Prodigiosinella aquatilis: PCO85_21165
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Entry
PCO85_21165 CDS
T09220
Name
(GenBank) polysaccharide lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
prod
Prodigiosinella aquatilis
Pathway
prod00040
Pentose and glucuronate interconversions
prod01100
Metabolic pathways
prod02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
prod00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
PCO85_21165
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PCO85_21165
Enzymes [BR:
prod01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
PCO85_21165
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
WJV56165
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Position
4534204..4535340
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AA seq
378 aa
AA seq
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MKALLKPITAGLLLALCQPVFAASTATGGYATTAGGNVTGAVSKTASSMQDIIDIIAAAR
YDSAGKKVKTGAYPLIITYTGNEDSLINAAAANICAQSAKDARGVEIKEFTKGITIIGAN
GSSANFGIWITKSSDVVVQNMRIGYLPGGASDGDMIRIDRSPNVWIDHNELFAANHECDG
SKDGDTTFESAVDIKKDSTYVTVSYNYIHGVKKVGLAGFSSSDTAKRNITYHHNIYNDVN
SRLPLQRGGLVHAYNNLYTDVTSSGLNVRQNGNALIESNWFENTVNPVTSRYDGSNFGKW
ELRNNNITKPADFTTYNITWTADTKPYVNADSWTTTGAYPSSIPYSYSPVSAQCVKNKLA
NYAGVSKNLATLTSSACN
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattactcaaacctataactgcggggctgttgttggcattatgccaacccgtc
tttgccgcaagtacagcaaccggtggttatgccaccaccgctggcggtaacgttaccggt
gcagtcagtaaaacagcatcatccatgcaagatattatcgatatcattgctgctgcccga
tacgactccgctggcaagaaagtcaaaaccggtgcctatccgctgatcatcacctacacc
ggcaatgaagactcgctgatcaatgctgctgccgccaacatttgcgcccagtcagcaaaa
gatgcccgcggagtggaaatcaaagagttcaccaaaggcatcactatcatcggtgccaat
ggttcttccgccaacttcgggatctggattacaaaatcctccgacgtggtggtacagaac
atgcgtatcggttatctgccaggcggggccagtgacggcgatatgatccgcattgataga
tcccctaatgtgtggattgaccataacgaactgtttgctgccaatcatgaatgtgatggc
agtaaagacggtgatacaacctttgaatcggctgtggatatcaaaaaagactcaacctac
gttaccgtgtcttacaactacatccatggtgttaagaaagtgggtctggcaggattcagc
tcgtcagatacggcaaagcgcaacatcacttatcaccacaatatctacaacgacgtcaac
tcccgactgccactacaacgtggtggtctggtgcatgcctacaacaacctgtataccgat
gtcaccagttcgggtctgaacgtgcgtcaaaatggtaatgcgctgatcgagagcaactgg
tttgaaaacacggtaaacccggtaacgtcccgttatgatggttccaatttcggcaagtgg
gaattgcgtaacaacaacattaccaaacctgccgacttcactacctacaacattacctgg
actgccgataccaagccttatgtaaacgcagacagctggaccaccaccggggcctacccg
tccagcattccttacagctacagcccggtcagtgcccagtgcgtgaaaaacaaactggct
aactatgctggtgtcagcaagaacctggcaaccttgaccagttcagcctgtaactaa
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