Pieris rapae (cabbage white): 110999335
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Entry
110999335 CDS
T05162
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110999335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prap03019
]
110999335
Messenger RNA biogenesis [BR:
prap03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110999335
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110999335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
DUF7787
DUF4202
Motif
Other DBs
NCBI-GeneID:
110999335
NCBI-ProteinID:
XP_022124043
LinkDB
All DBs
Position
Z:complement(7007287..7027484)
Genome browser
AA seq
2392 aa
AA seq
DB search
MNLDSLTFSLLQINNLVANLNKKNFKQTTQELAQIVTIHGLEAENHVLRSLLSEAVKTSW
DNERTGIANTGLHASLLAQLLTSLLDHPAKSTIICRTIDNPAKALQKTLKASNTLLPRLA
RLLKLTTAQDVALSLVLRKHSSKPEIATFAKQHLKRRFLDLVQSYLDAERGYHAERAGLQ
ECSPEVLQTLLTSLTYDNLKIAAVTKELFFKRLRDDFPREVVPIVLAPLLYPDDTKKPLV
EMATASDMAGTLLDNSLAEVIRDLGYGFTSSVEDCKTHMLNFGAREPTAIDVARIISLMI
RYHATVQDTPQIQNPGNFWVNHEAKKESAHGHSETWNAEVFVQTLKELASNLNWKEVILQ
LDHPEFIVPDRQGLSLLFTILRLGLQSAGYPANIFPVEYLCRRWTNLEGQMSLITNILKH
PDVFSFADYPFHPVSIDLLKSPPETDNKEVATWRCLYLVELLLFASERGYYLQVHELFKF
PLQHCPDILLLALLQINPPITVFRQELLTTLIPIFLGNHPNSGIILQHAWHTQNPNIKPI
IMHAMADWYMRGDCDQSKLSRILDVAQDLKALSLLLNVQSFPFIIDLACLASRREYLKLD
KWLTDKIRDHGESFVTAMVKFLQRRCPPVIGKVQEEQLPKAAQLPPETIGTLLACLQLCI
PNVQQELQEAIYTLITNCQTMILSKARPNIAGIARQTHARVIETPFNPAGLSGQLFTPHV
DSIATLTPNVANLSLGAPGNTFAMPGTLGPLVTAPGSPSRLMGAGPNSPFAMIPMQHAAN
VATMGALARMQTGPAMDKHRIPDPIHFPEIIHNVSKEIEDEANGYFQRIYNHPPHPTLSI
DEVLEMLKKFQDSPNKREREVFSCMLRNLFEEYKFFPQYPDKELHITAQLFGGIIEKGLV
PSYVSLGLALRFVLDALRKPEGSKMYYFGIAALDRFKSRLKDYHKYCEHVRAIPHFSEFP
PHLIEYIEYGLQSQEPPTKPQGAVLPAGLAAILNQTAVVSMAAPYRSVVAHTSISVISKV
TNCVPGGIGSRPSIANATNIDTLLTATDKDDKLNSPPESIQDKTAFIFNNLSQLNLQAKC
DELKEIITEEYYPWLAQYLVMKRASIELNFHVLYSNFLDVVKIRKLNKLVTQETYRNIRV
LLRSDKSIANFSDRSLLKNLGHWLGMLTLARNVPILFLDLDLKSLLLEAYHKGQQELLYV
VPFIAKVLESCAKSVAFKPPNPWSMSLMNVLAELHQEPELKLNLKFEIEVLCKNLSLDIQ
DLKPSLYLKDPDKIRTIEFQLSQPKPPQPPPQAQPNVMALNQTIIQAPQIQMIPPQTPMI
PAEDISAAAPTPTNGLLNDPSLMGVMGIPEPRFNYLDVNVTSTSAFGQKISFNPHIILFQ
SYPHLKQFVKPAIERSIQEWIHPVVDRSIKYALTTCEQIVRKDFSLDADEGRMRTCAHHM
MRNLTAGMAMITCREQIINTITTNLKAAFITALLSTTPQQQDIIDSAAAILAAENMELAC
AFIQKTAVEKALPELDKRLLNDYEMRKIARQEGRRYYDPIVLGYQTERIPERVRLHVGGP
TDTQIAVYEEFACNIPGFVPVRDAAMFMPKPSAQEQLPQITYSQVINPTQIYGTDEMGGL
ISAAEIFLTNALSVPSFGVQATNMHTLLECLIMARRNRDFVSGYTLLQRTVEGLLDGHIV
QPGTNTEHVEIMTRYRDIHLRVLKLLQDARVYGHAWTTKQITSCIVECRDELKYNLEATD
CLIRNHLVNLPQYDLALAHLMDSGNNYVAVAFAMQLVQLYLVDDRNNVYANESDLYHITE
CLVRLVSHSRNPPPEGLAPLIEAIRINQDPSTYLGERSALGPTSHIHTGIMQVRNRDYDD
PPGLQEKTDNLLREWRTVLMSPLTEIEIAQNFNLYVHRMNLNGILKSDDMITRFFRIATQ
