Pedobacter riviphilus: H9N25_03015
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Entry
H9N25_03015 CDS
T08657
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
prk
Pedobacter riviphilus
Pathway
prk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9N25_03015 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prk03019
]
H9N25_03015 (rny)
Messenger RNA biogenesis [BR:
prk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H9N25_03015 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
DUF7299
Motif
Other DBs
NCBI-ProteinID:
QNR85468
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Position
745648..747219
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AA seq
523 aa
AA seq
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MEIVEILGYVFAVIAGIAIGVVVGRFLLRNLLKQQEVAAQNKVKKILKDAENNAEILKKN
KLLEAKEKFLQMKAEHEQEVNAKNNNINQRENTIKQKEQSVNQRMENFNKKEQELDKQKT
VLEKQTEIAIKKQEEVEVLKNQHLKQLETIAGLSAEEAKEQLVENLKQEARTQAMMQVKD
IVDEAKLTASKEAKKVVIQTIQRTATEAAIENSVSIFHIESDEIKGRVIGREGRNIRALE
AATGIEIIVDDTPEAIILSGFDPVRREIARLALHRLVTDGRIHPARIEEIVAKTKKQIED
EIVEIGERTVIDLGIHGLHPELIRMVGRMRYRSSYGQNLLHHSREVANFCATMAAELGLN
AKMAKRAGLLHDIGKVPDDNPELPHAILGMQLAEKYKEHPEICNAIGAHHDEIEMTSMIS
PIVQACDAISGARPGARREVVESYIKRLKDLEELALSYPGVEKTFAIQAGRELRVIVESE
RITDAQAELLAADISTRIQTEMTYPGQIKVTVIRETRSVAFAK
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggaaatagttgaaatattaggatacgtatttgccgtaatagcgggtatagctatcgga
gtagtggtaggaagattcctcctgcgtaacttgcttaaacagcaagaggttgctgcacag
aacaaagtgaagaagattttaaaagatgcagaaaacaatgcagaaattttaaaaaagaat
aaacttttagaagcaaaagagaagtttttgcaaatgaaagcggagcacgaacaagaagtg
aatgccaaaaacaataacattaaccaacgcgaaaataccatcaagcagaaagagcaatcg
gtaaaccagcgtatggaaaattttaataaaaaagaacaagaactcgataagcaaaaaacc
gttttagaaaaacagaccgaaattgccattaaaaagcaagaagaggtagaagtgcttaaa
aaccagcatctaaaacaattagaaaccattgctggtctttctgccgaagaagctaaagag
caattggtagaaaatctgaaacaagaggcccgcacacaagcgatgatgcaggtgaaggat
attgtggatgaggcaaaattaacggcgagtaaagaagctaaaaaagtagtcatccaaacc
attcagcgtaccgctaccgaggcagcgattgaaaattcggtttctattttccatatcgaa
agtgatgagattaaaggtcgagtaattggtagagagggtagaaatatccgtgcgctagaa
gctgcaacaggtattgagattattgtggatgatacacctgaggccattattttatcaggt
ttcgacccggtaagaagagaaatcgcccgtttggctttacaccgtttggtaacagatggc
cgtatccaccctgcacgtattgaagaaattgtagccaaaaccaaaaaacagatcgaagat
gagattgtagaaattggtgagcgtacagtaatcgatttaggtattcatggtttacatcct
gagttgatccgtatggttggccgtatgcgttaccgttcatcttacggacaaaacttgtta
catcactctcgtgaggtagctaatttctgtgcaaccatggctgccgaattaggcttaaat
gctaaaatggctaaacgtgcaggtttattacacgatataggtaaggtgcctgatgataac
cctgaattgccacatgcaattttagggatgcaattggccgaaaaatataaagagcaccct
gaaatttgtaatgctattggtgcccaccacgatgaaattgagatgacttcaatgatttct
ccaatcgtacaggcttgtgatgcgatctctggtgcgcgtccgggtgcacgtcgtgaggtg
gtagaaagttatatcaaacgccttaaagatttagaagaacttgccttatcttaccctggc
gtagaaaaaacgtttgcaattcaggctggtagagaattacgtgtgattgtagaaagtgaa
cgcattactgatgcacaggcagaacttttagctgcagatatttcaacccgtattcaaacc
gaaatgacttatcctggacagattaaggttaccgtaatcagagaaacccgttctgtagca
tttgcaaaataa
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