Protaetiibacter sp. SSC-01: H4J02_01580
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Entry
H4J02_01580 CDS
T09940
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
proa
Protaetiibacter sp. SSC-01
Pathway
proa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
proa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H4J02_01580 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
proa03021
]
H4J02_01580 (rpoB)
03400 DNA repair and recombination proteins [BR:
proa03400
]
H4J02_01580 (rpoB)
Enzymes [BR:
proa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H4J02_01580 (rpoB)
Transcription machinery [BR:
proa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H4J02_01580 (rpoB)
DNA repair and recombination proteins [BR:
proa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H4J02_01580 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QNO37761
LinkDB
All DBs
Position
339180..342656
Genome browser
AA seq
1158 aa
AA seq
DB search
MAAARSASSKNPKNGRGASRLSFAKITDTLTVPDLLALQTESFDWLVGNEAWKARIAGDP
NAPQTTGLDEIFEEISPIEDLGETMQLSFSNPELEEPKYSIEECKERGKTFAAPLYVNAE
FMNHMTGEIKTQTVFMGDFPLMTEKGTFIINGTERVVVSQLVRSPGVYFERTPEKTSDKD
VFSARVIPSRGAWLEFEIDKRDQVGVRIDRKRKQSVTVFLKALGMTSEEILAAFPGYESI
ASTLEKDAILTKEEALKDIYRKLRPGEQVAAEAARALLDNFYFNPKRYDLAKVGRYKINR
KLGLDAPLSDSVLTLDDIIATIKYLVALHAGETTLPGVREGKKVDIRLDTDDIDHFGNRR
IRAVGELIQNQVRTGLSRMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEFFGTSQLS
QFMDQNNPLAGLTHKRRLSALGPGGLSRERAGVEVRDVHPSHYGRMCPIETPEGPNIGLI
GSLATFGRINAFGFIETPYRKVVNGKVTSQIDYLTASEEDDFVVAQANAPLTSDSKFAEP
KVLVRKKGGEVELVDAADVDYMDVSPRQMVSVATSLIPFLEHDDANRALMGANMQRQAVP
LLRSESPFVGTGMEGFAAVDAGDVITAQKSGVVAEVSADVVTVQLDEGGTQEYYLRKFDR
SNQGTSYNHRVVVSAGERIEAGEVIADGPATENGELALGKNLLVAFMPWEGHNFEDAIIL
SQRLVSEDVLSSIHIEEYEVDARDTKLGKEEITRDLPNVSPELLADLDERGIIRIGAEVR
PGDILVGKVTPKGETELSAEERLLRAIFNEKSREVRDTSLKVPHGEEGTVIGVKVFDAQD
GDDELGSGVNQRVVVFIAQKRKITEGDKLAGRHGNKGVISKILPVEDMPFLADGTPVDVI
LNPLGIPGRMNFGQVLETHLGWIAKQGWKVEGNPEWAANLPEAAREAAPGTKVATPVFDG
AAEEEIEGLLDSTIPNRDGLRMIDHTGKTRLFDGRSGEPFPHPVSVGYMYILKLHHLVDD
KIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDILGR
VKVYEAIVKGENIQEPGIPESFKVLIKEMQSLCLNVEVLGADGSVLSLKDTDDEVFRAAE
ELGINISTRFESSSIDDI
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
ttggctgctgcgcgctccgcatccagtaagaaccccaagaacggtcgcggcgcatcgcga
ctctcgttcgccaagatcacggacacgctgaccgtcccggatctcctcgccctccagacc
gagagcttcgactggctcgtcggcaacgaggcgtggaaggcccgcatcgccggcgacccc
aacgccccccagaccacgggcctcgacgagatcttcgaggagatctcgcccatcgaggac
ctcggcgagacgatgcagctgtcgttctcgaaccccgagctcgaggagccgaagtactcc
atcgaggagtgcaaggagcgcggcaagaccttcgcggcgccgctctacgtcaacgccgag
ttcatgaaccacatgaccggtgagatcaagacccagacggtcttcatgggcgacttcccg
ctcatgaccgagaagggcaccttcatcatcaacggcaccgagcgtgtcgtcgtgtcgcag
ctcgtccgcagcccgggcgtctacttcgagcgcacgcccgagaagacctccgacaaggac
gtgttctcggcccgcgtcatcccgagccgcggtgcgtggctcgagttcgagatcgacaag
cgcgaccaggtgggcgtgcgcatcgaccgcaagcgcaagcagtcggtcaccgtgttcctc
aaggccctcggcatgacgagcgaggagatcctcgcggccttccccggctacgagtcgatc
