Podarcis raffonei (Aeolian wall lizard): 128400356
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Entry
128400356 CDS
T09310
Symbol
COL6A2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf04510
Focal adhesion
praf04512
ECM-receptor interaction
praf04518
Integrin signaling
praf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128400356 (COL6A2)
04518 Integrin signaling
128400356 (COL6A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128400356 (COL6A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128400356 (COL6A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
praf04147
]
128400356 (COL6A2)
00536 Glycosaminoglycan binding proteins [BR:
praf00536
]
128400356 (COL6A2)
Exosome [BR:
praf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
128400356 (COL6A2)
Glycosaminoglycan binding proteins [BR:
praf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128400356 (COL6A2)
Hyaluronan
Extracellular matrix or blood plasma proteins
128400356 (COL6A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
128400356
NCBI-ProteinID:
XP_053218499
LinkDB
All DBs
Position
1:complement(131994529..132037351)
Genome browser
AA seq
1025 aa
AA seq
DB search
MFSEAFIAVLLCTMLAPLHAQNDDDDVAAASSCADQTDCPIRVYFVIDTSESIALQTAPL
GSIVTHMKSFIPEFITKLENELYQSQVSINWQFAGLHFSDVVKIYSEFTNSKTIYRDRLE
SVQYIGRGTFTDCAISNMTAQILANPSPGAVNYAIVITDGHVTGSPCGGMKLQAERARDA
GIRLFAVAPSHNIFEQGLREIANPPLELYRSNYAITKMDPIRKESTTEIDTNTIDRIIQV
MKHEAYGECYKMSCLEIAGPPGPKGFRGQKGAKGNMGVPGVPGLKGRQGDPGIEGPIGYP
GPKGIHGLKGEKGEFGGDGRKGAFGLFGRNGTSGQKGKLGRIGPPGCKGDPGNRGPDGYP
GGAGEQGLPGDQGIKGDPGRPGRSGPPGLVGEKGNPGPQGTNGSPGTPGTKGAKGGPGTI
GPKGEPGRRGDPGTKGGPGAAGPPGGRGDPGSEGQRGLPGEVGNKGGKGERGLPGQRGSQ
GGAGEPGKPGSRGDPGDSGVRGDPGVPGPKGDRGRPGFNYPGPRGAAGEKGEKGLPGPEG
ARGDFGLKGPPGSKGERGEPADPGPPGEPGPRGPTGEGGPEGGPGPAGDPGLTDCDVMAY
IRETCGCCDCEKRCGPLDLVFVIDSSESIGYTNFTLEKNFVINVVSRLGSIAKDPKSETG
ARVGVVQYSHEGTFEAIQLNDDRIDSLSSFKEAVKKLEWIAGGTWTPSALQFAYNTLIKE
SRRDKARVFAVVITDGRHDPRDSESNLPALCSKGVTVHAIGIGDMFNKKEEDETLSSIAC
DDDKRVQRMKLFSELVADEFIDSMEHELCPDPQIVCPELPCQTELAVAQCTQRPVDIVFL
LDGSERIGELNFQRAYRFVEDVAQRLTLARSNNDNMNARIALVQYGSENEHRVAFELTHN
LTIISDALDQIKYLDSSSNIGSGIIHAVNNIVINPRDRQRAARRNAELSFVFITDGITGS
KNLVEAVDSMKKQNVMPTVVALGSDVDMDVLLKIGLGDQAAIFREKDYASLSQPGFFDRF
IRWIC
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgttctcagaagcctttatagctgttctgctgtgtacaatgctggctcctctccatgct
caaaatgatgatgatgatgttgctgcagcttcgtcctgtgcagatcaaactgactgtccc
atcagggtatattttgtgattgacacatctgagagtattgcgctgcagactgcacctttg
gggagcatagtgacccatatgaagagcttcatccctgaattcatcacaaagctggagaat
gagctctaccagagccaagtgtccatcaactggcaatttgcaggacttcatttttcagat
gtggtgaaaatatacagcgagttcactaacagcaagacgatctaccgtgatcggttggag
agtgttcaatacattggccggggcaccttcacagattgtgctatctccaacatgacagca
