgccagatcaattctcgttcatatgcacctttagatcaagaaaa
attcaaaaatcgtcttggaatatagtacaaattaccgatttcgattccaatcctcaattt
ctggtaacaataaatccacgaaagcaaacggttgagtttagtatattaaataatgtgggt
aaactgcaaaccttgtcatttataaatgcccccgttttcgataaaaattggcataaactt
cattttggagtatcgcaagataccgtcgtactttatgtggattgtgaagaaattagtcga
aatacactcaaagaaccaagaggcctcattgatgtaaatggattaattgccattgcaaaa
ttttcagctaacaagcagactgtaccgggaacgcagttgatcgacttgcagtggatgtta
atgagctgtgaccccacaagcccacagagagaatcttgcagtgaaattccattaggcaca
gctcctcaacaaaatggaaagccttcgccacccgcatgtgaaacgccatgcccgcctggc
cctccaggacgcaatggaacacaaggtagacaaggcccgataggtccaatcggccctata
ggcgaacccggttttccaggaggtagaggtccacaaggtcgcccaggtccaccgggtgta
gcaggactgcaaggattacccgggataaaaggagttcaaggtcctcctggtgttcctgga
acatcaggattagatggcgctcgtggttttactggtgaaaagggttcagaagggccgccc
ggcgagaaaggcgaaaggggattagatggtttacctggagaggctggacctgttggacca
agaggtcctcctggactgggcgggacaggacaaacagttgaagggcctccaggcccaatt
ggaccgcaaggcccgccagggctacaaggattacaaggaccacaaggccgtaagggcgca
acaggagtacctggtgttatcggattccctggtcccgtcggtttaacaggagagaaaggg
gaaaggggagatccaggacccgaaggcaaaattggtctacccggggaaccgggagcacca
ggtgccagtcttaatggaaataccgtagagggacctgtgggccctgctggtaaaccaggc
attccaggaattccaggcatcgacggcgccaaaggagaaccaggtgaacccggtttaaga
ggtgtaaaaggaaataagggcgaagcaggagaacggggattaattggccttccgggcgca
cccggtacgccgggcttagatggagctaaaggccaaatgggatttaccggacaaccagga
atgcaggggcgtattggattaacaggggcgcctggattagcaggagtcgctggaacacat
ggattgcccggagaaaaaggagagcgaggtgaacgggggccgccagggtctgcaactgca
gtaggaggtacaaatgaaccgggtccggctggtcagaaaggggaacccgggcgcgctgga
aaggacggagccaaaggggaacctgggtcaccaggtcttcaaggtgcacaaggtttaccc
ggtatcgatggagcgcctggaatagagggaacttcaggaaaggatggtgaagttggtcca
tcgggtccacgaggtgagctaggtccacaaggacctcggggaccaagcggtttgccgggt
aaaattggaccgcctggatttgtcggtaaacctgggaagaaaggcgagtccggagtacca
ggagagcaaggtccagttgggccgagaggtttatctggaaacatgggaacaccaggtttg
ccaggctcgcctggtttgatgggattgccaggaatgcaagggaaaccaggacctgcggga
gcgccaggaagtgccggcccagccggcgaatgtacatgcgcaagtaatttaataatcgat
ggatcagcagggatacctggcgcagttggacctagaggccattctggtccaccaggaatg
ccaggagaacgtggtgcttctggagagagaggaccgcttggagctacgggatctcctgga
atgccaggcaaagagggtcctccgggattaccaggtccacctggccagagaggattacct
ggaatgcctggactacagggagttgcaggtcgcagctacagtgaaggtgaaattcgagat
atttgcgcatcggtcttacgagagcgtatggacgaattaacgctgggattacgggggcct
cctggcccccctgggccgtcacgtaccggaaaacctggaaaatcgggggtccccggaatc
ccaggtgaccaaggacctccaggtttacaaggagaaagaggatttgtaggtttacccgga
ccagcgggtacaccaggtacaatgggacctccgggcgatagaggagaaaagggcgatcaa
ggaattgaaggaactggcagtgaaggacctatagggcctcgaggaccaccaggtccaaca
ggcccttctggtgtaggacttcctggtagagcaggtgaccgaggtgaatccggtagacca
gggttaacgggtcctcgaggagctccaggtgcacaaggtcctcctggattttgcgaatat
tgtaactatcaaggtgctgcctcataccaatcgcttagggtagcgggaaatgaaaaagga
ccgtag
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