Podarcis raffonei (Aeolian wall lizard): 128419071
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Entry
128419071 CDS
T09310
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128419071 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
praf03019
]
128419071 (CNOT1)
Messenger RNA biogenesis [BR:
praf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128419071 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
128419071 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
128419071
NCBI-ProteinID:
XP_053255339
LinkDB
All DBs
Position
8:complement(38330324..38387976)
Genome browser
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIENPLHYQKSLKPSPHLFTQLSKVIK
LSKVQEVIFGLALLNSFNPDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIITQFGVGEVTAAQVARVLGMMART
HSGLADGIPLQSISAPGSGIWSDGRDKNDGTQSHTWNVEVLIDVLKELNPNLNFKEVTYE
LDHPGFQIRDSKGLQIVVYGVQRGLGLDVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAAGMAS
LSLGGSAVPHTQSMPGFPPNLSSAFSTPQSPAKAFPPLSTQNQNTPFSGISGLSSQLPVG
GLTTGSLGIGTGALGLPAVNNDPFVPRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFTSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKTPLAGQVSTIVTTSTTTTTVAKTTITPVGRVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDISDLKPGNLLKDKDRLKSLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQREMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDSTQPTGILAQPMKQAWATDDVAQIYDKCMAELE
QHLQSIPHTLSMNPQTQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELGERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELAKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactacagagccagccagcaggaaatacagcatattgtgaatcggcacggc
cctgaggcagacaggcatttactacgctgtctattctcgcatgtggatttcagtggcgat
ggtaaaagtagcggtaaagatttccatcagacgcagtttctgatccaggagtgtgcatca
ttgattacaaagccaaattttatttcgacgctgtcctatgctattgaaaatccattgcat
tatcaaaagagtcttaagccatcaccccatctattcactcagctgagcaaagttatcaaa
ttaagcaaggttcaagaggttatttttggccttgctttgctaaactccttcaacccagat
ctacgaggttttgctgctcagtttattaaacagaaacttcctgatcttctgcgttcatac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ttgcacctcctcctatcccatcttctttttggacagaagggagcctttggggttggacag
gaacagattgacgcttttctcaaaacattacgtagagattttccccaggaacgttgccct
gtggtgcttgcaccactcctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagcaaaaacaatgatggagagctctcttgcagacttcatgcag
gaagttggctatggcttttgtacaagtgtggaggaatgtcgcaacatcatcacacagttt
ggcgtgggagaggtcactgctgcccaggttgccagggttttgggaatgatggctcgaaca
cactcaggattggcagacggcattcctttgcagtccatctctgctcctggaagtggaatt
tggagtgatggaagagataaaaatgatggaacacagtcccatacctggaatgtggaggtt
ctgattgacgtgcttaaagagctgaacccaaatttgaacttcaaggaagtaacctatgaa
cttgaccaccctggatttcaaattcgtgatagcaaaggcttacagattgtggtgtatggt
gtccagagagggctagggctagacgtcttcccagttgatctcatatacagaccttggaaa
catgcagaaggacagctctcattcatccagcattccctcattaatccagagatcttctgt
tttgctgactacccctgtcatactgttgccactgatattttgaaagcccctcccgaggat
gacaatcgagaaattgccacatggaagagcctggacttgattgagtccctgttgcggttg
