Phodopus roborovskii (desert hamster): 127234865
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Entry
127234865 CDS
T08852
Symbol
Cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127234865 (Cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prob03019
]
127234865 (Cnot1)
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127234865 (Cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127234865 (Cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
127234865
NCBI-ProteinID:
XP_051057865
LinkDB
All DBs
Position
Unknown
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSEGTQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRPWKHAEGQLSFIQHSLINPEVFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPAETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGGLGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVNTMVTTSTTTTVAKTVTVTKPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDIKQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgtctattttcacatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgattcaggagtgtgcctcg
ctgattacaaagccaaattttatctcgacattgtcctatgccattgataatccattgcac
taccagaagagtttaaagcctgcaccccatttatttgcccagctgagtaaagttctcaag
ttaagtaaagtacaagaggtaatttttggtcttgcccttttgaactcttctagctcagat
ctcaggggttttgctgcccagtttatcaaacagaagcttccagatcttctgcgttcttac
atagacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacatctcctactctcccatctcctttttgggcagaagggagcctttggagttggacag
gaacagatagacgcttttcttaagacactgcgcagagattttccccaagagcgttgtcct
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacaggatcttg
cctgattctggaggggtagctaaaaccatgatggagagctctctggctgatttcatgcaa
gaagtaggctatggcttttgtgcaagtattgaagaatgtcgaaatataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggttgccagggttttgggaatgatggctcgaact
cattcaggattaacagatggtattccattacagagcatctctgctcctggcagtgggatc
tggagtgatggaaaagataaaagtgaaggcacacaggcacacacatggaatgtagaggtt
ttgattgatgttcttaaagaactgaacccgagtttaaatttcaaggaagtaacttatgaa
ctggaccatcctggatttcaaattcgtgacagcaaaggacttcacaatgtggtttatggt
attcagaggggcctgggcatggaagtgtttccagtggattttatatataggccttggaaa
catgcagaaggccagctttccttcatccagcattccctgataaacccagaggtcttctgc
tttgccgactacccctgtcatactgttgccactgacattttgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaaaagcttggatttgattgaatctctgctgaggctt
gcagaggttgggcagtatgaacaagtgaaacaactcttcagcttccctattaaacactgc
ccagacatgttggtattggccttactacaaatcaacacctcctggcacaccttacgccat
gaactcatctctactttgatgccaattttccttggaaaccatcctaactctgccattatt
ttgcactatgcatggcatgggcagggacagtctccatcaattcgccaacttataatgcat
gcaatggcagaatggtacatgagaggagaacagtatgatcaggccaaattgtctcgaata
cttgatgtggcccaggacttgaaggccttgtcaatgctgctaaatggcactccatttgcc
tttgttattgaccttgctgcacttgcttcacggcgtgaatacctcaaacttgacaagtgg
ctaacagataaaataagagaacatggggagccttttatacaagcatgcatgactttttta
aagagaaggtgcccttctattttgggtggacttgccccagagaaagatcagcccaaaagt
gctcaacttcctgctgaaacgctagcaacaatgttggcttgtctacaggcttgtgcaggg
agtgtttctcaggagttatcagagaccatcctcaccatggtagccaattgcagtaatgtc
atgaataaggccagacaaccaccacctggagttatgccaaaaggtcgccctcctagtgct
agcagcttagatgccatttctcctgttcagattgaccctcttgctggaatggcatctctt
agtataggtggttcagctgcccctcacacccagagtatgcagggtttccctccaaatttg
ggttctgcattcagtacccctcaatcaccagcaaaagcatttccacctctatccacccca
aatcaaacaacggcattcagtggtattggaggactttcatcacaacttccagtaggtggt
cttggcacaggaagcttgactggtataggaactgggggccttggacttcctgcagtgaac
aatgacccttttgtacagaggaaactgggcacctctggactcaaccagcctacattccag
cagagtaagatgaaaccttctgatttgtctcaggtgtggccagaggccaatcagcacttc
agtaaagagatagatgatgaagcaaacagctatttccagcgaatatataatcacccacca
catccaaccatgtctgttgatgaggtactagaaatgctacagagatttaaagactctact
ataaaaagggagagagaagtatttaactgtatgctgaggaacttgtttgaagaatatcgt
tttttcccccagtaccctgataaagaattacatataacagcctgcctgtttggtggcata
attgaaaaaggactggtcacttacatggcattgggtctggccctgcgatatgttcttgaa
gccttacggaagccttttggatcaaaaatgtattattttggtattgctgcattagataga
tttaaaaatagattgaaggactatcctcagtattgtcagcacttggcttctataagtcac
tttatgcagtttccacatcatttgcaggagtacatcgagtatggacagcaatctcgagat
cctcctgtgaaaatgcagggctctatcacaacccctggaagtattgcactggctcaggcc
caggctcaggcccaggttccagcaaaagctcctcttgcgggtcaggttaacacaatggta
accacctcaacaaccactactgttgctaaaacggttacagtcaccaagccaacgggagtc
