Photinus pyralis (common eastern firefly): 116180220
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Entry
116180220 CDS
T07438
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ppyr
Photinus pyralis (common eastern firefly)
Pathway
ppyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116180220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppyr03019
]
116180220
Messenger RNA biogenesis [BR:
ppyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116180220
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116180220
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
116180220
NCBI-ProteinID:
XP_031355964
LinkDB
All DBs
Position
Unknown
AA seq
2352 aa
AA seq
DB search
MNLDSLSFTLSQISYLVASLTKKNHKQVVEELLRLVTLHGLEADRHLLQCLFSSVDFSES
SNKIVAPGLHNQVLLEHCATVINKPSLLSAICCTVNKFANNQKSLKVGPLFFQQLCKCLR
LSAVQEVVFALALRHSENREVASLAQAQLKLSLPALVQSYVDTEGSSRQHEGGLHDTTPE
VLHLILSAVLKSPKEVGLTNEIHTVFLNSLQRDFSRDLVPVVLAPLVYPDQCELAPPEMS
SEGPGLSGGMLDSSLADLVSEMGYGFTLTLEDCRNNLLKFIGRDINPTAVARTLAFLCRT
HSGLEESLNLPGSFSKDGRNTWNVEVFVQALKEVCPTLQWSSVILELDHSEFVIKDRQGL
IMLLSALRLGLKNVGFHPETFPVDHLYRRWTNVEGQFSLMQQILKNSDVFCFADYPFLSV
PVDILKTPPEQDSKELSNWRNLNLVELLLTISECGYYAQVQELFKVPLQNCPDVLILTLM
QINGPVTMLRQELFTNLIPIFLGNHPNSAIILHHAWHTQTLNIKHIVMHAMADWYARGEY
DQTRLSRILDVAQDLKALSMLLNAQSYPFIIDLACLASRREYLKLEKWITDKIREHGEPF
VTACIKFLQRRCPQLIGKSDDALPKAVLLPKETLTTILLCLQQASCNMNSEIQETICAMS
TNCTILLKTHQQPSSILRSHRTLDGPFNPSSMAQQLYNSNVDPISITSTLANMTIGGSNN
SAFNLQGGLGPLVSSPGSPSRLLQSNSPFPMIPIQHQGPVGTAGSLLPAINTIGNLSRIG
GPNPIVEKARLQDSNSILTEIAPNVTKDIEDEANSYFQRIYNHPPHPTLSIDEVLDMLKK
FQESASKREREVFNCMLRNLFEEYRFFPQYPDKELHITAQLFGGIIERGLVSNYMALGLA
LRCVLDALRKQEGSKMYHFGVAALDRFKSRLKDYHKYCEHVRAIPHFNEFPPHLIDYIEY
GLQSLEPPNKPQGTVLPPNLSSILGPSYKNSSSTTSKSSTISSRPSIANATNIDTLLVAT
EKEEKVISPPESLQEKTFFIFNNLSQLNLQSKCDELRELVSDEYWPWISQYLVLKRASIE
LNFHALYSNFLDTLKVGDVFRMVTRETFRNIKVLLKSDKGIANFSDRSLLKNLGHWLGML
TLGRNKPILQIDIDIKALIIEAYHKGSQELLYVVPFVAKILESCAKSKVFKPPNPWTMGI
MNVLAELHQEPDLKLNLKFEIEVLCKTLEIDFAQLKPAIYLKDTERLRKIEYQLSQQSKN
TESILSSSQPSIVSNTDSELVSVSTQGSSSPPLTQNSSSTPTSSLVAPPEPRFSYLDIQL
AGNAALHAHLTVSPAILIFQNQPPLKSLVRSAVERAVQEWINPVVDRAVKIALTTCEQLI
RKDYALDGDENRLRNAAHYLVRYLTAGMVMITCRDQLLGSINTHMKNALQNAIVGATIQQ
KEMIEQAASVVAQDNMELACAFIQKTAIEKAIPEIDKRLMNDYEVRKIARQEGRRYCDSM
ALTYQADRMPEAIRLRVGGVTPQQLAVYEEFAHNIPGFLPLSDRDTAPFIHKPTVNLEPQ
GPTNVFQTSQSIIPSDETSTVYDKLLGEVEQFIQATGNQPSFSIMNNNMHILRDCLMHAM
RNRDMILSAMTLTQKCVEGLQDGLMSVANDPDHVLHRYKEIYVRVLKTMQDPRAFGQQWT
NKQVTRFLTECRDDLRYNLDAVDTLIRAGLVNLPQYDVALTQLMDNGLNYVAVNFATQLI
PLFLIEERTNQNVTENDLPNTIEMLVKLATHTRQPPEGLANVIELLRQHHDQTTFFGDRA
PHGPSIHIHNGILQVRSLNYEDPPGLMEKTDFLLRDWIGIYHSQPSGRDSTKAFSMFVHQ
