Poecilia reticulata (guppy): 103467222
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Entry
103467222 CDS
T05149
Symbol
tardbp
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103467222 (tardbp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pret03019
]
103467222 (tardbp)
Messenger RNA biogenesis [BR:
pret03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
103467222 (tardbp)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
Motif
Other DBs
NCBI-GeneID:
103467222
NCBI-ProteinID:
XP_008411634
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Position
LG7:complement(11385966..11393284)
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AA seq
396 aa
AA seq
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MSELYIRVAEDENEEPMEIPSEDDGTVLLSSVSAQFPGACGLRYRNPESQCMRGVRLVEG
VLHAPESSWGNLVYVVNYPKDNKRKMEEIDAASAVKIKRGFQKTSDLIVLGLPWKTTEQD
LKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFADYETQTKVIAQRHMIDGRWCDCKLPN
SKASPDEPMRSRKIFVGRCTEDMTTDDLRQYFMQYGEVTDVFIPKPFRAFAFVTFADDQV
AQALCGEDLIIKGVSVHISNAEPKHNNSRQMMDRGRFGAGGFSQGYGSNRGGLGSGSGGV
NFGALGLNPAMVAAAQAALQSSWGMMGMLANQQGLTTAAGTASTTRDQTYSSASTSYSSP
SSASLGWAGGTNTASSSGFSSGFGTSMESKSSSWGM
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagctatacattcgggtggctgaggatgagaacgaggagcccatggagatcccc
tcagaggacgatgggactgttctactatcctcggtatcagcccagttcccgggggcttgc
ggtcttcggtacagaaacccggagtcccagtgcatgaggggggtccggctggtggagggc
gtcctgcatgcaccagagagcagctggggaaacctggtctatgtcgtcaactatcccaaa
gataacaaaaggaagatggaggaaatcgacgcggcgtcggctgttaaaatcaaaagaggt
tttcagaaaacgtcagacctcatagtcctcgggttgccttggaaaacaacagaacaagac
ctgaaggattactttagcacctttggggaggtcattatggtacaggtgaagagagatgca
aaaactggcaactcaaaaggttttgggttcgtccgctttgcagactatgagacgcaaact
aaagtcattgctcagagacacatgattgacggacgatggtgtgactgcaaacttcccaac
tcaaaggcatctcccgacgaaccgatgcggagccgtaaaatctttgtcggccgctgcaca
gaggacatgacgacggacgatctgaggcagtacttcatgcagtacggtgaagtcactgat
gtcttcattcccaaacctttccgggcctttgcatttgtcacgtttgctgatgatcaggtc
gcccaggctctgtgcggagaggacctgatcatcaagggcgtcagcgtgcacatctccaac
gctgagcccaaacacaataacagtaggcaaatgatggatcggggtcggtttggggctggc
gggttcagtcagggctacggcagtaatcgcggggggctaggcagcggtagtggaggggtt
aactttggggctctgggccttaacccagccatggtggcagcagctcaggcggcactgcag
agcagctgggggatgatgggcatgctggctaaccagcagggcttgaccacagcagcaggc
acagcctcaaccaccagagatcagacgtatagctctgccagcaccagctacagcagcccc
agctcagccagcctgggctgggccggaggcactaacacggcctccagcagcggcttcagc
tccggctttggcacgtcaatggagtctaagtcttctagctggggaatgtag
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