agctttaagaaagatgtgccaccttctataaacacaacaaatatagatacattgcttgtg
gccacagatcaaactgagaggattgtggagcccccagaaaatatccaagagaaaattgct
tttatcttcaacaatctctcacagtcaaacatgacccagaaggtggaagagcttaaagaa
accgtgaaggaagagtttatgccttgggtttcccagtatctagttatgaaaagagtcagt
attgagccaaactttcatagtctgtattcaaactttcttgacacattgaagaatcctgaa
tttaacaagatggttctgaatgagacctacagaaacattaaagtgctgctgacctctgat
aaagctgcggccaatttctcagatcgttctttgctgaagaacttgggacattggctagga
atgatcacattagctaaaaataaacccatcttgcacacggacttggatgtgaaatctttg
ctgctagaggcttacgttaaaggacagcaagagctgctttatgtagtgccctttgttgcc
aaagttctggagtccagcatccgtagtctggtttttagaccaccaaacccctggacaatg
gcaattatgaatgtattggctgaattgcaccaggagcatgacttaaagttaaacttgaag
tttgagattgaagtgctctgtaagaaccttgcattagacatcaatgagctcaaacctgga
aacctattgaaagataaagatcgcctgaagaacttagatgaacaactctctgctccaaag
aaagacatcaaacagccagaagagcttcctgccataacaacgacaacaacttctacaaca
ccagctaccagtactacgtgtacagccacagttccaccacagccacagtacagctaccac
gacatcaatgtctattctcttgcaggcctggcaccgcacattactctaaaccctacaatc
cctttgttccaggctcatccacagttgaagcagtgtgtgaggcaagccattgaaagggct
gtccaggagctagtccatcctgtggtagatcggtcaattaagattgctatgactacttgt
gaacagatagttagaaaggattttgccctggattctgaggaatccagaatgcgaatagca
gctcatcacatgatgcgcaacttgacggctggaatggctatgattacttgcagggagcct
ttactgatgagcatatctaccaacctaaaaaacagttttgcctcagcccttcgtactgca
tccccacaacaaagggaaatgatggaccaggctgctgctcaattagctcaggacaattgt
gaattagcttgttgttttattcagaaaactgcagtggagaaagcaggccctgagatggac
aagagattggcaactgaatttgagctgaggaaacatgcccggcaagaaggacgaagatac
tgtgaccctgttgtattaacctaccaagctgaacggatgccagagcaaatcaggctgaaa
gttggcggtgtcgacccaaagcagctagccgtttatgaagaatttgcacgaaatgttcct
ggcttcttacctacaaacgacttaagccagccaacaggatttttagctcagcccatgaag
caagcttgggcaacagatgatgtagctcagatttatgataagtgtattacagaactggag
caacacctacatgctattccaccaactttggccatgaatcctcaagcccaagctctccga
agtcttttggaggttgtagtgttgtctcggaattctcgagatgcgatagctgctcttgga
ttactacaaaaggctgtagaaggtttattagatgccacaagtggtgctgatgctgaccta
ttgctgcgatacagggaatgccacctcttggtactaaaagctttgcaggatggcagagca
tatggatccccatggtgcaacaaacagatcacaaggtgcctaattgagtgtcgagatgaa
tataaatataatgtagaggctgtggagttgttaattcgaaatcatttggttaacatgcag
caatatgatcttcatctagctcagtcaatggagaatggcttaaactacatggccgtggca
tttgctatgcaattggtaaaaattctgctggtggatgaaaggagtgttgcccatattact
gaggcagacctattccataccattgaaaccctcatgaggattaatgctcattccagaggc
aatgctccggaaggattgccccagttgatggaagtagtgcgatccaactatgaagcaatg
attgatcgtgctcatggaggccctaactttatgatgcattctgggatctctcaagcctca
gaatatgatgaccctccaggcctgagggagaaggcagagtatcttctgagggaatgggtg
aatctataccattcagcagcagctggccgtgacagtaccaaagcgttctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccagcaaggaatacttaagactgatgac
ctaataacaaggttttttcgtctttgcactgaaatgtgtgttgaaatcagttatcgtgct
caagcggagcagcagcacaatcctgctgccaatcccaccatgatacgagccaagtgctat
cacaacctggatgcctttgtccgactcattgcactgttagtgaagcactctggggaggcc
accaacactgtcaccaagatcaatctgctgaataaggttcttggtatagtggtgggagtt
ctcctccaggatcatgatgttcggcagagtgaatttcagcagcttccctaccataggatt
tttatcatgctgctgttggagctcaatgcacctgagcatgtgttagaaaccattaatttc
cagactcttacagctttctgcaatacattccacatcttaaggcctaccaaagcccctggc
tttgtatatgcctggcttgaattgatctcccatcggatctttattgcaagaatgctggca
catacgccacagcagaaggggtggcctatgtatgcacagctattgattgatttattcaaa
tatttagcgcctttccttagaaacgtggaactcactaaacctatgcaaatactctacaag
ggtactctaagagtgctgctagttcttttgcatgatttcccagagttcctttgtgattac
cattatgggttctgtgatgtgatccctcctaattgtatccagttaagaaatttgatcctg
agtgccttcccaagaaatatgaggctcccagacccattcactcctaatttgaaggtggac
atgttgagtgaaattaacattgcacctcggatcctcaccaatttcactggagtgatgcca
cctcagttcaaaaaagatttggattcctatcttaaaactcgatcccctgtcacttttctg
tcggatctgcgcagtaatctacaggtatctaacgagcctggcaatcgctacaacctccag
cttatcaacgcactggtgctctatgtagggactcaggccatcgcacacatccacaacaag
ggcagcacaccttcaatgagcaccatcacccactcagcacacatggacatcttccagaac
ctggctgtggacttggacaccgagggccggtatctcttcttgaatgcaattgcaaaccag
ctgcggtacccaaacagccacactcactatttcagctgcaccatgctgtacctttttgct
gaggcgaacactgaggcaatccaggaacagatcacaagggttctcttggaacggttgatt
gtaaataggccgcatccttggggtcttcttatcaccttcattgagctgattaaaaaccca
gcatttaagttctggaaccatgagtttgtacactgtgccccagagattgaaaagttattc
cagtctgttgcacagtgctgcatgggacagaagcaggctcagcaagtgatggaagggacc
ggtgccagttag
DBGET
integrated database retrieval system
