Pyrgilauda ruficollis (rufous-necked snowfinch): 121348777
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Entry
121348777 CDS
T07608
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121348777 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pruf03019
]
121348777 (CNOT1)
Messenger RNA biogenesis [BR:
pruf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121348777 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121348777 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
121348777
NCBI-ProteinID:
XP_041314594
LinkDB
All DBs
Position
Unknown
AA seq
2377 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCASVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITMAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQDLVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQQAWATDDVAQIYDKCMTEL
EQHLQSIPHTLAMNPQVQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADAD
LLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNM
QQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSR
GNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRALAEQQH
NPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHD
VRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWL
ELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVL
LVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEIN
IAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALV
LYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNS
HTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWN
HEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7134 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaataggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcgtacgccattgacaatcccttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtctggctttactgaactctttcagctcagat
ctgcgaggttttgctgcccagtttatcaaacagaaactcccggatcttttgcgctcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctctttgggcagaagggagcctttggggtaggacag
gagcagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagctctctggcagatttcatgcaa
gaagttggctatggcttttgtgcaagtgtcgaagaatgtcgcaacataatcatgcagttt
ggtgttcgcgaagtcacggctgcccaggttgccagggttttggggatgatggctcgaact
cattcaggattgacggatggaattccattacaatctatttcggctcctggcagtgggatt
tggagtgatggcaaagacaagagtgatggaagccaagcccatacctggaatgtggaggtc
ttgattgatgttcttaaagagctgaaccctagcctggacttcaaagtagtgacatatgaa
ttggaccatccgggatttcagattcgtgatagcaagggcctgcatattgtagtttttggc
atccagagagggcttggcatggaggtttttccagttaatgccatatacagaccttggaag
catgcagagggccagctctccttcatccaacattccctcataaaccctgacatcttctgt
tttgctgactacccttgccatactgttgccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacatggaagagcctggatttgattgagtctctgttacgattg
gcagaagtggggcagtatgaacaggttaagcagctcttcagttttcctatcaagcattgc
ccagatatgctggtattggccttattgcagatcaacacgtcctggcacaccttgcgccat
gaactcatctccacgctcatgccaattttccttggcaaccatcccaactcagccatcatt
ttgcactatgcatggcatggacagggtcagtctccttcaattcgtcagcttatcatgcat
gccatggcagaatggtacatgagaggggagcaatatgaccaggcaaaattgtcacgtatt
cttgatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggaacctttcatccaggcctgtatgactttctta
aagagaagatgtccatctatcctgggcggccttgctccagaaaaggatcagcccaaaagt
gctcagcttcctccagaaaccttggcgactatgttggcctgtctgcaagcttgtgctggg
agtgtttctcaggagctgtcagagacgatcctcaccatggtagcaaactgcagtaatgtc
atgaacaaggcgcggcagcccccacctggagtcatgcccaaaggacgcccgcccagcgcc
agcagcttggatgccatctctcctgtgcagatcgactcgcttgcaggaatggcctctctt
agtttaggtggctcagctgctcctcacacccagagcatgcaaggcttccctccaaacttg
ggctctgcgttcagcactcctcagtcaccagcaaaagcgttcccgcctctttccacccaa
aaccagacaaccggtttcagtggcatcggaggactttcttcacagcttccagtaggtggt
cttactacgggtagcctgactggcataggaactggagctctgggccttcctgcggtgaac
aatgatccattcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcacttt
agcaaagaaatagatgatgaggcaaacagctacttccagcgtatttacaaccatccacca
cacccaaccatgtccgtggatgaggtcttggaaatgctgcagagatttaaggactccaac
attaaacgggaacgagaagtgtttaactgtatgctgaggaatttgtttgaggaatatcgt
