Phodopus roborovskii (desert hamster): 127224090 Help Entry 127224090         CDS       T08852                                  Symbol Pcdh15 Name (RefSeq) protocadherin-15   KO K16500   protocadherin-15 Organism prob  Phodopus roborovskii (desert hamster) Brite KEGG Orthology (KO) [BR:prob00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    03037 Cilium and associated proteins [BR:prob03037]     127224090 (Pcdh15)    04515 Cell adhesion molecules [BR:prob04515]     127224090 (Pcdh15) Cilium and associated proteins [BR:prob03037]  Primary cilia and associated proteins   USH complex and associated proteins    127224090 (Pcdh15) Cell adhesion molecules [BR:prob04515]  Cadherins   Protocadherins    127224090 (Pcdh15) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Cadherin ECD PCDH15_12th Cadherin_FAT4_N Cadherin_CELSR2_9th PRIMA1 Motif Other DBs NCBI-GeneID:  127224090 NCBI-ProteinID:  XP_051042850 LinkDB All DBs Position Unknown AA seq 1673 aa AA seqDB search MFPQFALWKCLPHGIIIASLLAISWGQYDDDWQYEDCKLARGGPPATIVAIDEESRNGTI LVDNMLIKGTAGGPDPTIELSLKDNVDYWVLLDPIKQMLFLNSTGRVLDRDPPMNIHSIV VQVQCVNKKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNG ATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQAN DRAQNLNERRTTTTTLTVDILDGDDLGPMFLPCVLVPNTRDCRPLTYQAAIPELRTPEEL NPILVTPPIQAIDQDRNIQPPSDRPGILYSILVGTPEDYPRFFHMHPRTAQLTLLEPVNR DFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPSYQGYILESAPVGATIS ESLNLTTPLRIVALDKDIEDTKDPELHLFLNDYTSVFTVTPTGITRYLTLLQPVDREEQQ TYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYVYTDMSPGDSVIQLTAVD ADEGSNGEISYEILVGAQGDFVINRTTGLVSIAPGVELIVGRTYALTVQASDNAPPAERR HSICTVYIEVLPPNNQSPPRFPQLMYSLEVSEAMRIGAVLLNLQATDREGDPITYAIENG DPQRVFNLSETTGILTLGKALDRESTDRYILIVTASDGRPDGTSTATVNVVVTDVNDNAP VFDPYLPRNLSVLEEEANAFVGQVRATDPDAGINGQVHYSLGNFNNLFRITSNGSIYTAV KLNREVRDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVIVEENLPAG TTFLQIEAKDVDLGANVSYRIRSPEVKHLFALHPFSGELSLLRSLDYEAFPDQEASITFL VEAFDIYGTMPPGIATVTVIVKDMNDYPPVFSKRIYKGMVAPDAVKGTPITSVYAEDADP PGLPASRVRYRVDDVQFPYPASIFDVEEDSGRVITRVNLNEEPTTIFKLVVVAFDDGEPV MSSSATVRILVLHPGEIPRFTQEEYRPPPVSELATRGTVVGVISAAAINQSIVYSIVAGN EEDKFGINNVTGAIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQ DENDHPPVFQKKFYIGGVSEDARMFASVLRVKATDKDTGNYSAMAYRLIIPPIKEGKEGF VVETYTGLIKTAMLFHNMRRSYFKFQVIATDDYGKGLSGKADVLVSVVNQLDMQVIVSNV PPTLVEKKIEDLTEILDRYVQDQIPGAKVVVESIGARRHGDAFSLEDYSKCDLTVYAIDP QTNRAIDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEG ALLALAFIIILCCIPAILVVLVSYRQRQAECTKTARIQSAMPAAKPAAPVPAAPPPPPPP PGAHLYEELGESAMYEMPQYGSRRRLLPPAGQEEYGEVIGEAEEEYEEEEWARKRMIKLV VDREYESSSTGEDSAPECQRSCPHKPGVHSKVNGNIYIAQNGSVMRTRRACLADSLKVPS