Metapseudomonas resinovorans: PCA10_05850
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Entry
PCA10_05850 CDS
T02708
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pre
Metapseudomonas resinovorans
Pathway
pre03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PCA10_05850 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pre03021
]
PCA10_05850 (rpoB)
03400 DNA repair and recombination proteins [BR:
pre03400
]
PCA10_05850 (rpoB)
Enzymes [BR:
pre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PCA10_05850 (rpoB)
Transcription machinery [BR:
pre03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PCA10_05850 (rpoB)
DNA repair and recombination proteins [BR:
pre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PCA10_05850 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
BAN46317
UniProt:
S6ACD5
LinkDB
All DBs
Position
650676..654749
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGVSKEQFRDIGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPATVLLRALNYTTEEVLNAFYATNVFHVKGEG
LHLELVPQRLRGEIAVFDIKDPSGKVIVEQGRRITARHINQLEKAGIKELEVPLDYVLGR
TSAKAIVHPATGEIIAECNTELTTDLLVKIAKAQVVRIETLYTNDIDCGPFISDTLKIDS
TGNQLEALVEIYRMMRPGEPPTKEAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GSGVLSKEDIVDVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNQYGFLESPYRVVN
GTQVTDEIVFLSAIEEADHVIAQASATMNEKGQLVDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVNDDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVQKGD
VVARADILADGPSTDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVQAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKMQLDE
IRKDLNEEFRIVEGATFERLRSALVGQTAEGGAGVKKGTEITHEYLDGLERGQWFKLRMS
EDALNEQLEKAQAYLSDRRQMLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMMEEQRKIAELREFLHEIYNEIGGRQESLNELSDQEILDLAKNLKGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaagactttagcaagttgccggac
gtcatggatgtaccctacctcctggccatccagctggattcgtatcgcgaattcctgcag
gcgggagtcagcaaagagcagttccgtgacatcggtctgcacgcggccttcaagtctgtt
ttcccgatcatcagctattccggcaacgccgccctggaatatgtcggttatcgcctgggc
gaaccggccttcgatgtcaaggaatgcgtactgcgcggtgtgaccttcgccgtgccgctg
cgggtgaaagtccgtctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaggagcaggaagtctacatgggggaaatccccctgatgaccgagaacggtaccttc
atcatcaacggtaccgagcgcgtcatcgtttcccagctgcaccgttcgccgggtgtgttc
ttcgaccacgaccgtggcaagacccacagctcgggcaagctgctgtactccgctcgcatc
attccctaccgcggctcctggctggacttcgagttcgacccgaaggactgcgtattcgtt
cgtatcgaccgtcgccgcaaactgccggccaccgtcctgctgcgcgcgctgaactacacc
accgaagaagtgctgaatgccttctacgccaccaacgtcttccacgttaaaggcgaaggt
ctgcacctggagctggttccgcagcgtctgcgtggcgaaatcgccgtgttcgacatcaag
gatccgagcggcaaggtgattgtggagcagggccgtcgtatcaccgcccgccacatcaac
cagctggaaaaagccggtatcaaagagctggaagttccgctcgactacgtcctgggtcgc
accagcgccaaggccatcgtgcatccggctaccggcgagatcatcgccgagtgcaacacc
gagctgaccaccgacctgctggtgaagatcgccaaggcccaggttgtccgcatcgaaacc
ctgtacaccaacgacatcgactgcggtccgttcatttcggacaccctgaagatcgactcc
accggcaaccagctggaagccctggtcgagatctaccgcatgatgcgtcctggcgagccg
ccgaccaaggaagccgccgaaaccctgttcaacaacctgttcttcagcgccgagcgttac
