Candidatus Peribacter riflensis: PeribacterA2_1129
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Entry
PeribacterA2_1129 CDS
T04147
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
prf
Candidatus Peribacter riflensis
Pathway
prf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
prf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PeribacterA2_1129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prf03021
]
PeribacterA2_1129
03400 DNA repair and recombination proteins [BR:
prf03400
]
PeribacterA2_1129
Enzymes [BR:
prf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PeribacterA2_1129
Transcription machinery [BR:
prf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PeribacterA2_1129
DNA repair and recombination proteins [BR:
prf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PeribacterA2_1129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ALM10483
UniProt:
A0A0S1SL82
LinkDB
All DBs
Position
1188669..1192556
Genome browser
AA seq
1295 aa
AA seq
DB search
MPKKVARKTTKSKPVAKKTPPKKVAHGKAKVHAVAKQPAPVASKKPVPLVLAKKPALPPK
RTYRIHVEEKILPQIVPPIVPPAGRLPASIRNLPAHLTPKRMTDGRVFLTEEENISEILP
SLIEMQILSYRWFLTEGIKELLEEISPITDFSGRKMELRILGHAFDPAKYDPETCRRRNL
TYEAAMKGHVQLINKETGEIKEQDVFLGSIPLMTNTGTFIVGGIERVVVHQLVRSPGVFF
SKMPDYPKYNAAKIIPKRGVWLEIETDRRGIITCKIDRKRKIPITQLLRVFGYATDQKIL
DLFASVKGKDADYILTTLEKDSVRTLEDAYQSIYRKIRPGDLATPENAKQLIDSLFFDFK
KYDMGQIARYKLNRRFGFKTDNDESHRVFQVGDFVAILKELINLNNGKGVPDDIDHLANR
RIRSVGELVQNKYRVGLVRTERIIKDRMTVLDMETVTPTQLINCRPITAAMREFFASSQL
SQFMDQTNPLAELSHKRRLSAMGPGGLSRERASFDVRDVHPSHYGRICPIATPEGPNIGL
VVHLAALARVNPYGFLETPYREVKNLVPLDPDKLHGRMLGDTIREDRKVLAKEGDLIETK
ELARKIVSLCRQEGKPGVPVRPYVTGKFLYVDAEQERHLTIAQAQTKYSEMGEFLSTTIS
ARRSGEPVLADVRDITHVDVTPKQILSESTSLIPFLEHDDNTRASMGTNMQRQSVPLIRP
AAPLVGTGIEGLTARASGQAILAEEDGEVVAVDASHIAVVYRSGRKDQITLSTFVRSNQG
TCFLARPRVRVGDKVHRGSVLADGSATEGGELALGQNLLVAYLSWEGANFEDAVIISDRV
VRDGYFDSIHIESYVTDVRDTKLGSETVTRDIPNVGEAKLKDLDADGVVRIGATVHEGDI
LVGKITPKGETELTPEERLLQAIFGDKAKDVKDSSLRLPGGAGGKVVDVHVFDRAEGDEL
PTGVIKQIKVFVAQTRKIQVGDKMAGRHGNKGVVSRIVPVEDMPYLEDGTPVDVILNPLG
VTSRMNIGQILETHLGWACDKLGIKIATPALNGISVDQIEDFLKAAGLPADGKVQLFDGR
TGEPFSHKTTVGIVYMLKLLHLVEDKIHARSVGPYSLVTQQPLGGKAQHGGQRFGEMEVW
ALEAYGAAYTLQEMLTIKSDDVIGRSKAYEAIVKGEQIRRPSIPESFNVLVKELQALGLK
VELLKFKDEVRPEERTTLEEGEIEQVELRSRVEAEAEAEEILNATEKISELETPASETTE
EVVGGIEEGEAVEASGITAKEEMKESVSEEAMDDA
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagaaggttgcgcgcaaaactacaaaatccaagcccgttgcaaagaaaacccct
ccgaagaaagtagcccacggtaaggcgaaggtgcatgccgtagcgaagcagccggcgccc
gttgccagcaagaagcccgtgcctctcgtgctggccaagaaaccggccctgccgcccaag
cgcacctatcgtattcatgtggaggagaagatcctgccgcagattgtgccgccgatcgtg
ccccccgcagggcgactgccggcatccatccgcaatcttcccgcgcatctcacgccgaag
cgcatgaccgacggacgcgtgtttttgacggaggaggagaacatttcagaaattctgccg
tccttgatcgagatgcagatcttgagttaccggtggttcctgacagagggtatcaaggag
cttctcgaagagatcagcccgatcaccgatttctccggtcgcaagatggagctccggatt
ctcggtcacgccttcgatcctgccaagtacgaccccgagacatgccgccgccgcaacctc
acctacgaggcggccatgaagggtcatgtgcagctcatcaataaagagacaggtgaaatc
aaggagcaggatgtcttccttggttcgatcccgctcatgacgaatacgggcaccttcatc
gtcggaggcatcgagcgcgtggtggtgcaccagctcgttcgctcgccgggcgtcttcttc
agcaaaatgcccgactaccccaagtacaatgccgccaagatcatccccaagcgcggcgtg
tggctggagatcgagacggatcgtcgcggcatcatcacctgcaagatcgaccgcaagcgc