PVPLGRHLEKLDKFAVTHEENVPLNTLFQGPFSTEKVKRTPTLVTFAPCPMVAERSAVKP TGTRLKNTAEQESMVDSRLSRESIEFHGDNIPSDEEELWMGPWNSLHIPMTKL NT seq 5022 nt NT seq  +upstreamnt  +downstreamnt atgttcccacagtttgctctatggaagtgtttaccccatgggatcatcattgcctcactc ttggcaatcagctggggccagtacgatgatgactggcaatatgaggattgcaagctagct aggggaggcccaccagctaccatcgtggccattgatgaagagagtcggaatggtacaatt ctggtggacaacatgctgattaaggggactgctggaggaccagaccccaccatagagctc tctttgaaggacaacgtggactactgggtgctgttggaccccattaaacagatgcttttc ctgaacagtactggaagagttctggatagagacccaccaatgaatatacactccatcgtg gtgcaagtccagtgtgtcaacaagaaggtgggcacagttatctatcatgaagtgcgtatt gtggtacgagacaggaatgacaactcacccacattcaagcatgaaagctactatgccaca gtgaatgagctcactccagttggcaccacaatattcacggggttttcaggagacaatgga gctacagacatagatgatggcccgaatggacagatagagtacgtcattcagtacaaccct gaagacccgacatccaacgacacctttgaaatcccacttatgttgactggaaatgtggtg ctgaggaaacgactcaactatgaggataagactcgctactatgtcatcatccaagctaac gaccgtgcacaaaatctgaatgagaggcgaacaaccactaccaccctcacagtggacatt ctagatggagatgacctgggaccaatgtttctgccctgtgttcttgtgccaaatacccgt gactgccgtccactcacctaccaagctgccattcctgaactgaggactccggaagaactg aaccccattttggtgaccccacctatccaagccattgatcaggaccgaaacatccaacca ccatccgatcgacccggcatcctctactccatccttgtcggcacccctgaggattatccc cgattcttccacatgcatcccaggactgcccagcttactcttctggagccagtcaacaga gacttccaccagaaattcgatttggttattaaggctgagcaggacaatggccacccactt cctgcctttgctagtctacacatcgaaatactggatgaaaacaatcagagcccgtatttt acaatgcccagctaccaagggtacatcctggaatctgccccagtgggagccaccatttct gagagcctaaacctaaccactcctctgagaattgtagctctggacaaagacatagaagac acaaaagatccagaactccacctttttctgaatgattatacctcggtcttcactgtcaca cccaccggcatcacccgctaccttaccctgcttcagcctgtggacagggaggaacagcaa acgtatacctttctgataacagcatttgatggtgtacaagaaagtgaaccagttgtggtc aatatccgagtgatggacgcaaatgataacacaccaacttttcccgaaatctcctatgat gtatacgtttacacagatatgagtcctggggacagtgtcattcagctgactgcagtagat gctgatgaaggctcgaatggggagatctcctatgaaatactagtgggagcccaaggagac ttcgtcatcaacaggaccacggggctggtgagcattgcaccgggagtggagctcatcgtg ggacgaacatatgcacttacagtgcaagcctcagacaacgccccacctgcagagagaagg cattctatctgcacggtgtacatcgaggtgctcccccccaacaaccagagtcctccccgc ttcccacagctgatgtacagtctggaagtcagtgaagccatgaggattggtgccgtttta ttaaacctacaggcaactgatcgagagggagacccaatcacatatgccatcgagaatgga gaccctcagcgagtttttaatctttcagaaaccacggggattctcactctagggaaggcg ttagacagggagagcacggaccgctacatcctaatcgtcacagcctcagatggcaggcct gatgggacctcaactgccactgtgaacgttgtggtgacagacgtcaatgacaatgctcct gtgttcgatccctatctgcccaggaatctctctgtgctggaggaagaggccaatgccttc gtgggtcaagtcagggcaacagatccagatgctggaataaatggccaagtacattacagc ctggggaatttcaacaacctcttccgcatcacatccaatgggagcatttacacagctgtg aagctgaacagggaagtcagggaccactatgaactggttgttgtagcaacagatggcgcg gtgcaccctcggcattcaactctgacactgtacatcaaggtgttggacattgatgataac