MCVENVYQLLTEERLNPPQVPSKKEKFYTMCDSFIKLVSLLIKNTADAGNPTPKLNLLNK
ILGIIAGWLLHDHEEHGINFQQLPYHRMLVILLLDMNTAEPVLESMNYQVLTAFCHTFRI
IRPSQAAAFSYAWLELIAHRSFINRVLAVTPQQKGWGMYSILLIDLFKFLDPFLRNTELA
PPVMALYKGTLKLLLVLLHDFPEFLCDYHYGFCDEIPPNCIQMRNLILSAFPRSMRLPDP
FTPNLKVDLLAEINLPPRAVINYANLIPSSQFKKDLDAYLKARAPVTFLSELRSNMQVVN
EPGRRYNSQLMNAVVLYVGTQAIAHIRTKGQTPNMSTIAHSAHMDIFQNFTVDFDYEGRY
LFLNAIANQLRYPNSHTHYFSCCLLYLFAEANSEAVQEQITRMLLERLIVNRPHPWGLLI
TFIELIKNPIYQFWTHEFVHCAPEIEKLFASVARSCIADKTGAGGGERDIVE
NT seq
7179 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactctttaacgtttagcttattacaaattaataatcttgtggctaattta
aataagaagaattttaagcagactactcaagagctagcacagattgtcaccatccatggt
ttagaagcagagaaccatgtgctaaggagtttattaagtgaagcagttaaaacttcgtgg
gataacgaacgtactggaatagctaatactggtctccatgcatccttactggcccagcta
ttgacttctcttctggatcatcccgccaagtcaacaattatttgtcgaactatagacaac
cctgctaaggcactacaaaagactcttaaagcatcaaatacattacttccgcgtcttgcc
cgattgttaaagttgacaacagctcaagatgttgctttgtcacttgtcttaagaaagcac
tcttcgaagcctgagatagcgacatttgcaaagcaacatctcaaaagacgtttcttggat
ctagttcagtcttatcttgacgcagaacgaggttatcatgcagagcgtgcaggtcttcag
gaatgcagtcctgaagtattgcagactctactaacgagcctcacgtatgacaatttgaaa
attgctgcagtaaccaaagagttgttttttaagagacttcgagacgattttcctcgggaa
gtggtgccaattgttctagctcctctattgtatcctgacgataccaaaaagcctcttgta
gaaatggctacagcgagtgatatggcaggaaccctgctagataattctctggcagaggtt
attcgtgatcttggatatggattcacatcatcagttgaagactgcaaaactcacatgcta
aattttggtgcaagggaaccaacagcaatcgatgttgctagaattatctctttgatgatt
agatatcatgccacagttcaagacactccacaaatacaaaatcctggtaatttttgggtg
aatcatgaggccaaaaaagaatcggcccatggacatagcgagacatggaatgcagaagta
tttgtacaaacattaaaagaattggcttccaacttgaattggaaagaagttatcttgcaa
ctggaccatccagaatttattgtgcctgataggcaaggtctgagcttattgttcactatc
cttcgactaggtcttcaaagtgccgggtacccagcgaacatattccctgtcgaatatctt
tgcagacgatggacaaacttggaaggccagatgagtttaatcacaaatattttgaagcac
cctgatgtgtttagctttgccgattacccatttcatccagtgtctatcgatttactaaag
tctccccctgaaactgataataaggaagtagcgacgtggcgatgtctatatttagtggaa
ttactactatttgcttctgaacgaggttattacttacaagtacacgagcttttcaagttt
ccacttcagcattgtccagacatcttgctattggctttgctccagattaatccaccaatc
actgtatttagacaggagttattgacaactctaattccgattttcctaggaaatcatcct
aattccggtataatattacaacatgcctggcatactcaaaacccgaacataaaacccata
ataatgcatgccatggcggactggtatatgcggggtgattgcgatcaatcgaaattgtca
agaatattggacgtggcacaggatctcaaggcactatcgttgctattaaatgtgcagtcg
tttccatttatcattgacttggcttgtttggcatctcgaagagaatatttaaaactagat
aaatggctcacagataagataagggatcacggtgaatcatttgtaacggccatggtgaaa
tttttacaaagacgctgcccaccagtcattggaaaggtacaagaggagcagttgccgaaa
gcggcacaactgccgccagaaaccattggcacactgttagcctgtctgcaactatgcatc
cctaacgtgcaacaggagttacaggaagcaatttatactttgattacaaattgtcaaaca
