Podarcis raffonei (Aeolian wall lizard): 128399848
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Entry
128399848 CDS
T09310
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128399848 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
praf03041
]
128399848 (SF3B1)
03036 Chromosome and associated proteins [BR:
praf03036
]
128399848 (SF3B1)
Spliceosome [BR:
praf03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
128399848 (SF3B1)
Complex B
128399848 (SF3B1)
Complex C
U2 SnRNP specific factors
128399848 (SF3B1)
Chromosome and associated proteins [BR:
praf03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
128399848 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
TPR_DNAAF5
HEAT_EF3_N
HEAT_MROH2B_C
HEAT_ECM29
TPR_IPO5
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
VPS15-like_hel
Adaptin_N
Phage_T7_Gp15
UNC45-central
Motif
Other DBs
NCBI-GeneID:
128399848
NCBI-ProteinID:
XP_053217629
LinkDB
All DBs
Position
1:126720574..126744966
Genome browser
AA seq
1302 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKN
RRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGTTPKKLSNWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTERD
TPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGT
PAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYRVLPPPAGYV
PIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDV
DESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSP
TLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAK
AAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARH
TGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIE
SFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDE
EMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELAN
KVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQE
QTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVM
KTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTP
ILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFG
YIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELN
VQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGF
GCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVR
DVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYVL
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatatcgaagcacagattcgagaaatccaaggc
aaaaaagctgcccttgatgaagctcagggagtgggccttgattctacaggatattatgac
caagagatctatggcgggagtgatagcagattcgctggatatgtaacttcaatcgcagca
actgagctagaagacgatgacgacgactactcttctacaagcttgcttggccagaagaaa
cctggataccatgcaccagtggcactccttaatgacataccacagtcaaccgaacagtat
gatccgtttgctgagcatcgcccacaaaagatcgctgatcgggaagatgaatacaaaaac
cgcaggcggatgatgattatttcccctgagcgtcttgatccttttgcagatggagggaag
acacctgaccctaaaatgaatgcgagaacatacatggatgttatgcgtgaacaacatttg
acaaaagaagagagagaaattaggcagcaactagcagaaaaggctaaggccggcgaactt
aaagtcgtcaatggtgctgcgtcccagccaccatcaaaacgcaaacggcgttgggatcag
actgctgaccagactcctggcaccacaccgaagaaattatctaactgggatcaagccgag
acccctggacatactccatctttgcgatgggatgaaacacctggccgtgcaaagggtagt
gagacacctggagcaacacctggatcaaaaatatgggatccaactcctagccatacacca
gcaggagctgcaacacctgggcgtggggatactcctgggcatgcaacgccaggccacgga
ggtgcaacatccagcgcacggaaaaatcgatgggatgagactcccaaaacagaaagagat
actcctggacatgggagcggttgggctgaaacaccacgtactgatcgaggtggcgattcc
attggcgaaaccccaacccctggggcaagcaaaagaaaatcacgttgggatgaaacgcct
gcaagccagatgggggggagcacccctgtgttgacccccggcaaaacaccaattggtaca
ccagctatgaacatggcgacccccacaccaggtcacatcatgagcatgactcctgaacag
ctccaagcttggcggtgggaaagagaaatagatgagagaaataggcccctttctgatgaa
gaacttgatgccatgtttcctgagggatatagggttctccctcctccagcgggttatgtc
cctatccgtactccagctcgtaaacttacagcgacgccaacacccctgggcggcatgact
ggattccacatgcaaactgaagacaggaccatgaagagtgtcaatgaccagccctcagga
aatcttcctttcctaaaaccagatgacatacagtatttcgataaactactggttgatgtt
gacgaatcaacactcagtccagaggaacagaaggaaagaaaaataatgaaattgcttttg
aagattaagaacggcacccctcccatgaggaaggctgctttgcgacagattactgataaa
gctcgtgaatttggggcaggcccgctgttcaaccagattttacccttgctgatgtcacca
actcttgaagaccaagaacgccatttgcttgtcaaagttattgacagaatcttgtacaaa
ttagatgacctggttcgaccatatgtccacaagattcttgtggtcattgaaccgttgctg
attgatgaagactactatgccagggtagaaggcagagaaattatttccaacttggctaag
gctgccggactggcaactatgatttccactatgcgacctgatatcgataacatggatgaa
tacgttcgtaacacaacggctcgagcctttgctgtggtcgcctctgctttgggcattcca
tctctgttgccttttttaaaagccgtgtgtaaaagcaagaagtcctggcaagctaggcac
actggtatcaagattgtgcagcaaattgctattcttatgggctgtgccattttacctcat
ctcagaagtttggttgaaattattgagcatggcttggtggatgagcagcagaaagtacgt
accatcagtgctttggctattgctgctttagccgaggcagcaactccctacggcatagag
tcatttgactctgttttaaagcccctgtggaagggtatacgccagcacagaggaaagggt
ctggctgccttcttgaaagctatcgggtaccttattccacttatggatgcagaatacgcc
aattactataccagggaagtaatgttgatccttatcagagagttccagtctcctgatgaa
gaaatgaaaaagattgtactgaaggtggtaaagcagtgctgtggaacagatggtgttgaa
gcaaactacattaaaacagagattctgcccccatttttcaagcacttttggcagcacaga
atggcactggacagaaggaattacagacagttggttgacacaactgtggagcttgcaaac
aaagttggagcagcggaaattatttccaggattgtggatgatctgaaagatgaagctgag
cagtacaggaagatggttatggagacgattgagaaaatcatggggaatctgggagcagct
gatattgaccacaagctggaagaacagcttattgatggtatcctgtatgccttccaagaa
cagaccacagaggactccgtgatgttgaatggatttggaacagtggtcaatgctcttggc
aagcgagttaaaccgtacttgccccagatctgcggtacagttttgtggcgtttgaacaac
aagtcagccaaagtaaggcagcaagctgctgacctgatatcccgtactgcagttgtcatg
aagacttgtcaggaggaaaaattgatgggacacttgggtgtggtattatatgaatacctg
ggtgaagaataccctgaagtattgggcagtattctcggagcacttaaagctatcgtgaac
gtcataggtatgcacaaaatgacccctccgattaaagacttgctgccaaggctcacacct
atcttgaagaacagacatgaaaaagtgcaggagaattgtatagacctggttgggcgtatt
gcagacaggggggcagaatatgtttctgcaagagagtggatgagaatctgctttgagctg
ctggagttgctaaaagctcacaagaaagccatccgaagagcaactgtgaacacatttggt
tatattgcaaaggctattggaccacacgatgtgctggcgacgctgctaaataatttgaaa
gtacaagaaagacaaaacagagtgtgtacaacagtagcaatagctattgtagctgaaacc
tgctcccctttcacagtgctgcctgctctcatgaatgaatacagagttccagaactgaat
gtccagaatggtgtattaaaatcactttccttcctctttgagtatattggagaaatggga
aaggactacatttatgctgtaaccccattgcttgaagacgctttaatggacagggacctt
gttcacagacaaaccgctagtgctgtagtacaacatatgtcgcttggagtatacggcttt
ggctgcgaagactctttgaatcacttactgaattacgtgtggcccaatgtgtttgagaca
tcgccccatgtcatccaagcagttatgggagccctggaagggctgagggttgctattgga
ccttgccgaatgttacagtattgtttacagggtttgtttcaccctgccagaaaagtcaga
gacgtgtactggaagatctacaattccatctacattggttcacaggatgctttaatagca
cattacccacgaatctacaatgacgaaaagaacacctacattcgttatgaactcgattat
gtcttgtaa
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integrated database retrieval system