gacctgtccgccgttggccgcatgaagttcaaccgtcgtatcggtcgcaccgagatcgaa
ggttcgggcgtgctgagcaaggaagacatcgttgacgtactgaagaccctggtcgacatc
cgtaacggcaagggcatcgtcgacgacatcgaccacctgggtaaccgtcgcgtacgttgc
gtcggcgagatggccgagaaccagttccgtgttggtctggtgcgcgtcgagcgcgcggtc
aaggaacgtctgtccatggccgaaagcgaaggcctgatgccgcaggacctgatcaacgcc
aagccggtggccgccgcgatcaaggagttcttcggttccagccagctctcccagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgccgcgtttccgcactcggccca
ggtggtctgacccgtgagcgcgcgggcttcgaggttcgtgacgtacacccgacccactac
ggccgcgtgtgcccgatcgaaacccctgaaggtccgaacatcggtctgatcaactccctg
gccacctacgcccgcaccaaccagtacggcttcctggaaagcccgtaccgcgttgtcaac
ggcacccaggtgaccgacgagatcgtcttcctctccgctatcgaagaggccgaccacgtc
atcgcccaggcatcggcaacgatgaacgagaagggccagctggtcgacgaactggtggcc
gtgcgtcacctgaacgagttcaccgtcaaggcgccggaagacgtgaccctgatggacgtg
tcgccgaagcaggtcgtttccgtcgctgcctcgctgattccgttcctcgagcacgacgac
gccaaccgtgcactcatgggttcgaacatgcagcgtcaggccgtgccgaccctgcgtgcc
gacaagcccctggttggtaccggcatggagcgcaacgtagcgcgcgactccggcgtctgc
gtcgtggcccgtcgtggcggtgtgatcgactccgtcgacgccagccgtatcgtggttcgc
gtgaatgacgacgaagtcgagactggcgaagccggtgtcgacatctacaacctgaccaaa
tacacccgttccaaccagaacacctgcatcaaccagcgtccgctggtgcagaagggtgat
gtggtcgctcgcgccgacatcctcgccgatggtccgtccaccgacatgggtgaactcgct
ctgggtcagaacatgcgcgtcgcgttcatgccctggaacggtttcaacttcgaggactcc
atctgcctgtccgagcgcgtggtgcaggaagatcgcttcaccaccatccacatccaggaa
ctgacctgtgtggcgcgtgacaccaagctcggcccagaggaaatcaccgcggacatcccg
aacgtgggtgaggctgcgctgaacaagctggacgaagccggtatcgtttacgttggtgct
gaagtacaggctggcgacatcctggtcggcaaggtcaccccgaaaggcgagacccagctg
actccggaagagaagctgctgcgcgcgatcttcggtgagaaggcgtccgacgtgaaggac
acctccctgcgcgtgcccaccggcaccaagggcaccgtcatcgacgtacaggtcttcacc
cgcgacggcgtggagcgcgacagccgtgccctgtccatcgagaagatgcagctggacgag
atccgcaaggacctgaacgaagagttccgcatcgtcgaaggcgccaccttcgagcgtctg
cgttccgccctggtcggtcagaccgctgaaggcggcgccggcgtgaagaaaggcaccgag
atcacccacgagtacctcgacggtctcgagcgcggtcagtggttcaagctgcgcatgtcc
gaagacgccctcaatgagcagctggagaaggcccaggcttacctgtccgaccgtcgccag
atgctggacgacaagttcgaagacaagaagcgcaagctgcagcaaggcgacgacctggct
ccgggcgtactgaagatcgtcaaggtctacctggctatcaagcgccgcatccagccgggc
gacaagatggccggccgccacggtaacaagggtgtggtctccgtgatcatgccggtcgaa
gacatgccgcacgatgccaatggcactccggtcgacatcgttctgaacccgctgggcgta
ccgtctcgtatgaacgtcggccagatcctcgaaacccacctgggcctcgcagccaagggc
ctgggcgagaagatcaaccgcatgatggaagagcagcgcaagatcgctgaactgcgcgag
ttcctccatgagatctacaacgagatcggtggccgtcaggaaagcctgaacgagctgagc
gaccaggaaatcctggatctggcgaagaacctgaagggcggcgtacccatggccaccccg
gtgttcgacggcgccaaggaaagcgagatcaaggccatgctgaagctcgctgacctgccg
gaaagcggtcagatgcgcctgttcgacggccgtaccggtaaccagttcgagcgtccgacc
accgtcggctacatgtacatgctcaagctgaaccacctggtcgacgacaagatgcacgca
cgttccaccggttcctacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggccagcgtttcggggagatggaggtctgggctctggaagcctacggcgccgcctac
accctgcaggaaatgctgactgtgaagtcggacgacgtgaacggtcggaccaagatgtac
aaaaacatcgtggacggcgatcaccgcatggaggccggcatgcccgagtccttcaacgtg
ttgatcaaagagatccgctcgctcggcatcgacatcgaactggaaaccgaataa
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integrated database retrieval system
