Pieris rapae (cabbage white): 110996562
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Entry
110996562 CDS
T05162
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110996562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prap03019
]
110996562
Messenger RNA biogenesis [BR:
prap03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110996562
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110996562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
110996562
NCBI-ProteinID:
XP_022119992
LinkDB
All DBs
Position
22:complement(5642333..5657542)
Genome browser
AA seq
2165 aa
AA seq
DB search
MEMATASDMTGTLLDNSLAEVIRELGYGFTTSVGDCKTHMLNFCAREPTVIDVARIISLM
IRYHHVQDTTVQDTPQIQNPGNFWVKYEAKTESAHVHSETWNAEVFVQTLKELASNLNWK
EVILQLDHPEFIVPDRQGLSLLFTILRLGLQSAGYPANIFPVEYLCRRWTNLEGQMSLIT
NILKHPDVFSFADYPFHPVPTDLLKSPPETDNKEVATWRCLYLVELLLFASERGYYLQVR
ELFKFPLQHCPDILLLALIQINPPITVFRQELLTTLIPIFLGNHPNSGVILQHAWHTQNL
NMKPIIMHAMADWYMRGDCDQSKLSRILDVAQDLKALSFLLNVQSFPFIIDLACLASRRE
YLKLDKWLTDKIRDHGESFVTAMVKFLQRRCPPVIGKVQEEQLPKAAQLPPESIGTLLAC
LQLCIPNVQKELQEAIYTLITNCQTMILSKARPNIAGIARQTHARVIETPFNAAGLSGQV
FTPHVDSIATFTPNMANLSLGAPANIFEMPGTLGSLVTAPGSPSRLMGAGPNSPFAMIPI
QHAANIATMGAMARMQTGPAMDKHRIPDPIHFPEIIHNVSKEIEDEANGYFQRIYNHPPH
PTLSIDEVLEMLKKFQDSPNKREREVFSCMLRNLFEEFKFFPQYPDKELHITAQLFGGMI
EKGLVPSYVSLGLALRFVLDALRKPEGSKMYYFGIAALDRFKSRLKDYHKYCEHVRAIPH
FSEFPPHLIEYIKYGLQSQEPPTKPQGAVLPAGLAAILNQTAVVSIAAPYRSVVANTVIS
KVTNCVPGGIGSRPSIANATNIDTLLKATDKHEKLISPPEPIQDKTAFIFNNLSQLNLQA
KCDELKEIITEEYFPWLAQYLVMKRASIELNFHVLYSNFLDVVKIRKVNELVTKETYRNI
RVLLRSDKSIANFSDRSLLKNLGHWLGMLTLARNVPILFLDLDLKSLLLEAYHKGQQELL
YVVPFIAKILESCAKSVAFKPPNPWSMSLMNVLAELHQEPELKLNLKFEIEVLCKNLSLD
IQDLKPSLYLKDPDKIRTIEFQLSQPKPPQPPPQAQPNVMALNQTIIQAPQIQMIPPQTP
MIPAEDISAAAPTPTNGLLNDPSLMGVIGIPEPRFNYLDVNVSSSSVFGQKISINPHIIL
FQSYPHLKQFVKPTIERSIQEWILPVVDRSIKYALKTCEQIVRKDFSLDPDEGRMRTCAH
HMMRNLTAGMAMITCREQIINTITTNLKAAFITALLSTTPQQDIIDSAAAILAAENMELA
CAFIQKTAVEKALPELDTRLLNDYEMRKIARQEGRRYYDSIVLGYQTERIPERVRLHVGG
PTETQIAVYEEFACNIPGFVPVRDAGIFMPKPLAQEQPPQITYSQVINPTQIYGTDEIGG
LISAAENFLTNVLPVPSFGVQTTNMRTLLECLIMARRNRDFASGYTLLQRTVEGLLDGHI
VQPGTNTEHVEIMNRYRDIHLRVLKLLQDARVYGHAWTTKHITSCIVECRDELKYNLEAT
DCLIRNHLVNLPQYDLALAHLMDSGNNYMAVAFAMRLVQLYLVDDRSNVYANESDLHHIT
ECLVIVSHSRNPPPEGLASLIEAIRINQDPSTYLGERPALGPTSHIHTGIMQVRNRDDDD
PHGLQETTDNLLREWRTMLLSPLTEIEIAQNFNIYVHRMNLNGILKSDDMTTRFFRIATQ
MCVENVYQLLAEERLNPQVPSKKEKFYSMCDSFIKLVSLLIKNASDAGHPAPKLDLLNKI