gcagaggttggccagtatgagcaagttaagcagctcttcagcttccctatcaagcactgt
ccagatatgttggtattggcattactacagatcaacacttcctggcatactttgcggcat
gaactcatctctacacttatgcccatttttcttggcaaccatcccaactctgccatcatc
ctgcattatgcatggcatgggcagggccagtctccttcaattcgccagctcatcatgcat
gctatggcagaatggtacatgcgaggggaacagtacgaccaagcaaaattatcacgtatt
ctagacgtggcccaagacttgaaggcgttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaactagacaaatgg
ctcacagataaaattcgggagcatggggagcctttcatccaagcctgtatgactttccta
aagagaaggtgcccctctatcttaggtggccttgccccagagaaagaccagcccaaaagt
gctcagcttcctccagagacactggcaactatgctggcttgcctgcaggcttgtgctgga
agtgtgtctcaagagctgtcagaaactattctaaccatggtagctaactgcagcaatgtc
atgaacaaagccaggcagccaccacctggagttatgcccaaaggacgtccaccaagtgct
agtagcctagatgccatctctcctgtacagattgatccacttgctgctgggatggcatct
ctcagcctaggtggttcagcagttccacacacacagagtatgccaggttttcctccaaac
ttgagttctgcttttagtactccgcaatcaccagcaaaagcatttccaccactttccaca
caaaaccagaatacacctttcagtgggattagcggactctcttcacagcttccagtaggt
ggtcttacaacaggtagtctgggcataggaactggggcccttggcctccctgcagtgaat
aatgacccatttgtgccaagaaaactgagtacatcaggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtatggccagaggcaaatcagcacttt
agcaaagagattgatgatgaagccaacagctattttcagcgtatttataatcacccaccg
catccaactatgtctgtagacgaggtgttagaaatgctacagaggtttaaggactccaac
attaaacgagaacgcgaagtatttaactgtatgctgaggaacttgtttgaggaatatcgg
tttttcccccagtaccccgataaagagctgcacataacagcctgcctctttggtgggata
atagagaaaggactggttacatatatggcgctgggcctggccttgcgctatgttcttgaa
gccttacgaaagccttttacatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttccctcatcacctgcaggagtacattgaatatggacagcagtctagagat
cctcctgtgaagatgcaggggtcaatcaccacccctggaagtattgcacttgcccaggcc
caggcccaggctcaggttccggcaaaaactcctcttgctggtcaagttagcactatagtc
accacctctactaccactactactgtggcaaagactacaatcactccagtgggtcgagtc
agcttcaagaaggatgtgccaccttctattaatacaaccaacattgacaccctgttagta
gccacagatcaaacagagagaattgttgaaccccctgaaaacgtgcaggagaagattgct
tttatcttcaacaacctgtcgcaatccaacatgactcagaaggttgaggaactgaaagaa
acggtgaaagaggagttcatgccttgggtttcacagtaccttgtgatgaagagagttagt
attgagccaaacttccacagcctttattcaaatttccttgacacacttaagaatccagaa
ttcaacaaaatggttctcaacgaaacctacagaaatatcaaggtgctactcacatcagat
aaagctgctgccaacttttcagacagatccttgctgaagaacctgggtcactggctgggg
atgatcacactggctaaaaacaaacccatcttgcacacggacttggatgtgaaatcctta
ctgctggaggcttatgttaagggacagcaagaacttctgtatgtcgtgccatttgttgcc
aaagttttggaatccagtgtgagaagtgtggttttccggcctccgaatccttggaccatg
gctattatgaatgtactagcagagctgcaccaggaacatgacttaaaactgaatctgaag
tttgaaatcgaagtgctctgcaagaaccttgcccttgacatcagtgacctgaaacctggg
aacctcctaaaagacaaagatcgattgaaaagtttggatgaacagctgtctgctccaaag
aaagatgtaaaacaaccagaagagcttccaccaattacgaccactactgcttctacaaca
ccagctaccagcaccacttgcacagctactgttcccccacaaccacagtacagttaccat
gacatcaatgtttactccctgggagggctagctccacacattacgctcaatccaacgatt
ccattgttccaggcccatccacagttgaagcagtgtgtgcgccaagccatagagcgtgca
gtccaagaacttgtacatcctgtggtggatcggtccattaaaattgccatgactacgtgt
gagcagatagtgagaaaggattttgcactagattcagaagagtcacgcatgcgtgtagcg
