Candidatus Peribacter riflensis: PeribacterA2_0237
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Entry
PeribacterA2_0237 CDS
T04147
Name
(GenBank) metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
prf
Candidatus Peribacter riflensis
Pathway
prf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PeribacterA2_0237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prf03019
]
PeribacterA2_0237
Messenger RNA biogenesis [BR:
prf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PeribacterA2_0237
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
RNase_Y_N
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
LapA_dom
DivIC
KH_NusA_2nd
Motif
Other DBs
NCBI-ProteinID:
ALM09629
UniProt:
A0A0S1SR81
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All DBs
Position
complement(236884..238440)
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AA seq
518 aa
AA seq
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MDYTIVFLALLAGCLLGVLAGWFWFSKGKHVSVSLQNEIAKKEQELDRLTLRVQQSQSQI
KTAEAEARVTAKEILSEAKAQATEMEAKIEKEQGRLEEKEKSLDEKVHEVERQRANVQKQ
ESEVATLKTELTAASAKHREALESVSKLTQEQAKEQLKEELVREFSDFYAGQAKLVKEQF
KEEAEEEAKNLLAEAMQRYASEVATESTATVVQLPSDDVKGKIIGKEGRNITAFEAATGV
DIIIDDTPGAIVISGYDLARRYVAKLAMEKLIKDGRIQPARIEEVVTKMKEEVGKMMLEF
GKRAAEELSITNYPQDLLKIIGRLRFRTSYGQNVLKHSLEMANIGRMLAEEIGADAKIVA
EGCLLHDVGKALDHEVSGTHVEIGLEIARKFKVRPEVLHCIASHHNDVPIESPEAFIVAA
ADAISGARPGARRESFEAYVRRLKELEETAKSFEGVKRAFAISAGREVRVYVDTEKVDDL
QQAKLAKDIAEKIEKDLTYPGVIKVNVIRERRVEETAK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggactacaccatcgtattcctcgcactcctcgcagggtgcttgctcggcgttctcgcc
ggctggttctggttctcgaaaggaaagcacgtcagtgtctcgctccagaacgaaatcgcc
aagaaagagcaagagctcgatcggctgaccctgcgcgttcagcagtcgcagagccagatc
aaaacggcggaagccgaagcgcgtgtcacggcgaaagaaattctctccgaggccaaagcg
caggccaccgagatggaggcgaagattgaaaaggaacaaggccgcctggaggagaaagaa
aaatccctcgacgagaaggtgcacgaagtggagcgccagcgcgccaacgtgcagaagcag
gaatcggaagtcgccacgttgaagacggaactgacggcggcgagcgccaagcatcgcgag
gcgctggagagtgtgtcgaaactcacgcaggaacaggcaaaagaacaactgaaagaggaa
ctcgtccgtgaattttcagatttctacgccggccaggccaagctcgtgaaagagcagttc
aaggaggaggccgaggaggaggcgaaaaatctgctcgccgaagccatgcaacgctacgcc
tctgaggtcgccacggaatccaccgcgaccgtcgtgcaactgccttccgacgacgtgaag
ggcaagatcatcggtaaagagggacgcaacatcaccgcgttcgaggcggcaaccggcgtg
gacatcatcattgatgatacccccggcgccatcgtcatctcgggctacgatctggcccgc
cgctacgtggcgaaactggcgatggaaaaactcatcaaagacggccgcattcagccggca
cgcatcgaagaggtcgtgacaaaaatgaaggaggaggtcggcaagatgatgctggagttt
ggcaagcgtgccgcggaggaactgagcatcaccaattacccccaggatctgctcaagatt
atcgggcggcttcggtttcgcaccagctacggccagaacgtgctcaagcactctctggaa
atggcgaacatcggccgcatgctcgccgaagagatcggcgccgatgccaagatagtggcc
gagggttgtctgctccacgacgtgggtaaggccctcgatcacgaagtgtcaggcacgcac
gtggagatcggtctcgagatcgcacgaaaattcaaagtgcgccccgaggtgctgcactgc
atcgcctcccatcacaacgatgtgccgatcgagtcgcccgaggccttcatcgtcgccgcc
gcagacgccatttccggcgcccggccgggtgcgcggcgcgagtcgttcgaggcctacgtg
cgccgtctgaaggagttggaagagaccgccaagagcttcgaaggcgtcaagcgcgccttc
gcgatttcggccggccgcgaggtgcgcgtgtacgtggataccgagaaagtggatgacctg
cagcaggccaaactggccaaagacatcgccgagaagatcgaaaaggacctcacgtatccg
ggagtgatcaaggtcaacgtgatccgggagcggagagtggaagagacggcgaagtag
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