Proteiniborus sp. MB09-C3: QO263_05390
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Entry
QO263_05390 CDS
T09105
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
prom
Proteiniborus sp. MB09-C3
Pathway
prom03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
prom00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QO263_05390 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prom03021
]
QO263_05390 (rpoB)
03400 DNA repair and recombination proteins [BR:
prom03400
]
QO263_05390 (rpoB)
Enzymes [BR:
prom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QO263_05390 (rpoB)
Transcription machinery [BR:
prom03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QO263_05390 (rpoB)
DNA repair and recombination proteins [BR:
prom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QO263_05390 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5887
Motif
Other DBs
NCBI-ProteinID:
WIV13143
LinkDB
All DBs
Position
1144585..1148295
Genome browser
AA seq
1236 aa
AA seq
DB search
MVHPVSYGKRVRMSYSRIDEVLELPDLIEVQKRSYDWFITEGLKEVFEDISPIQDYTGNL
ILEFVDYSIGDEAKYEEEESKERDVNFAAPLKVKVRLINKETGEVKEQEVFMGDFPLMTE
KGTFIINGAERVIVSQLVRSPGVYFAEDIDKTGKRLYSSTVIPNRGAWLEYESDSNDVVY
VRVDRTRKLPLTILLRALGYGSNAEILELLGETEQVLKTLEKDSTKTHDEGLLEIYKRLR
PGEPPTVDSARSLINTLFFDPKRYDLAKVGRYKFNKKLSLYNRIANRRAANTIVDENTGE
ILAEKNEKISRKKAIEIENAGINVVDVLTDDNKTVRVMGNHFVNIKAFNLPFSVEDIGLK
EKVYYPVMKELIEKHGKTEELKEAIKERIRELSPKHIINSDIIASVNYEFNLFFGIGNTD
DIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDIDVVTPQALINIRPVAAAIK
EFFGSSQLSQFMDQTNPLAELTHKRRMSALGPGGLSRDRAGFEVRDVHHSHYGRMCPIET
PEGPNIGLITSLTTYARINDYGFIEAPYRRVDKEAGVVTNEIDYLTADVEDEFIIAQSNE
PLDAEGKFVNKRALARAKYGSIEVVPVDEVDYMDVSPKQIVAVATAMIPFLENDDANRAL
MGANMQRQAVPLLKTEAPIIGTGMEYRAAKDSGVVSVAKNAGVVLRVATDEILIRRDEDG
QIDKYKLLKFKRSNQGTCINQRPIVRKHERVKKGQVIADGPSTDQGEIALGKNLLIGFMT
WEGYNYEDAILLNEKVVREDILTSVHIEEYESEARDTKLGPEEITRDIPNVGEDSLKDLD
ERGIIRIGAEVEANDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGETG
IIVDVKVFTRENGDELPPGVNQLVRVYIATKRKINVGDKMCGRHGNKGVVSRILPEEDMP
FLPDGTPLEVVLNPLGVPSRMNIGQVLEVHLGLAAKKAGWHVATPVFDGANENDIWDALK
DVGYPESGKINLRDGRSGKAFDNPVTVGYMYMLKLHHLVDDKIHARSTGPYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGASHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGIP
ESFKVLIKELQSLALDVKVITDDKEIEIKESVDDEIGDLNIGFDVEDKDSEFESEYYNDY
DETNVENVEEDLESEESDDDKFIFEDDELFDEDFDD
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atggtgcatcctgtttcgtatggaaaacgggttcgtatgagctattctaggattgatgag
gttctagaactaccagatttaattgaggtacagaaaaggtcctatgattggtttattact
gaaggacttaaagaagtattcgaagatatttctccaatccaagattacacaggaaatcta
attttagagtttgttgattatagtattggtgatgaagcaaaatatgaagaagaagagtct
aaagaaagagatgttaattttgctgcaccactaaaagttaaggttagactaatcaataag
gaaacgggagaggttaaagaacaagaagtgtttatgggagatttccctttaatgacagaa
aagggaaccttcataatcaatggagcagagagggtaatagtaagccagttggttagatca
cctggagtttattttgctgaagacatagataagacaggtaaaagactgtattcttccact
gtaatacctaatagaggtgcttggttagaatacgaaagcgactcaaatgatgtagtatat
gttagagtagatagaactagaaaacttccccttactattttacttagggcattaggatat
ggttctaatgcagaaattttagaacttttaggtgaaactgaacaggttttaaaaaccctt
gaaaaggatagtacaaaaacacatgatgaaggattacttgaaatatataaaaggcttaga