MNVHGILKTDDLITRFFRLSTQLCVEAVYRNVTEGSASNQTVLRTKCYHTLDPFVRLIAL
LVKHSGDASNATTKIHLLNKVLGIVAGCLLQDHEQRAGDFQQLPYHRIFIMLFLELCSPE
PVLETINYQVLTAYCHTLHILRPSKAAGFCYAWLELISHRVFIGRMLAITPQQKGWSMYA
QLLIDLFKYLAPFLRNAELAKPVTMLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNC
IQMRNLILSAFPRNMRLPDPFTPNLKVDVLQEITYSPRVITNFATLITPLQFKKDLDSYL
KQRAPVTFLSELRSNLQVSNEPGMRYNIPLMNALVMYVGTQAIGYIRNKSLTPNMSTIAH
SAHMDIFQNLTVDLDTEGRYLFLNAVANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQI
TRVLLERLIVNRPHPWGLLITFIELIKNPSYKFWNHEFVHCAPEIEKLFESVARSCMVQK
TTVQAQEGDVQE
NT seq
7059 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaataagttatttagttgcgtcatta
actaaaaagaatcataagcaagtagtagaggaactattaaggttggtgactttgcacggc
ctggaggcggatcgtcacttgctccaatgcctgttttcatcggtggacttttcagaatct
tcgaataaaattgttgcgcccggtcttcacaatcaagtgttgctagagcattgcgctacc
gttatcaataagccctcgttattgtcggctatttgttgtaccgttaataaattcgccaac
aatcagaagagtttgaaagttggacctctgttctttcagcagctgtgcaagtgccttcgc
ctctcagctgttcaagaagttgtattcgctctagcgttgcgtcactccgaaaatcgagag
gtggcgagtctcgcccaagctcaattgaaactatcccttcccgctctcgttcagtcgtat
gtagatacggaaggaagtagtcgtcaacacgaaggtggccttcacgataccacgccggaa
gttttacatttgatactgtcggccgtacttaaatcgcccaaagaggtcggactcaccaac
gagattcacacggtatttttgaactcgctacaacgagacttctcgagggatctagttccg
gtcgtgctcgcgcccctagtctacccggatcagtgcgagttagcgccgcccgaaatgtcc
tcggaaggccccggtttatccgggggtatgcttgatagttcattggccgatctcgtgtcg
gaaatgggttacggatttactcttacgttggaagactgccggaataatttacttaaattt
atcggacgcgacatcaatcccacggccgtcgcgcggacgttagccttcttatgccggaca
cacagtggccttgaggaatctttaaatctacccggctctttcagcaaggacggaaggaac
acgtggaatgtcgaggtgtttgttcaagctctaaaggaggtctgtcctacgttacaatgg
agtagcgtaattctcgagctggaccattcggaattcgtaataaaagacaggcagggcctt
atcatgcttttaagtgcacttcgtttgggcttgaaaaacgtcggctttcatcccgaaacg
ttccccgtcgatcacctataccgaaggtggacgaacgtcgagggacagtttagtttaatg
caacagattttgaaaaactcggacgtgttttgcttcgccgactatccgttcttatcagtg
cctgtcgacatactaaagacgcctcccgaacaggacagcaaggagttgagcaactggcgc
aatttaaatttagtggaattgttgttgacgatctcggagtgcgggtactacgcgcaagtg
caagaattgtttaaagttcctttacaaaactgtccggacgttttaatattgactctgatg
caaatcaacggtccggtcacgatgctacggcaggaattattcacaaatctcattcctata
ttcctcggcaatcatccgaactcggccattattttacaccacgcgtggcacacccagacc
ctcaatattaagcacatcgtaatgcacgcaatggccgactggtacgcccgaggcgagtac
gaccagaccagactgtcccgaatactcgacgtcgcccaagacctaaaggcactgtccatg
ctactcaacgctcaatcctatccgtttataatcgacctggcctgtctcgcgtcgcgaagg
gaatatctgaaattggagaaatggattacggacaaaattcgcgagcatggcgaacctttc
gtgaccgcctgcattaagttcctgcaaaggcgatgtccgcagctcatcggtaaaagcgac
gacgcacttcccaaggccgttctactaccgaaagagaccttaaccacgatcctgctctgt
ctacaacaagcctcctgcaacatgaactcggaaattcaagagaccatctgcgcgatgtcg