gcacatcacatgatgaggaatttgactgctggtatggctatgatcacctgtagggagcct
ttgttgatgagcatagctaccaacctgaagaacagctttgccactgcattgcgggcagcc
tcaccacagcagagggagatgatggagcaggcagcagcacagttagcccaagataactgt
gagttggcatgctgtttcattcagaagacagctgtagaaaaagcaggccctgaaatggac
aagaggctggccactgaatttgagctcagaaaacatgccaggcaagagggtcgtaggtac
tgtgatcctgtagtattgacttatcaggctgaacggatgccagaacagatcaggttgaag
gttggtggagtggacccaaagcagctagctgtttatgaagaatttgcacgcaatgttcct
ggtttcttaccaaccaatgactcaacccaacccacaggaatcctagctcagcctatgaag
caagcctgggcaacagatgatgtagcacagatctatgataaatgtatggcagaactggag
cagcaccttcagtccattcctcacaccctgtctatgaatccacagactcaagccttacga
agcctcttggaggctgttgttgtggctcgtaattctcgtgatgctattgcagcccttgga
ctgctacagaaggcagttgaaggtttgttagatgccaccagtggtgcagatgctgacctc
ctcctccgctaccgggaatgtcacttgcttgttttaaaagcactgcaggatggccgtgct
tatgggtctccatggtgcaacaagcagattacaaggtgcctgatagaatgccgagatgaa
tataaatacaatgtagaagcagtggagctactgatccgtaaccacctagttaacatgcag
cagtatgacctccacctggctcagtcaatggagaatggcttgaactacatggcagtggca
tttgcaatgcagctggtgaaaatcctcttggtggatgaaagaagtgttgctcacataaca
gaagcagatctgtttcacaccattgaaactttgatgagaattaatgctcactccagaggg
aatgcaccagaagggttgccccagctgatggaagtggtacggtccaactatgaagccatg
attgaccgtgctcatggagggccaaatttcatgatgcattctgggatctctcaggcctct
gagtatgatgatccccctggcctgagggagaaggcagaatatctcctgagggagtgggtg
aatctctaccactctgcagcagctgggcgtgacagcaccaaagcattctctgcatttgtt
ggacaggtagagcttggggaaagaaagatgcatcagcaaggaatcctgaaaaccgatgat
ttgatcacacgattcttccgtctttgcactgaaatgtgtgttgagatcagctatcgtgct
caagctgagcagcagcacaaccccgctgccaatcccaccatgatccgtgccaagtgttac
cacaacctggatgcctttgtgcgcctcattgcactgctggtgaagcactctggggaggcc
accaacacagtcaccaagatcaacttgctcaacaaggttcttgggatagttgtgggagtc
cttttgcaggatcatgatgttcgtcaaagtgaattccagcagcttccctaccaccgcatt
ttcatcatgttgctgttagaattaaatgctcctgagcatgtcctggaaaccataaacttt
cagacactcacagccttctgtaacacatttcacatcctgagacctacaaaagctccaggt
tttgtttatgcttggctagaattgatctcccatcggatatttattgcaagaatgctggca
catacaccacagcagaaggggtggcctatgtacgctcagctgttgatagatctgtttaaa
tatttggctcctttcctgaggaatgtggaacttgccaaacctatgcaaattctgtacaag
ggtactctgcgtgtgttgttggtcctgttacatgacttcccagaattcctctgtgactac
cactatggtttctgcgatgtgattcctccaaactgtattcagctaaggaatctgatattg
agtgccttcccacgtaatatgaggcttccagatccgttcactcccaaccttaaggtggac
atgttgagtgagattaatattgctccacggatactcaccaatttcactggagtgatgcca
cctcagttcaagaaggatttggattcctacctcaaaacccgttctccagtcacgttcctg
tccgacttgcgtagcaacttgcaggtatcaaatgagcctggcaatcgctacaatatccag
ctgataaatgccctggtgctgtatgtaggtactcaagctattgcacatattcacaacaaa
ggcagcactccttccatgagcaccatcacccactcggctcacatggatatcttccagaat
cttgctgttgacctggacacagaaggtcggtacctcttcctaaatgcaattgccaatcag
ttacggtacccaaacagtcatactcactatttcagctgcaccatgctttacctatttgca
gaggccaacactgaagctattcaagaacaaatcaccagagttctgctagaacgactgatt
gtaaataggcctcacccatggggtctccttattaccttcatcgagctgattaaaaaccca
gcatttaagttctggaatcacgagtttgtccattgtgctccagaaattgaaaagttgttc
cagtctgttgcgcaatgttgtatggggcaaaaacaggcacaacaagtaatggaaggaact
ggagctagttag
DBGET
integrated database retrieval system