agtcctgtttttaccaattcaacatacactgtcattgttgaagagaatctgccagctggg accaccttccttcaaatagaggccaaggatgttgatcttggagcaaacgtgtcataccgg atcagaagccctgaagtgaagcacctgtttgcacttcatccattcagtggagaactgtcc cttttgaggagtttggattatgaggcctttcccgaccaggaagcaagcataacattcttg gtggaggcctttgatatttatgggacaatgccgcctggtatagcaacagtcacggtaatt gtgaaggacatgaatgactaccctccagtatttagcaaacgcatctacaaggggatggtg gctccagatgctgtcaagggaacaccaatcacctctgtttatgctgaagatgcagatcct cctggtttgcctgcaagtcgggtgaggtatagagtagatgatgtgcagtttccatatcct gccagtatttttgatgtagaggaagattctggaagagtaataactcgtgtcaatcttaat gaagagcctacaacaatttttaagctggtggttgtggcatttgatgatggcgagcctgtg atgtccagcagtgctaccgtgagaattctcgtcttacatcctggagagatcccacgtttc acccaagaggaatatagacctcctcctgtaagtgagctcgccaccagagggactgtagtt ggtgtcatttctgctgctgctatcaatcagagcatcgtgtactccattgtggcaggaaat gaggaagataaatttggaatcaacaatgtcacaggtgccatctatgtgaatgcaccattg gattacgagacaaggaccagctatgtgctccgggtgcaggcagattctctggaagtagtc cttgccaatctccgagttccttcaaaaagcaatacagctaaagtgtacattgagattcag gatgaaaatgatcaccccccagtgtttcagaagaagttctacattggcggtgtatctgaa gatgcaaggatgtttgcatctgtgctcagagtgaaggctacagacaaggacacaggaaac tatagtgccatggcctacaggctcatcatacctcccattaaagagggcaaagaggggttt gtggtggaaacatacacaggactcatcaagacagccatgctcttccacaatatgaggaga tcctacttcaagtttcaagtgatcgcaactgatgactatgggaaggggttgagcgggaaa gctgatgtactggtatcggtggtcaatcaactggatatgcaggtcattgtctccaatgta ccacccacgttagtggagaagaagatagaagatctcacagagattctggatcgctatgtt caggatcaaattcctggtgccaaggttgtggtagagtccattggtgcccgtcgccatgga gatgccttctccctagaagactatagcaagtgtgacctgactgtctatgccattgacccc cagaccaacagagccatcgacagaaatgaactttttaaattcctggatggcaaactgctc gatatcaataaagactttcaaccttattacggggaaggaggacgcattctggagatccgg actcctgaggcagtgacgagcatcaagaagcgaggagaaagcttagggtacacggaaggg gccttgctggccttggccttcatcatcatcctttgctgcatcccagccatcttggtggtc ctagtgagctaccgacaacgccaggctgagtgtaccaagactgcaagaatccagtctgcc atgcctgcagccaagcctgcagctcctgtacctgctgcacccccaccgccaccaccgcca cctggggcacatctctatgaggagctgggagaaagtgccatgtatgaaatgcctcagtat ggaagtcgccgccgactgctcccacctgctggacaagaggagtacggtgaagtgataggt gaagctgaagaggaatatgaagaggaagagtgggcaagaaaaagaatgatcaagttagta gtcgatcgagagtatgaaagcagctccactggggaagacagtgcccctgagtgtcagaga agctgtccacacaagcccggtgtccacagcaaagtcaacggcaacatctacattgcacag aacggttctgtgatgagaacacgccgtgcctgccttgccgatagtttgaaggtaccctcc cctgtaccgctggggaggcatttggagaagttagacaagtttgcagtgacacatgaagag aatgtgcccctgaacacgctgttccaggggcccttttctacagagaaagtgaaaagaaca ccaaccctggtcacatttgccccatgccccatggtggccgagcgctcagcagtgaagcca acagggactaggctgaaaaacacagccgagcaggagtccatggtagacagtaggctctcc agagagtcgatagaattccacggtgacaatataccatcagatgaggaggagctctggatg ggcccatggaacagcctccatataccaatgacaaaactctga

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