LGIIAGCLLHDQEERGTNFHQLPYHRMLVILLLDMNAAEPVLESMNYQVLTAFCHTFKII
RPNQAPGFGYAWLELIAHRTFISRVLAATPQQKGWGMYSILLIDLFKFLNPFLRNTELAP
PVMALYKGTLKLLLVLLHDFPEFLCDYHYGFCDEIPPNCIQMRNVILSAFPRNMRLPDPF
TPNLKVDLLAEINLPPRLVINYANLVPSSQFKKDLDAYLNARAPVTFLSELRSNMQVVNK
PGCRYNSQLMNAVVLYVGTQAIAHIRAKGQTPNMSTIAHSAHMDIFQNFTVDFDYEGRYL
FLNAIANQLRYPNSHTHYFSCCLLYLFAEANSEAVQEQITRTLLERLIVNRPHPWGLLIT
FIELVKNPIYQFWTHEFVHCAPEIEKFAAQPFNNGHSMCESNSRSSHRNIVKKPSQKYDI
CQTEV
NT seq
6498 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggctacagcgagcgatatgacaggaaccctgctagataattctctggcagag
gttattcgggaacttggatatggattcacaacatcagttggagattgcaaaactcacatg
ttaaatttttgtgcaagggaaccaaccgttatcgatgttgctagaattatctctttgatg
ataagatatcatcatgttcaagacaccacagttcaagacactccacaaatacaaaatcct
ggtaatttttgggtgaagtatgaggccaaaacagaatcggctcatgtacatagcgagacg
tggaatgcagaagtgtttgtacaaacgttaaaagaattggcctctaacttgaattggaaa
gaagttatcttgcaactggaccatccagaatttattgtgcctgataggcaaggactgagc
ttattgttcactatccttcgactaggacttcaaagcgcagggtacccagcaaacatattc
cctgtcgaatatctttgtagacgatggacaaacttggaaggccagatgagtttaatcaca
aatattttgaagcaccctgatgtgtttagctttgccgattacccattccatccagtgcct
accgatttactaaagtctccccctgaaactgataataaggaagtagcaacgtggcgatgt
ctatatttagtggaactactactatttgcctctgaacgaggttattacttacaagtacgc
gagcttttcaagtttccacttcagcattgtccagacatcttgctattggctttaatccag
attaatccaccaatcactgtatttagacaggagttattgacaactctaattccgattttc
ctaggaaatcatcccaattccggtgtaatattacagcatgcctggcatactcaaaacctg
aacatgaaacctataataatgcatgccatggcggactggtatatgcggggtgattgcgat
caatcgaaattgtcaagaatattggatgtggcacaggatctcaaggcactatcgttccta
ttaaatgtgcagtcgttcccatttatcattgacttagcttgtttggcatctcgaagagaa
tatttaaaattagataaatggctcacagataagataagggatcacggtgaatcttttgta
acagccatggtgaaatttttacaaagacgctgcccaccagtcattggaaaggtacaagag
gagcagttgccgaaagcggcacaactgccgccagaatccattggcacactgttagcctgt
ctacaactatgcatccctaacgtgcagaaggagttacaagaagcaatttatactttgatt
acaaattgtcaaacaatgattttgagtaaggccagacctaatattgcaggaatagctcga
caaacgcacgcgcgcgtaattgagactccattcaatgctgctggtttaagtggccaagtg
tttactccacatgttgattctatagcaaccttcacacctaatatggccaaccttagcctt
ggagctcctgcaaacatattcgagatgcctggcaccctcggatctttggttacggcgcct
ggatctccttcacgacttatgggtgcgggaccgaatagcccatttgctatgataccaata
caacatgccgcaaatatagctactatgggagctatggcaagaatgcagacgggccctgca
atggataaacatcgcatacctgatccaatacattttccagagattattcataatgtctca
aaagaaattgaagatgaggctaatgggtactttcaaagaatttacaaccatcctccccat
ccaacactgtcaatagacgaagtgcttgaaatgttaaagaaatttcaagattctcctaat
