Poecilia reticulata (guppy): 103472008
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Entry
103472008 CDS
T05149
Name
(RefSeq) collagen alpha-1(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret04510
Focal adhesion
pret04512
ECM-receptor interaction
pret04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103472008
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103472008
09142 Cell motility
04820 Cytoskeleton in muscle cells
103472008
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pret00535
]
103472008
Proteoglycans [BR:
pret00535
]
Extracellular matrix (ECM) proteoglycans
Others
103472008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
103472008
NCBI-ProteinID:
XP_008419572
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All DBs
Position
LG11:complement(3496665..3530374)
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AA seq
949 aa
AA seq
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MAFRCSALKREQQCHPSVSTRSLLCVALLSHLAAPALGQLDLSRLDGDTVCPPIRNGQDD
LPGFDLITQFQLDVIPLKGVRKVDGSTPLQVAYRLDREANFQIPTMLNFPRGFPDEYSFM
TTFRMIKNTVSKVWNVWQIVDEDDHKQAGLRLNGDQQALEYFLMGADGNLQTVTFPGLSV
LFNTKWHKVMIGVERDQVTLYVDCQPVDQKPIKGKGPINTQGDTLIGRLDADPDASVVFE
LQWMLIHCDPKRAQRESCNELPAAEMFANAEPDKSLQGPPGPPGPEGARGAPGESGRDGR
DGFPGTPGIPGALGSKGEKGEIGLPGQRGLPGLPGSPGPIGPLGPRGPVGERGLPGFPGP
PGPPGLASEGPAGPPGKPGTPGDEGNIGPEGPPGPRGGIGTPGPPGPPGPPGPVGPPGAN
SEGSGEACPAACPAGPQGLHGVPGMKGHKGLPGEPGKDGEPGEKGQTGETGPRGPPGRMG
DDGQRGPIGATGTPGEKGDRGAPGYNGVPGPTGPPGAPGVEGVRGRQGVPGPKGDNGAVG
PQGQAGVKGEKGEVGDPGRDGMDGLPGDNGTKGEPGAPGDVGLRGIVGIPGLPGKQGVTG
PPGEKGETGSEGPMGPVGLPGKTGGPGKDGADGKPGEKGSTGETGKQGPVGVAGPQGIQG
VKGDKGATGAKGFKGHTGYKGDQGPTGPVGPKGSQGDPGMAGDPGVKGDQGPPGVTGIKG
ERGEKGQRGATGAEGRPGQPGHEGVTGPMGARGLEGDPGIPGPPGPRGLPGPKVSDEKLR
EMCSAVVEEQLEEFMKELLRRPAALSAPGAPGPVGPPGPPGPAGAAGAAGVPGPMGPKGH
PGFFGLPGAPGTKGETGQKGDKGDKGEDGVGTKGSPGVPGVPGAPGLPGVGKDGKNGERG
ETGSPGIPGPAGPKGPSGLPGLCDPSTCLSRLPPLYMVSGKKSSSYKTH
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggccttccgctgctctgctttgaagagagagcaacaatgccatccatcagtgtcgaca
cgctccctcctgtgtgtggctcttctttcccacctcgctgcaccagctcttggacaatta
gacctgagccgactggacggggacactgtctgcccaccgataagaaacggacaagatgac
cttccaggtttcgatctgatcacccagttccagctggacgtgattcccctgaaaggtgtg
aggaaggtggacggctccactcccctccaggtggcctaccgtctcgacagggaggccaac
tttcaaattccgaccatgcttaactttcctcggggtttcccggatgagtactccttcatg
accacctttcgcatgatcaagaacacggtcagcaaggtgtggaatgtctggcaaatagtg
gacgaagacgaccacaagcaggctggcctcaggctaaacggcgaccagcaggccctggag
tacttcctgatgggcgcggatgggaatctgcagaccgtcaccttccccggcctgtccgtg
ctcttcaacaccaagtggcacaaggtgatgatcggcgtcgagcgcgaccaggtcacgctg
tatgtggactgccaacctgtggatcagaaacccatcaagggcaaaggacccatcaacaca
cagggagacacgctgattggcaggctggatgccgaccccgatgcctctgttgtgtttgag
ctccagtggatgttaatccactgcgatccaaagagagcccagagagagagctgcaatgag
cttcctgccgccgagatgtttgccaatgctgagcctgacaaatctcttcaaggtcctcca
ggtccccctggccctgagggggcccgaggggccccaggagaaagtggcagggatggaaga
gatggttttccagggactccagggattccaggtgctcttggcagcaaaggggagaagggg
gagatcggtcttccaggacagagaggcctccccggtcttccaggatctcctggtcccatc
ggtccactgggtcccagaggacctgtaggagaaagaggtctgcctggttttcccggaccc
ccaggtcctcctggcctagcaagcgaagggcccgccggtccaccagggaagccaggaacc
ccaggagatgaaggaaacatcggacctgagggcccacctggacccagagggggcataggc
actccagggcctcctgggccccctggtccaccggggcccgtgggaccgcctggtgccaac
agtgaggggagtggggaagcttgtcctgccgcctgtcccgctggacctcagggactgcat
ggagtgccagggatgaagggacacaaaggactgccaggtgagcctggaaaagacggagag
cccggagagaagggtcaaactggagaaacgggtcctcggggtccaccaggtcgcatggga
gatgatgggcaaagaggaccaatcggagccacagggacccccggagagaaaggagacaga
ggtgctcctggctacaacggcgtccccggacccaccggcccccccggagctcctggtgtg
gaaggggtgcgaggacggcagggggtgccagggccgaagggtgacaatggagctgtggga
cctcaaggacaggctggtgtcaaaggagaaaaaggagaagttggtgatcctggcagagac
gggatggatggacttcctggagataatgggaccaagggagagcctggcgcaccaggagac
gttggacttagagggattgttggcataccagggttgccagggaagcagggagtaactgga
ccccctggagaaaagggcgagactggttctgagggacccatggggccggttgggcttcca
ggaaaaactgggggtcctggaaaagatggagcggatgggaaaccaggagaaaaaggatcc
actggcgaaacaggaaaacaagggccagtgggggttgcaggtccacaaggaattcagggt
gtcaaaggagataaaggtgccactggagccaaagggttcaaaggtcatacggggtacaaa
ggtgaccagggaccaactgggccagtagggccaaaaggaagtcagggtgacccaggtatg
gcaggagaccctggtgtaaagggagatcagggccctccgggtgttactggcatcaaagga
gagcgcggggaaaaaggtcaaagaggcgccacaggagccgaagggagacccggtcagccg
ggacatgagggtgttacgggtcctatgggagctcgaggactggagggagatccgggcatt
ccaggacccccgggtcccagagggttacctggcccgaaagtgagcgatgaaaagcttcga
gaaatgtgctcagcagtggttgaagaacaattagaggagtttatgaaagagctcttgagg
aggccagcagccctcagtgctcctggtgcacccggaccagttggacctccaggaccgccg
ggaccagctggggccgcgggggcagcaggcgttccaggtccgatgggtccaaaaggtcac
ccaggcttctttggccttccaggtgcacctggaacaaaaggtgaaactgggcagaaggga
gacaaaggagacaagggagaagatggagtgggaaccaaaggaagtccgggggtgccaggt
gttccaggtgcaccgggtcttcctggcgtcggcaaagatggcaaaaacggcgagcgtggt
gaaacaggaagtccaggcatcccgggacctgccggtccgaagggaccctcaggtctgccc
ggtctgtgcgacccatctacctgtttaagcagacttccacctctctacatggtcagtgga
aagaaatcgtcctcgtacaaaacccactga
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