gcctcgacgctcgagaaggatgccatcctcaccaaggaggaggccctcaaggacatctac
cgcaagctccgtccgggcgagcaggtcgccgccgaggccgcccgcgcgctcctcgacaac
ttctacttcaacccgaagcgctacgacctcgcgaaggtcggccggtacaagatcaaccgc
aagctcggtctcgacgcgcccctgagcgactcggtgctcacgctcgacgacatcatcgcg
acgatcaagtacctcgtcgcgctgcacgccggcgagaccacgctcccgggcgtccgcgag
ggcaagaaggtcgacatccgtctcgacaccgacgacatcgaccacttcggcaaccgccgc
atccgtgcggtcggcgagctcatccagaaccaggtgcgcaccggcctcagccgcatggag
cgcgtcgtgcgcgagcgcatgacgacgcaggacatcgaggccatcacgccgcagacgctc
atcaacgtgcgtcccgtcgtcgccgcgatcaaggagttcttcggaacctcgcagctgtcg
cagttcatggaccagaacaacccgctcgcgggtctcacccacaagcgccgcctctcggcg
ctcggcccgggtggtctgagccgtgagcgcgcgggtgtcgaggtccgcgacgtgcacccc
tcgcactacggccgcatgtgcccgatcgagacgccggaaggcccgaacatcggtctcatc
ggctcgctcgcgacgttcggccgcatcaacgcgttcggcttcatcgagacgccgtaccgc
aaggtcgtgaacggcaaggtcacctcgcagatcgactacctgacggcgtccgaggaggac
gacttcgtcgtcgcccaggcgaacgcgccgctcacgagcgacagcaagttcgccgagccc
aaggtgctcgtccgcaagaagggcggcgaggtcgagctcgtcgacgccgcggacgtggac
tacatggacgtctcgccgcgccagatggtgtcggtcgcgacctcgctcatcccgttcctc
gagcacgacgacgcgaaccgcgccctcatgggtgccaacatgcagcgccaggccgtgccg
ctcctccgctccgagtcgccgttcgtcggcaccggcatggagggcttcgcggcggtcgac
gccggcgacgtcatcacggcgcagaagtcgggcgtcgtcgccgaggtctcggcggatgtc
gtgaccgtgcagctcgacgagggcggcacgcaggagtactacctgcgcaagttcgaccgc
tcgaaccaggggacgagctacaaccaccgcgtggtcgtctcggccggtgagcgcatcgag
gccggcgaggtcatcgccgacggccccgcgacggagaacggcgagctcgcgctcggcaag
aacctcctcgtggcgttcatgccgtgggagggccacaacttcgaggacgcgatcatcctc
agccagcgcctcgtctccgaggacgtgctgagctcgatccacatcgaggagtacgaggtc
gacgcccgcgacacgaagctcggcaaggaggagatcacgcgtgacctccccaacgtgagc
cccgagctgctggccgacctcgacgagcgcggcatcatccgcatcggcgccgaggttcgc
cccggcgacatcctcgtcggcaaggtcacgccgaagggcgagaccgagctgtcggccgag
gagcgcctgctgcgcgcgatcttcaacgagaagagccgcgaggtgcgcgacacctcgctc
aaggttcctcacggtgaggagggcaccgtcatcggcgtcaaggtgttcgacgcccaggac
ggcgacgacgagctcggctcgggcgtcaaccagcgcgtcgtggtgttcatcgcgcagaag
cgcaagatcaccgagggcgacaagctcgcgggccgtcacggcaacaagggcgtcatctcg
aagatcctgccggtcgaggacatgccgttcctcgccgacggcaccccggtcgacgtcatc
ctcaacccgctcggcatccccggtcgcatgaacttcggccaggtgctcgagacccacctc
gggtggatcgcgaagcagggctggaaggtcgagggcaaccccgagtgggccgcgaacctg
cccgaggccgcccgcgaggccgcccccggcaccaaggtcgcgaccccggtgttcgacggc
gccgcggaggaggagatcgagggtctgctcgactcgacgatcccgaaccgcgacggtctc
cggatgatcgaccacacgggcaagacccggctgttcgacggccgctccggcgagccgttc
ccgcacccggtgtcggtcggctacatgtacatcctcaagctgcaccacctcgtggacgac
aagatccacgcccgcagcacgggcccctactcgatgatcacccagcagccgctcggtggt
aaggcgcagttcggcggccagcgcttcggtgagatggaggtgtgggcgctcgaggcctac
ggtgccgcgtacgcgctgcaggagctcctcacgatcaagtccgacgacatcctcggccgc
gtcaaggtgtacgaggccatcgtcaagggcgagaacatccaggagcccggcatccccgag
agcttcaaggtgctcatcaaggagatgcagtcgctgtgcctgaacgtcgaggtgctcggc
gcagacggctcggtcctcagcctcaaggacacggatgacgaggtcttccgcgccgccgag
gagctgggcatcaacatctccacccgcttcgagtcgtcgtcgatcgacgacatctga
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integrated database retrieval system