aaaagagaacgtgaggtattctcttgtatgctacgaaacctgtttgaagaatttaaattt
ttccctcaatatccagacaaagagcttcatataacagcacaattgtttggtgggatgata
gaaaagggtttggtaccgagttatgtatcacttggactagctctaagatttgtgctcgat
gctttaagaaaacctgaggggtcaaaaatgtactattttggtatcgccgctttggacagg
tttaaatcgcggctaaaagattatcacaaatactgcgaacatgttcgagctatacctcat
tttagtgaatttccaccacatttaatagaatatattaaatatggacttcagagccaagaa
ccaccaacaaagcctcaaggagctgtactaccggcaggtttagcagccatcctcaaccaa
acagcagttgtgtctattgctgcaccatacaggtcggttgtagcgaacacagtaatatct
aaggttaccaattgtgttcctgggggtataggaagtcggccgtccattgccaatgcaaca
aacattgataccctcttaaaagccacagataaacatgaaaaattgatttcgccaccagag
cctattcaagataaaacagcttttatatttaataatctcagccaattgaatttacaagcg
aaatgcgatgaattaaaagaaattattacagaggaatatttcccttggctcgctcagtat
ttagtaatgaagagagcatccatcgaactgaacttccatgtcctatattcaaacttcttg
gatgtggttaaaataaggaaggttaacgagttagtgaccaaggaaacttatcgtaatatc
agagtacttctacgatctgacaaaagtatagccaatttctctgaccggtctctgttaaaa
aatctcggtcattggttgggcatgctgacattagctcgtaacgtacccatactcttccta
gatcttgacttaaaatcacttcttctggaagcctatcacaaagggcagcaagaactttta
tatgtcgtaccgttcatagcgaaaatactcgaatcttgcgctaagagtgttgcttttaag
ccacccaatccctggtctatgtctctgatgaatgttcttgctgaattgcaccaagagcca
gaattaaaattaaatttaaagtttgagatagaagtgctttgtaaaaacttatcccttgac
atacaagaccttaaaccgagtttatatttgaaggatccagataaaatacgaactattgaa
ttccaactgtctcaaccgaagccgccgcagccaccgccgcaagcgcaacccaatgtgatg
gccttgaatcaaacgattattcaagctccacaaatacagatgattccacctcagacgcca
atgatacctgccgaggacatttccgcagcggctccgactcccaccaacgggttgctcaac
gatccttcattgatgggtgtgattggcattccagagccacgctttaattacctagacgtg
aatgtttcttcaagctctgtttttggtcagaagataagcatcaacccgcacataattctc
ttccaaagctaccctcacctcaaacagtttgtgaaaccgacaattgagcgatccattcag
gaatggatacttcccgttgttgatcgatcgatcaaatacgctcttaagacatgcgaacag
attgtgcggaaagatttctccttagacccagacgagggccgtatgcgtacttgtgcacat
catatgatgcgaaacttgacagcgggtatggcgatgataacatgtcgcgaacaaattatt
aacacgatcacgacaaacttgaaggctgcgtttatcacagctttgttgtcaacaacgccc
cagcaggacataattgacagcgcagcagctattcttgcagccgagaatatggagctggcc
tgtgcttttatacagaagacggccgttgaaaaggcccttccggaactcgacacgagatta
ttgaacgactacgaaatgagaaaaattgctagacaggaaggtcgcagatattatgactcg
atcgttttgggatatcaaaccgaaaggatacctgaaagagtgcgtttgcatgtcggtgga
ccgactgagacgcagatcgctgtgtatgaagagtttgcgtgtaacattcctggatttgta
ccggtgcgcgacgctgggatatttatgccgaaaccgttagcacaggaacaaccaccacag
attacatatagccaagttattaaccccacgcagatatatggaaccgatgaaataggtggc
cttatatcagcagcagagaatttcctgactaatgtgctgcctgtaccatcttttggcgtt
cagaccacaaatatgcgcacactcctcgagtgcctcattatggcaagaagaaaccgtgat