atgattttgagtaaggccagacctaatattgcaggaatagctcgacaaacgcatgcgcgc
gtaattgagactccattcaatcctgctggtttaagtggccaattgtttactccacatgtt
gattctatagcaaccctgacacctaatgtggccaaccttagcctcggagctcctggaaac
acattcgcgatgcctggcaccctcggacctttggttacggcgcctggatcaccttcacga
cttatgggcgcgggaccgaatagcccatttgctatgataccaatgcaacatgccgcaaat
gtagccaccatgggagctttagcaagaatgcagacgggccccgcaatggataaacatcgc
atacctgatccgatacattttccagagattattcataatgtctcaaaagaaattgaagat
gaggctaatggttactttcaaagaatttacaaccatcctcctcatccaacactgtcaata
gatgaagtgcttgaaatgttaaagaaattccaagattctcccaataaaagagaacgtgag
gtgttctcttgtatgctaagaaacctgtttgaagaatataaatttttccctcaatatcca
gacaaagagcttcatataacagctcagttgtttggtgggattatagaaaagggtttggta
ccgagttatgtatcactcggactagctctaagatttgtgctcgacgctttaagaaaaccc
gagggatcgaaaatgtactattttggtatcgccgctttggacagatttaaatcgcgccta
aaagattatcataaatactgcgaacatgttagggctatacctcatttcagtgaattccct
ccacatttaatagaatatatcgaatatggacttcagagccaagaaccaccaacaaagcct
caaggtgctgtacttccggccggtttagcagccatcctgaaccaaacagcagttgtgtct
atggctgcaccatacaggtcggttgtagcgcacacttcgatatcagtaatatctaaggtt
accaattgtgttcctgggggtataggaagtcggccgtccattgccaatgcaacaaacatt
gataccctcttaacagccacagataaagatgataaattgaattcgccaccagagtctatt
caagataaaacagcttttatatttaataatctcagccaattgaatttacaagcgaaatgc
gatgaattgaaagaaattattacagaggaatattacccttggctcgctcagtatttagta
atgaagagagcatctatcgaactcaacttccacgtcctatattcaaacttcttggatgtg
gttaaaatacggaagcttaacaagttagtgacccaggaaacttatcgtaatatcagagta
ctcctacgatctgacaaaagtatagccaatttctctgaccggtctctgttaaaaaatctc
ggtcattggttgggcatgctgacattagctcgtaacgtacccatacttttcctagatctt
gacttaaaatcactacttctggaagcctatcacaaagggcagcaagaacttttatatgtc
gtacctttcatagcgaaagttctcgaatcttgcgctaagagtgttgcttttaagccaccc
aatccctggtccatgtctctgatgaatgttcttgctgaattgcaccaagagccagaatta
aaattaaatttaaagttcgagatagaagtgctctgtaaaaacttatcccttgacatacaa
gaccttaaaccgagtttatatttgaaggatccagataaaatacgaactattgaattccaa
ctgtctcaaccgaagccgccgcagccaccgccgcaagcacaacccaatgtgatggccttg
aatcaaacgattattcaagctccacaaatacagatgattccacctcagacgccaatgata
cccgccgaggatatttccgcggcggccccgacgcccaccaacgggttgctcaatgatcct
tcattgatgggtgtgatgggcattccggagccacgctttaattacctagacgtgaatgtc
acttcaacctctgcttttggtcagaagataagcttcaacccgcacataattctcttccaa
agctaccctcacctcaaacagtttgtgaaaccggcaattgagcgatccattcaggaatgg
atccatcccgttgttgatcgatcgatcaaatacgctcttacgacatgcgaacagattgtg
aggaaggatttctccttagacgcagacgagggccgtatgcgcacttgtgcacatcatatg
atgcgaaacttgacagcgggtatggcgatgataacgtgtcgcgaacaaattattaacacg
atcacgacaaacttgaaggctgcgtttatcacggctctgttgtcaacaacgccccagcag
caggacataattgacagcgcagcagctattcttgcagccgagaatatggagctggcctgt
gcttttatacagaagacggccgttgaaaaggcccttccggaactcgacaagagattattg
aacgactacgaaatgaggaaaattgctagacaggaaggtcgcagatattacgatccgatc