acgaactgcaccatccttttaaaaacccaccagcagccgtcctcgattctgcgatctcat
cgcaccctggacggcccgttcaatccatcgagcatggcgcaacaactttacaattcgaac
gtcgatcccatcagcatcacatcgacgttagccaacatgacgatcggcggctctaacaac
tccgcgttcaatctgcaaggaggactaggcccgctggtctcctcgcccggttcgccctct
cgactgctgcaatcgaacagcccgtttccgatgatacccatacagcaccagggaccggtc
gggaccgccggctccctactgcccgcgatcaacacgatcggtaacttgagcaggatcggc
gggccaaatccgatcgtcgaaaaggcccgactgcaggacagcaattcgatactgaccgag
atcgcaccgaacgttacgaaggatatcgaggacgaggcgaacagctacttccagaggatc
tacaaccatccgcctcatcccactttgtcgatcgacgaggttctggatatgctcaagaaa
tttcaagagtccgcatcgaaacgcgaacgggaggtttttaattgcatgctgcgaaaccta
ttcgaagagtaccgtttctttccgcaatacccggacaaggagctccacataacggcccaa
cttttcggcggaataatcgaacgcggtctcgtatcgaactacatggcgctgggactcgcg
ctgcgttgcgttttggacgcgctgaggaagcaggagggctcgaagatgtaccactttggc
gtcgcggcgctagatcggttcaagtcgcgactgaaagactatcacaaatattgcgaacac
gtgcgggccataccgcactttaacgaatttccgccgcatctcatcgattacatcgagtac
ggattgcagagtctcgagccgccaaataaaccgcagggtacggttttgccgccgaatttg
tcctcgattttggggccctcgtataaaaacagttcgtccacgaccagcaagtcgagcaca
attagtagtcgaccgtcgatcgccaacgcgacaaacatcgacactttgctggtagctacg
gaaaaagaagaaaaggtgatttcccccccggaaagtctccaagaaaaaaccttcttcatc
ttcaacaatcttagccaattaaatttgcaatcgaagtgcgacgagctgcgcgaattagtc
tcggacgaatattggccttggatatctcagtacctggttttgaaacgtgcttccatcgaa
ctaaacttccacgctttgtactcgaattttttagacaccctgaaagtcggcgacgtattc
agaatggtcacccgggagacctttcgtaatataaaggtcctcctcaaatccgacaaggga
attgcgaatttttccgatcgatccctcttaaaaaatctcggccattggctgggaatgtta
actttgggacgtaacaaaccgattctgcaaatcgatatcgacataaaagcgttgatcata
gaagcctatcataagggaagccaggaattgctgtacgtcgttccgttcgtcgcgaaaatt
ctggagtcgtgcgcgaaaagtaaagtatttaaaccgccgaatccctggacgatgggaatc
atgaacgttctggcggaattgcatcaggagcccgatttaaaattgaatctcaaatttgag
atcgaggtcctgtgtaaaactctggagattgatttcgcgcaactaaagccggccatttac
ttaaaggacaccgaaagattgcgaaagatagaatatcagttgtcgcaacagtcgaaaaat
accgaatcgatcctgagctcttcgcaaccgagtatcgtatcgaacaccgattcggagctg
gtttccgtttcgacgcagggatcctcgtcgccgccgctcacacagaatagcagctcgacg
ccgacgtcgtcgcttgtcgccccgccggaaccgaggttcagttatctcgacatacaattg
gccggtaacgcggcgcttcacgcgcatcttaccgtttcgcccgccattttgatatttcaa
aatcagcctccgttgaagagcctagttcgaagcgcggtcgaacgcgccgtgcaagagtgg
atcaatccggtcgtggatagggcggtaaaaatcgcgctgacgacgtgcgagcaactaatt
cggaaggattacgccttggacggcgacgaaaatcgacttcgaaacgccgcccactacttg
gtccgatacctgaccgccggaatggtgatgatcacgtgtcgagatcagctgttgggctcg
attaatactcacatgaagaacgcgcttcagaacgcgatcgtcggcgcgaccatacagcaa
aaggagatgatcgagcaggcggcgagcgtggtcgcgcaagataacatggagctcgcgtgc
gcgtttatacagaagaccgcgatcgagaaggccatacccgaaattgacaagcgcctgatg
aacgattacgaggttaggaagatcgcgcgccaggagggaaggcgctactgcgattcgatg
gcgttaacttatcaagccgaccgaatgcccgaagcgattcggctgcgagtcggaggcgta