tttgcttccggttatactttattgcagaggacagtggaaggtcttctcgatggccacata
gtccagccaggtacaaatacggaacacgttgaaataatgaaccggtacagagatattcat
ctacgagtattgaagttacttcaagacgccagagtgtatggacacgcctggaccaccaaa
cacataaccagctgtatcgttgagtgtcgcgatgaacttaaatataaccttgaagctacc
gactgtcttatacggaaccatctggtgaatctgccccaatatgatcttgccttagcgcat
ttgatggatagcgggaacaattatatggccgttgcctttgcgatgcgacttgtacagctt
tacttggttgatgataggagtaatgtatatgcgaatgagtccgatttacatcatataact
gagtgtttagtaatagtctcccattcgcgtaacccaccaccggagggattagcgtcctta
atagaagcaataaggattaatcaggaccccagtacgtatcttggtgaacgacctgctttg
ggacctacttcgcatattcataccggtatcatgcaagttcgtaatcgcgatgacgatgat
ccacacgggctccaggagacaacggataatcttctgcgcgagtggcgtactatgctttta
agtccacttaccgaaattgaaatcgcacaaaactttaatatatacgtgcatcgcatgaat
ctgaatggtatacttaaatctgatgatatgacaacgagattctttagaattgccactcag
atgtgtgtggagaatgtttatcagttgctggcggaagagaggttgaatcctcaagtgcca
tcgaagaaggagaaattctactcaatgtgtgattctttcataaaacttgtctcgttattg
atcaagaatgcatctgatgctggccatcctgcgccgaaactcgatttactgaacaagatc
ctcggtatcattgctgggtgtcttctccacgatcaggaagaacgtggcactaacttccac
cagctgccatatcatagaatgcttgtgatactactattagacatgaacgcggcagaacct
gttttggagtcaatgaattatcaggtgcttaccgcgttttgccatacgtttaaaataatt
cgtcctaaccaagctccaggatttggctacgcgtggttggagctcatcgcacatagaacg
ttcataagtcgtgtgctggcagctacaccacaacagaagggctggggaatgtactccata
cttctgattgatctattcaaattcctaaatccgttcctacgcaatacagaactcgcacca
ccagtaatggcgctttacaaaggaacattaaaattattgttggtattactccacgatttt
ccagagtttctttgtgattaccactatggattttgcgatgaaataccacctaattgtatc
caaatgaggaacgtgattttgtcagctttcccgcgcaatatgcgccttccagacccgttc
acgcccaaccttaaggtcgatttactagcggagataaatttaccaccacgcttagttatc
aattacgcgaatctcgtcccgtcatcgcaattcaagaaagatttggacgcatatctaaat
gcaagggctcctgttactttcctatcagaattgagaagcaatatgcaggtggtgaataag
ccgggttgtagatacaacagccagctgatgaatgcagttgtattgtatgttggtacacag
gcgattgcccatattagggccaaaggacaaaccccaaatatgtccacgattgcgcactcg
gctcatatggatatattccagaacttcactgttgattttgactatgaaggacgatactta
ttcttgaatgcgattgcaaaccagttgcgttatccaaacagccacactcactacttcagc
tgttgtctgctatatttgttcgctgaagctaactctgaagcggttcaggaacaaattaca
aggacgttacttgagagacttattgtgaataggccccacccgtggggtctactcataacc
tttattgagttggttaagaatccaatatatcaattttggactcacgaattcgtccattgc
gccccggagattgaaaagtttgctgcccagccgtttaacaatggacattctatgtgcgaa
tcaaacagtcgctcgtcgcacagaaatatcgtgaagaaaccgtctcaaaaatatgacata
tgtcagacagaagtctga
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integrated database retrieval system
