Pseudoalteromonas rubra: AT705_13470
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Entry
AT705_13470 CDS
T04179
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
prr
Pseudoalteromonas rubra
Pathway
prr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
prr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AT705_13470 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prr03021
]
AT705_13470 (rpoB)
03400 DNA repair and recombination proteins [BR:
prr03400
]
AT705_13470 (rpoB)
Enzymes [BR:
prr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AT705_13470 (rpoB)
Transcription machinery [BR:
prr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AT705_13470 (rpoB)
DNA repair and recombination proteins [BR:
prr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AT705_13470 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ALU43865
UniProt:
A0A0U3HRD9
LinkDB
All DBs
Position
1:3091479..3095504
Genome browser
AA seq
1341 aa
AA seq
DB search
MAYSYSEKKRIRKDFGKRPQVLDIPFLLQTQLESFKKFITPDADGDTGLEAAFRSVFPIK
SYSGNSELQYVSYRIGEPVFDVKECQIRGVTFSAPLRVKLRLVLMDKEAPGTVKDIKEQE
VYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDNDRGKSHSSGKVLYNARVIPYRG
SWLDFEFDVKDNLFVRIDRRRKLPASIILRALEFSTEEILGMFFETTAFEVTNGKVMMEL
VPSRLRGETAAFDIKDADGEVLVEQGRRITARHIKTIEKKGIDQLEVPHEYIIGRVVARN
YIDESTGEIIAEANAELSLELMAELVKAGHTKIDTLYINDVDSGAYMSETVRIDSTANRL
EALVEIYRMMRPGEPPTKEAAEALFDNLFFSDERYDLSTVGRMKFNSRVGYDTDTGPGTL
SKEDIVSVMKVLIDIRNGKGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS
LGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLSTYARTNDYGFLETPYRKVVDGVVT
DDVDYLSAIEEGQFVIAQANTNLTEENQFAEELIPCRYKGESTFMPSDSIQYMDVSPQQV
ISVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIERTLAKDSGVTIVAKR
GGVVKYADASRIVVNVNEEERVPGEAGIDIYNLTKYTRSNQNTCINQKPTCMVGEPVVRG
DVLADGPSTDLGDLALGQNLRVAFMPWNGYNFEDSILLSERVVQEDRLTTIHIQELQCIA
RDTKLGPEEITADIPNVGESALGKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEVEDMQLREAKKDF
NEEFRILEGGILTRARDLLVRAGLSEDKIADLNAEKLLTQSLADEEQQAELEQLAAQYDE
LKAEYDKKFENKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISTIV
PVEDMPYDEKGRTVDIVLNPLGVPSRMNIGQILETHMGLAARGIGERIEDMMKEQRELHE
MRDFIKQAYEIGDCRQKVDIANFSDDEIRRLAHNLKGGLPIATPAFDGAREAEIKDMLEL
GGYPRSGQVTLYDGRTGDAFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHKMEPGMPE
SFNVLLKEIRSLGINIELEES
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcttattctgaaaagaaacgtatccgtaaggattttggtaaacgtccacaa
gttttggacatacctttccttttgcaaacgcagttggaatcgttcaaaaagttcattaca
ccggacgcggatggtgataccggactggaagcggcattccgttctgtgttcccgatcaaa
agctactcgggcaattctgagcttcaatacgttagctaccgtattggagagccagtattc
gatgtaaaagaatgtcaaattcgcggtgtgactttttctgctccacttcgcgtaaaactt
cgtcttgtgctaatggacaaagaagcaccaggcacagttaaagacattaaagagcaagaa
gtttacatgggcgaaatcccgctcatgactgacacaggtacttttgttatcaatggtact
gaacgtgttatcgtttctcagctacaccgttcacctggtgtattctttgataacgaccgt
ggtaaatcacactcgtcgggtaaagtactatataacgcacgcgtgatcccataccgtggt
tcgtggttagactttgaattcgatgtaaaagataacctgtttgtacgtatcgaccgtcgt
cgtaaactgcctgcgtcaatcattctacgtgcccttgaattctcaacagaagaaattcta
ggcatgttcttcgaaacgactgcgttcgaagtgactaacggcaaagtgatgatggaattg
gtaccatctcgactacgtggtgaaaccgctgcttttgatatcaaagatgcagacggtgaa
gtcctggttgagcagggtcgccgtatcacagcccgtcatataaaaacaatcgagaaaaag
ggcattgaccagttagaagtaccgcatgagtacatcattggtcgtgtggttgcgagaaac