gttttgggatatcaaaccgaaaggatacctgaaagggtgcgtttgcatgtcggtggaccg
actgacacgcagatcgctgtgtatgaagagtttgcgtgtaacattcctggatttgtaccg
gtgcgggacgctgcgatgtttatgccgaaaccgtcggcacaggaacaactaccacagatt
acatatagccaagttattaaccccacgcagatatatggaaccgatgaaatgggtggcctt
atatcggcagcagagattttcttgactaatgcgctgtctgtaccgtcttttggagttcag
gccacaaatatgcacacactcctggagtgcctcattatggcaagaagaaaccgtgatttt
gtttccggttatactttactgcagagaacagtagaaggtcttctcgatggccacatagtc
cagccaggtacaaatacggaacacgtcgaaataatgacccggtacagagatattcatcta
cgagtattaaagttacttcaagacgccagagtgtatggacacgcctggaccaccaaacag
ataaccagctgtatcgttgagtgtcgcgatgaacttaaatataacctcgaagctaccgac
tgcctcatacggaaccatctggtgaatctaccccaatatgatcttgccttagcgcatttg
atggatagcgggaacaattatgtggccgttgcctttgcgatgcaacttgtacagctttac
ttggttgatgataggaataatgtatatgcgaatgagtccgatttataccatataactgag
tgtttagtaagattagtctcccattcacgtaacccaccaccggagggattagcgccctta
atagaagcaataaggattaatcaggaccccagtacgtatcttggggaacgttctgctttg
ggacctacttcgcatatacataccggtatcatgcaagttcgtaatcgcgattacgatgat
ccacccgggctccaggagaaaacggacaatcttctgcgcgaatggcgtactgtgcttatg
agtccacttaccgaaattgaaatcgcacaaaactttaatttatacgtgcatcgcatgaat
ctgaatggaatacttaaatctgatgatatgataacgagattctttagaattgccactcag
atgtgtgtggagaatgtttatcagttgctgacggaagagaggttgaatccacctcaggtg
ccttcgaagaaggagaaattctacacaatgtgcgattcattcataaaacttgtctcgttg
ttgatcaagaatacagctgatgctggcaaccctacgccgaaactcaatttactgaacaag
atcctcggtatcattgctgggtggcttctccacgatcatgaggaacatggcattaacttc
caacagctgccatatcatagaatgcttgtgatactactattggacatgaacacggcagaa
cctgttttggaatcaatgaactatcaggtgctcaccgcattttgccatacgtttagaata
attcgaccaagccaagctgctgcatttagctacgcgtggttggagctcatcgcacataga
tcgttcattaatcgtgtgctggcagttacaccacaacaaaagggctggggaatgtactcc
atacttctcattgatctattcaaattcctagatccgttcctacgcaatacagaactcgca
ccaccagtaatggcgctttacaaaggaacattaaaattattgttggtattactccacgat
ttcccagagtttctttgcgattaccactatggattttgcgatgaaatacctcctaattgt
atccaaatgaggaacttgattttgtcagctttcccgcgcagtatgcgccttccagacccg
ttcacgcccaaccttaaggttgatttactagcggagataaatttaccaccacgcgcggtt
atcaattacgcaaatctcataccgtcctcgcaattcaagaaagatttggacgcatatcta
aaagcaagggctcctgtcactttcctatcagaattgagaagcaatatgcaggtggtgaat
gagccgggacgtagatacaacagccagctgatgaatgcagttgtattgtatgttggtaca
caggcgattgcccatattaggaccaaaggacaaaccccaaatatgtccacgattgcgcac
tcggctcatatggatatattccagaactttactgttgattttgactatgaaggacgatac
ttattcttgaatgcgattgcaaaccagttgcgttatccaaacagccacactcactatttc
agctgttgtctgctatatttgttcgctgaagctaactctgaagcggttcaggaacaaatt
acaaggatgttacttgagagacttattgtgaataggccccacccatggggtctactcata
acctttattgagttgattaagaatccaatatatcaattttggactcacgagtttgtccat
tgcgccccggagattgaaaaattgtttgcgtctgtggctcgctcgtgtattgcggacaag
acgggtgctggcgggggtgaacgggatatagttgagtag
DBGET
integrated database retrieval system