cagatcctggccaatccatcccctggcgctgtcaattacgccattgtgatcactgatggc
catgtgacagggagtccctgtggagggatgaagttgcaagctgaaagagcccgcgacgca
gggatcaggctctttgcagtggcccccagccacaacatctttgagcaagggctgcgagag
attgccaaccccccgctggagctttaccgtagcaattacgccatcacaaagatggaccct
atcagaaaagagtcaaccaccgagatagataccaataccattgacaggatcatccaagtt
atgaaacacgaagcctatggagagtgctacaaaatgagctgcctagaaattgcaggccca
cctggcccaaaggggtttcggggacaaaagggtgcaaagggcaacatgggggtgccaggt
gttcctggtctaaaaggacgacagggtgacccaggaattgaaggtccaattggatatcca
ggtcccaagggtattcatggtctaaaaggcgaaaagggagaatttggaggagatggacga
aagggggcttttggcttgtttggacggaacggcacaagtgggcaaaagggcaaactgggg
cgcattggacctcctggctgtaagggagacccaggcaacaggggccctgatggttatcct
ggaggtgctggagaacaagggttgcctggggaccaagggatcaagggtgatcctggccgt
cctggtcgcagtggaccgcctgggttggttggagagaaaggaaatccgggaccacaaggc
accaatggatctcctggcactcctgggacaaagggagccaaaggtggccctggaactatt
ggacccaaaggagaacctggtcgtcgtggtgatcctggaaccaaggggggacctggagct
gctggacccccaggcgggagaggagaccctggttctgagggccagagagggctaccagga
gaagttggaaacaagggaggcaagggagagcgaggattgcctggccaacgaggtagtcaa
ggtggtgcgggagaaccaggaaagcctggctcacgaggggatcctggtgattctggtgtc
aggggcgaccccggggtgccaggtccaaagggtgacagaggaagacctggctttaactat
cccggtccaagaggagctgcgggtgagaaaggtgagaaggggcttccaggaccagagggt
gcaagaggtgactttggactaaaaggccccccaggaagcaaaggagaacgaggtgaacct
gctgatcctggcccacccggggagcctggacccagaggacctacaggcgaaggaggccct
gagggtggccctggccctgctggagatcctggcctgactgactgtgatgtgatggcatac
atcagagagacctgtggctgttgtgactgtgagaagcggtgtggccccttggacttagtc
tttgttatagacagctcagaaagtattggctacaccaatttcaccctggagaagaacttt
gtcataaacgtggtgagcagacttggttccatagccaaggatccaaaatctgagacaggg
gcccgtgttggggtggtgcagtacagccacgaagggacatttgaagccatccagctgaac
gatgaccgcattgactccctctccagtttcaaagaggcagtgaagaagctggagtggatt
gccgggggcacgtggaccccctctgcgcttcagttcgcctacaacaccctcatcaaggag
agccggagagacaaagcccgggtgtttgctgtggtgattactgacgggcgccacgatccc
cgggatagtgagtccaacttaccggctctctgcagcaagggggtcactgtccatgccatt
gggattggtgacatgttcaacaagaaggaggaagacgagaccctgagctcgattgcctgt
gatgacgacaagagagttcagagaatgaagttgttttcggagctggtggctgatgagttt
atcgacagcatggagcatgaactttgtccagatcctcagattgtctgccctgaactgccc
tgccaaacagagcttgctgttgcccagtgcacacagcgccctgtggacattgtcttcctc
ctggatggctctgaaagaattggtgaactgaacttccagagggcctaccgttttgttgaa
gatgtggcccaacgtctaaccctggccagaagtaacaatgacaatatgaatgcgcgcatt
gcccttgtgcagtacggaagtgagaacgagcatagggtggcttttgaattgacacacaat
ctcactatcatctcggatgccttagatcagatcaaatacttggactcttcttccaacatt
gggtctggcatcatccatgccgtcaacaacattgtcatcaacccaagagacaggcagaga
gcagccaggcgcaacgccgagctgtcatttgtcttcatcacagatggcattacaggcagc
aaaaacctggttgaggctgttgactccatgaagaagcagaatgtgatgcccaccgtggtg
gccttagggagcgatgtggacatggatgttctgctgaagattggtctgggggaccaggca
gccattttccgggagaaggactatgccagcctctcccagcctggcttctttgatagattc
attaggtggatctgttag
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