tacatcgatgagtcaactggcgagatcattgctgaagcgaatgctgagctgtctctggag
ttgatggccgagctggttaaagcaggtcacacaaaaatcgacaccctgtacatcaatgat
gtagacagcggtgcttacatgtcagaaactgttcgtatcgacagcacggcaaaccgtctt
gaagcactggtagaaatctaccgcatgatgcgcccgggtgagccaccaacaaaagaagca
gcagaagccttattcgataatctgttcttctctgacgagcgttatgacttgtcaacggtt
ggtcgtatgaagttcaacagccgtgttggttatgatactgacacaggtcctggcacgctg
agcaaagaagacattgttagcgtaatgaaggtgttgatcgacatccgtaacggtaaaggt
gatgtggacgatatcgaccacttaggtaaccgtcgtatccgttctgtaggtgaaatggca
gaaaaccagttccgcgttggtttagtacgtgttgagcgtgctgtacgtgagcgtctgagc
ttgggtgatctggataatgtaatgcctcaggatctgatcaacgctaagccaatttctgct
gccgttaaagaattctttggttcttcacagctgtctcagtttatggatcagaacaacccg
ctgtcagaagtaacgcacaagcgtcgtatttctgcacttggtccgggtggtctgactcgt
gagcgtgctggcttcgaggttcgagacgtacacgtaacgcactacggtcgtgtttgtcca
atcgaaacgcctgaaggtccaaacatcggtctgatcaactcattgtctacgtacgcacgt
accaacgattatggtttccttgaaacaccatatcgtaaagtggttgatggcgtcgtaacg
gatgacgttgattacctgtctgcaattgaagaaggtcagttcgtaatcgcacaggcgaac
actaacctgactgaagaaaaccagtttgcagaagaactgatcccatgtcgttataaaggt
gaatcaacctttatgccaagcgacagcatccagtatatggatgtatctccacagcaggtt
atctctgtggcagcggcacttatcccattccttgaacacgatgatgcgaaccgtgcattg
atgggatcgaacatgcaacgtcaggctgtaccaacactgcgcgcagacaagccgctggta
ggtacaggtattgaacgtacgctggcaaaagactctggtgtaaccattgttgctaagcgt
ggcggtgtggtgaagtatgcagatgcaagccgtatcgttgttaacgtgaacgaagaagag
cgcgtacctggtgaagcgggtatcgacatctacaacctgacgaaatacacccgttctaac
cagaacacctgtatcaaccaaaaaccaacttgtatggttggtgagccggttgtccgtggt
gacgttctggcggatggtccttcgactgacctgggcgacctggctcttggtcaaaacctg
cgcgtggcattcatgccgtggaatggttacaacttcgaggattcaatcctactttcagag
cgtgtagttcaggaagatcgcctaactacgatccacattcaggaactgcagtgtatcgct
cgtgatactaagcttggtccagaagagatcacagcggatatcccgaatgttggtgagtct
gcgctaggtaagctggacgaatcaggtgttgtatacatcggtgctgaagtaaaaggcggc
gatatcctggttggtaaagtaacaccgaaaggtgaaacgcagttgacgcctgaagaaaag
ctactacgtgctatcttcggtgaaaaagcgtctgacgtgaaagacagctcgctacgtgta
cctaactctgtatctggtacggttatcgacgttcaggtctttacccgtgatggcgtagag
aaagacaagcgtgcattggaagttgaagacatgcagcttcgcgaagcgaagaaagacttc
aacgaagaattccgtatccttgaaggtggtattctgactcgtgcgcgtgacctgctggta
cgtgctggtctgagcgaagacaagatcgcagacctgaacgctgaaaagctactaacgcaa
agcctggctgacgaagagcagcaagctgaactagagcaactggctgcgcagtacgacgag
ctgaaagcagaatacgataagaagtttgaaaacaaacgtcgcaagatcacccaaggtgat
gatctggcgccgggcgtactgaagatcgttaaggtttacctggctgttaagcgtcgcatc
caaccgggtgataagatggcgggtcgtcacggtaacaagggtgttatctctactatcgtg
cctgttgaagacatgccttacgatgaaaaaggtcgtacggtagacatcgttctgaacccg
ctgggtgtaccatcgcggatgaacatcggtcagatccttgaaactcacatgggtcttgct
gcacgcggtattggtgagcgcattgaagacatgatgaaagagcaacgtgaactccacgaa
atgcgcgatttcatcaagcaagcctacgaaatcggtgattgccgtcagaaagttgatatt
gctaacttctctgatgatgagatccgtcgtctggcacacaaccttaaaggtggtctgcca
atcgcaacgccagcatttgacggtgcacgcgaagctgaaatcaaagacatgctagagctg
ggtggttatccaagaagtggtcaggtaacgctatatgatggtcgtactggtgatgcattt
gagcgtcaggtaacagttggctacatgtatatgctgaaactgaaccaccttgttgatgac
aaaatgcacgcacgttctaccggttcttacagcctggttactcagcagccgctgggtggt
aaggcacagttcggtggtcagcgtttcggtgagatggaggtatgggcacttgaagcatac
ggtgctgcctacacgctacaagaaatgttgacagtgaagtcggatgacgtaaacggccgt
actaagatgtataagaacatcgtggacggcaaccataagatggaaccgggcatgccggaa
tcattcaacgtattgttgaaagagatccgctcgctgggtatcaacatcgaattggaagaa
agttga
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