acgccccaacagttggccgtgtacgaggagttcgcgcacaacataccggggtttctgccc
ctatccgatagagacacggcgcctttcattcacaaaccgacggtcaatttggagccgcaa
ggtccgaccaatgtgttccagacatctcagtcgatcattccgtccgacgaaacgagtacg
gtgtacgataagctgctaggcgaagtggagcagttcattcaggccaccggcaatcagccc
agctttagcataatgaataataacatgcacatactgcgagactgtctaatgcacgccatg
cgcaatcgagatatgattctatcggcgatgactctcacccaaaaatgtgtggagggctta
caagatggtttaatgtcggtagcgaacgatcccgatcatgtcctacaccgatacaaggag
atttacgtacgcgtgttaaagacaatgcaagatcctcgagcttttggccagcaatggacg
aacaagcaggttacccgcttccttaccgaatgccgcgacgatctgcgctacaacttggac
gccgtcgataccctcattcgcgccggcttggtcaatctgccccagtacgacgtcgcgctc
acccaactgatggacaacggcctcaattacgtcgccgtcaacttcgccacccagttaatt
cctttatttctcatcgaggagcgtacgaaccagaacgttaccgagaatgatctgccgaac
acaatcgaaatgctagtcaaacttgccacgcacaccagacagccgcccgagggattggcg
aacgtcattgaattgctacggcagcaccacgatcagacgacgtttttcggggatcgtgcg
ccccacggtccttcgatacacattcacaatggcatcttacaggtacgttctctgaactac
gaggatccgcccggtttaatggaaaagaccgacttcctccttcgcgactggataggaatc
tatcactctcagccttccggtcgcgactcgacgaaggcgttcagtatgttcgtgcaccag
atgaacgtgcacggaatattaaaaaccgacgacctaataacgcgcttctttcgactctcg
acccagttgtgcgtcgaggcggtttacaggaacgtaaccgagggaagcgcgagcaatcag
accgtgctgagaacgaaatgctatcacactttggatccgttcgttcgtctgatcgcgtta
ctggtgaaacactcgggggacgcgagcaatgcgactacgaaaattcatttgcttaacaag
gtcttgggaatcgtcgccgggtgcctgctgcaagatcacgagcagcgcgccggcgatttc
cagcagctgccctatcacagaatcttcataatgctcttcttggaattgtgctcgcccgag
ccagttttggagacgatcaactatcaggtcttgaccgcttactgccatactctgcacatt
ttaaggccctcgaaggcggccggcttctgctacgcctggctggaactgatatcgcatcgg
gtcttcatcggtagaatgttggcgattactccgcagcaaaaggggtggagcatgtacgct
cagcttttaatcgacttattcaaatacctcgcgccgtttttgagaaacgcagagttggcg
aaaccggttacgatgctgtacaagggaacgctccgagtcctactggtgctactccacgac
tttcccgaatttttatgcgactaccactacggattttgcgacgttattccgccgaactgc
atacagatgcgaaacttgattctatccgcgttcccgcgcaacatgcggctaccggatccg
ttcacgccaaatctgaaggtggacgttctacaggaaattacgtactcgcctcgggtaatc
acaaatttcgccacgctaataacgccgcttcagttcaagaaagatttggactcgtacttg
aagcaacgggcaccggttacgttcctgtcggaactaagaagtaacttgcaggtctcgaat
gagccgggaatgcgttacaacattccgttaatgaacgcgctagtcatgtatgtcggcact
caagcgattggctacatacgaaacaaaagtttgacaccaaacatgtcgacgatcgctcac
agtgcacatatggatatcttccagaacttaaccgtcgatttggatacggaaggaaggtat
ctcttcctaaatgcggtcgcgaatcaattacgctaccccaacagtcacacccattacttt
tcgtgcacgttactgtacttatttgccgaagccaacaccgaggctatacaggaacagata
acgagagttttgttagagagactaatcgtaaatcggccccatccctggggactgctaatt
acgttcatcgagttaatcaaaaatccgagctataaattctggaatcacgaatttgtacat
tgcgcgcccgaaatcgaaaagttattcgaatctgtagctcggtcctgtatggttcaaaag
acaaccgttcaagcacaagaaggtgatgttcaagagtga
DBGET
integrated database retrieval system