aagatcccgatcacgcagctgctgcgtgtgttcggctacgccacggaccagaagatcctc
gacctcttcgcttcggtaaagggcaaggatgccgactacattctcaccacgctcgagaag
gattccgtgcgcaccctcgaagacgcataccagagcatctacagaaagatccgccccggc
gatctggccacgcctgagaatgccaaacagctcatcgactcactcttcttcgacttcaag
aagtacgacatggggcagatcgcccgctacaagctcaatcggcgtttcggtttcaagacg
gacaatgacgaatcgcaccgcgtcttccaggtgggggactttgtggcgattctcaaagag
ctcatcaacctgaataacggcaagggtgtgccggatgacatcgatcacctggccaaccgt
cgcatccgttccgtaggcgaactcgtgcagaacaagtaccgcgtgggactggtccgcacg
gagcgcatcatcaaagaccgcatgaccgtgctcgacatggagacggtcacgcccacccag
ctcatcaactgccggcccattactgcggccatgcgggagttctttgcgagctcccagttg
agtcaattcatggaccagaccaatccgcttgcagagctctcgcacaagcgccgtctgtcg
gccatgggcccgggcggtctctcgcgcgagcgcgcgtccttcgacgtccgtgacgtgcac
cccagtcactacggccgcatctgtccgatcgccacgccggagggtccgaacatcggtctt
gtggtgcacttggcggcgctggcccgcgtgaatccctacgggttcctcgagacgccgtac
cgtgaagtgaagaatctggttccgctggatcccgacaagctgcatgggcgcatgctgggc
gatacgatccgcgaagaccgcaaggtgcttgccaaagagggcgatttgattgagaccaag
gagctcgcccgcaaaatcgtttctctctgccgtcaggaggggaagcccggtgtacccgtg
cgtccctacgtgacgggaaagttcctctacgtcgatgccgagcaggagcgccatctcacc
attgcgcaggcgcagaccaagtactccgagatgggcgaattcctctcgacgacgatttct
gcccgccgcagcggtgaaccggtgctcgcggatgtccgcgacatcacgcacgtcgacgtg
acccccaagcagattctgtcggagtccacatcgctcatcccgttcctggagcacgacgac
aacacgcgtgcatccatgggaacgaacatgcaacgccagtccgtaccgctcatccgtccc
gcagccccgctcgtgggcacgggtatcgagggtctgacggcgcgcgcatcggggcaggcc
attctggcggaggaggacggcgaagtggtggccgtggatgcctcgcacatcgctgtcgtc
taccggtccggtcgcaaagatcagatcacgctctccacgttcgtacgttcaaaccagggc
acgtgtttcctggcgcggccgcgcgtgcgcgtgggcgacaaggtgcaccgcgggtccgtg
ctggcggatggttccgccacagagggaggggagctggcgttgggccagaacctgctcgtt
gcctacctgtcatgggagggcgcgaacttcgaagatgccgtgatcatttcggaccgtgtg
gtgcgtgatggctacttcgactccatccacatcgagtcgtacgtgacggatgtgcgcgat
accaaattgggttccgagaccgtcacgcgcgatatcccgaatgtaggtgaggcgaagctc
aaagatctggatgccgatggtgtggtgcggatcggtgccacggtgcatgagggcgacatt
ctcgtcggcaagatcacgcccaaaggcgagaccgagctcacgccggaggaacgcctgtta
caggcaatcttcggtgacaaggccaaggacgtcaaagattcttccctccgcctgcctggc
ggagcgggtggcaaggtggtggacgtgcacgtgttcgaccgtgccgaaggtgatgagctg
cccacgggcgtcatcaagcagatcaaggtcttcgtcgcccagacccgcaagatccaggtg
ggagacaagatggccggccgtcacggcaacaaaggcgtcgtttcgcgcattgtgccggtg
gaggacatgccatacctcgaagacggcacgccggtggatgtgatcttgaaccccctcggc
gttacatcacgcatgaacatcggtcagattctcgagacgcatctggggtgggcctgcgac
aagctgggtatcaagatcgccacgcccgcactcaacggtatctctgtggatcaaatcgaa
gactttctgaaggcggcggggcttccggccgacggcaaagtgcagctcttcgatgggcgc
accggcgagcccttctcacacaagacgacggtgggcatcgtgtacatgctcaagcttctc
cacctcgttgaagacaagatccacgcccgcagcgtcggaccgtactcgctcgtgacgcag
cagccgctgggaggcaaggcgcagcacggaggccagcgcttcggagaaatggaagtgtgg
gcgctggaggcctacggagcggcatacacgctgcaggagatgctgacgatcaagtccgat
gacgtgatcggccgcagcaaggcctacgaggccatcgtgaagggcgaacagatccgtcgt
ccctccattccagagtccttcaatgtgttggtcaaagagctccaggcactgggactcaaa
gtcgaacttctgaagttcaaggatgaagtgcggcccgaagagcgcacgacgctggaagaa
ggggagatcgagcaggtggagctccgttcccgtgtcgaggccgaagccgaagccgaagag
atcctcaatgcgaccgagaagatctcggaactcgagacgcctgcgagtgaaacgaccgaa
gaagtcgtcggcggcatcgaagagggtgaggcagtcgaggcttcgggcatcacagccaag
gaggagatgaaagagtcggtgagtgaagaggcgatggatgatgcttag
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integrated database retrieval system