ccaggcgagccgccaacagtagatagtgctagatcacttattaatacactattttttgac
ccgaaaagatatgatttagctaaagttggtagatataaatttaataaaaagctatctctt
tacaatagaatcgcaaatagaagagccgctaacacgatagttgatgaaaatacaggagaa
atcttagcagaaaaaaatgaaaagatttctaggaaaaaggctattgaaatagagaatgca
ggtataaatgttgtagatgtattaactgatgataacaagactgtaagagttatgggtaat
catttcgtaaacattaaagcatttaatctgcctttttctgttgaggatattggactaaaa
gagaaagtatattatccagtgatgaaggaattaatagaaaagcacggaaaaaccgaggaa
ctaaaagaagctataaaagaaagaatcagagagctatctccaaagcatataataaattca
gatataatagcatcagttaattatgaattcaatctattttttggcattggaaatactgat
gatatagatcaccttggaaacaggcgacttcgttctgtaggagagcttttgcagaaccaa
tttagaataggtttatcaaggatggaaagagtagtcagagaaagaatgactattcaagat
atagatgtagttacaccacaggctttaattaacatcagaccagttgccgcagctataaag
gaattctttggtagcagccagttatcacagttcatggatcaaacaaacccattagcagag
ctcacacataaacgaagaatgtcagcattaggcccgggaggacttagtagagatagagcc
ggctttgaagtaagagacgttcatcactcacactacggaagaatgtgtcctatagaaaca
cctgaaggaccaaacatcggacttatcacgtcgcttactacctatgctagaataaatgac
tatggatttatagaggcaccatatagaagagttgacaaagaagctggagtagtcacaaat
gagattgattacttaacggcagatgttgaagatgaatttatcattgcccaatcaaatgag
ccattagatgctgaaggtaagtttgtcaataaaagagcactagctagagcgaaatatgga
agcattgaagtagtaccagtagacgaagtggattacatggacgtatcacctaagcaaata
gttgctgtggctactgctatgataccatttttggagaatgatgacgccaatagagcgctg
atgggtgcaaacatgcagcgtcaggctgtaccgctattaaaaacagaagctccaattata
ggtacaggaatggaatatagagctgcaaaggattcaggagtagtatcagttgcaaaaaat
gctggagttgtccttagggtagcaacagatgaaatattaataagaagagatgaagacgga
caaatagataaatataaactgttgaagtttaaacgttcaaaccaaggaacatgtataaat
caaagacctattgtaagaaagcatgaaagagttaaaaaaggtcaggttatagcagacggt
ccttcaacagatcaaggcgaaattgcacttggtaaaaacctacttattggatttatgaca
tgggaaggctataactacgaagatgctattttgttgaatgaaaaggttgtaagagaagac
atattaacctcagttcacatagaagagtatgaatcagaggctagagatacaaagcttgga
ccagaagagattacaagagatataccaaatgtgggagaagattcattaaaggacctggat
gaaagaggaattatcagaataggtgcagaggttgaagcaaatgacatattagtaggcaag
gttacaccaaagggagagacagagcttactgctgaagaaagattattaagagcaatattt
ggtgaaaaggctagggaagttagagatacttcactgagagtgcctcacggagagacagga
ataattgtagatgtaaaagtatttacaagggaaaatggagatgaattacctccaggagtc
aatcaacttgtcagagtatatatagcaacaaaacgtaaaatcaatgttggagataagatg
tgtggtaggcatggtaataagggtgttgtttctaggattcttcctgaagaggatatgcct
ttcttgccagatggaacaccactagaggttgttcttaatccactgggagttccttctcgt
atgaacattggtcaggtattggaggtacatctaggattagctgcaaaaaaagcaggctgg
catgttgctactccagtatttgatggagctaatgaaaatgatatatgggatgctttaaag
gacgtgggatatccagaaagcggaaaaataaaccttagagacggtagatcaggaaaggcc
tttgacaatccagttacagttggatacatgtatatgcttaagcttcaccatttagttgat
gataaaattcacgctagatctacaggcccttattctctagttactcaacagccattagga
ggtaaagctcagtttggtggccagagatttggtgagatggaggtatgggcattagaggct
tatggtgcttcccatactcttcaagagatattgacagttaaatcggatgacgtagtagga
cgtgtgaagacatatgaagcaatagttaaaggagagaatattcctgaaccaggaattcca
gaatcatttaaggttcttataaaagaactgcaaagtttagcattagatgttaaagtaata
actgatgataaggaaatagaaatcaaagaatcagtagatgatgaaattggcgatttaaat
attggcttcgatgtggaagataaagatagcgagtttgaaagtgaatattataatgattat
gatgagactaatgtagaaaatgttgaggaagatcttgaaagtgaggaatctgacgatgat
aagttcatctttgaagatgatgaattgtttgatgaagatttcgatgactag
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