ttctttccccagtacccagacaaagagctgcacataactgcctgtctcttcgggggcatc
atagagaaaggactggttacttacatggcattgggcctggccctgcgctatgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttcccacatcatttacaggagtacatagaatatggacagcaatccagagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaggttccagcaaaagctcctcttgctggccaagtcagcactatagtg
accacctcaaccaccaccactgttgcaaaaaccattacgatcacccgaccaactggagtc
agcttcaagaaagatgtgccgccttccattaatactaccaacattgatacgctgttagta
gcaacagatcaaacagagaggattgtggaacctccagagaatgtccaggaaaaaattgct
ttcatcttcaataatctgtctcagtcaaatatgacacagaaggtggaagaattgaaggaa
acagtgaaagaagagttcatgccttgggtatcacagtatcttgtgatgaaaagagtcagt
attgagcctaactttcacagcttatattcaaacttccttgacacacttaagaatccggag
tttaataaaatggttctaaatgaaacctacagaaatatcaaggtgctattgacatcagat
aaagctgcagccaacttctcagaccgttccttgttaaagaaccttggtcactggctggga
atgataacgatggctaaaaataagcccatcttgcacacggatttggatgtgaagtcacta
ctactggaagcatacgttaagggacagcaggaattgctttatgtagtgccattcgttgcc
aaagtcttagaatccagtgtcaggagtgtggtcttcaggccaccaaacccgtggacaatg
gccattatgaatgttttagctgagctacatcaggaacatgatctaaaattgaatctcaag
tttgagattgaggtgctctgcaagaatcttgcactggacatcaatgagctgaaacctgga
agtctcctgaaagacaaggaccgtctgaaaaatctggatgagcagctgtctgctccaaag
aaggatgtgaagcagccagaagagttaccacccatcacaacaaccactgcttctacaact
ccagctaccagcaccacttgtacagccacggttcctccacagccccagtacagttaccat
gacatcaacgtctattctctgggagggttggctccacacattaccttaaatccaacgatt
ccgctgttccaagcgcacccgcagctgaagcagtgtgtgcggcaggccatcgagcgtgca
gtgcaggacctcgtccatcccgtggtggacagatccatcaagattgccatgacaacctgt
gagcagatagtcaggaaggacttcgccctggattccgaggagtcccggatgcgtgtggcc
gctcaccacatgatgaggaacctgactgctgggatggccatgattacctgcagggagcct
ttgctgatgagcatagctaccaacttgaaaaatagctttgctactgcgctgagggcagcc
tccccacagcagagggacatgatggagcaggcagctgcccagttagcacaggataactgt
gagcttgcctgctgctttatccagaagacagctgtggaaaaggcaggccctgagatggac
aagaggctcgcaactgaatttgagctcagaaagcatgctaggcaagaggggcgtcgctac
tgcgatcccgttgtgttaacgtaccaggccgagcggatgccagagcagatcaggttaaag
gttggaggtgtggacccaaaacagctggctgtttatgaggagtttgcacgcaatgtccct
ggcttcttgcccaccaatgacttaactcagcctacaggattcttggctcagcctatgaag
cagcaagcttgggctacagatgatgtagcacaaatttatgacaaatgtatgacagagctg
gagcagcacctgcaatccattccacacaccctggccatgaatcctcaagttcaagcactg
cgtagcctcttggaggccgtggtagtggctcggaactcccgggatgctattgctgcactg
gggctactgcagaaggctgtagagggcttgctggatgccaccagtggggctgatgctgac
ctcctgctccgctatcgtgagtgtcacctgctggtgctgaaggctctgcaggatggccgt
gcctatggctctccatggtgcaacaaacaaatcactaggtgcctgattgaatgcagagat
gagtacaagtacaacgtggaagctgtggagctgctaatccgcaatcaccttgtgaacatg
cagcagtatgaccttcacttggctcagtccatggagaatggcttgaactacatggctgtg
gcatttgccatgcagttggtaaagatcttgttggtggatgagagaagtgttgcccatgta
acagaagcagatctgtttcacaccattgagacactcatgagaattaatgctcattccaga
ggaaacgccccagaaggattaccccagctgatggaagtggtccgatcaaactatgaagca
atgattgatcgtgctcatggaggtcctaatttcatgatgcattcaggaatttcccaagct
tctgagtatgatgacccaccaggcctgagggagaaggcagaatacctgctgagggagtgg
gtgaacctctaccattcagctgcagcaggccgtgacagtaccaaagcattctctgcgttt
gttggacagatgcaccagcaggggatcctgaaaacagatgacctgatcacccgtttcttc
cgtctttgcaccgaaatgtgtgttgagatcagctaccgagccctggccgagcagcagcac
aaccctgcagccaaccccaccatgattcgagccaagtgctaccacaacctggatgccttt
gtgcgactcattgcactgctggtgaagcactctggggaggcaaccaacacagtcacaaag
atcaacctcctgaataaggttcttggtattgtggtgggagttcttctgcaagaccatgat
gttcggcagagtgagtttcagcaacttccttaccatcgcattttcatcatgttgctgttg
gaattaaatgctcctgagcatgtgctggagaccatcaacttccagacactcacagctttc
tgtaacacatttcacatcctgaggcctacaaaagctccaggttttgtttatgcctggctg
gaactgatctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaag
ggttggcctatgtatgcccagttattgatcgatctgttcaagtacttggctcctttcctt
agaaatgtggaactcaccaaacctatgcaaattctttataagggcactctgcgtgtgttg
ctggtcttgttgcatgatttcccagaatttctttgtgactaccactatgggttctgtgat
gtgatcccacctaactgtattcagctaaggaatctgatcctgagtgccttcccacggaac
atgaggcttccagaccctttcacccccaacctaaaggtggacatgttaagtgagattaat
attgctccacgaatactcacaaatttcactggagtgatgccacctcagttcaagaaagac
ttggattcctatctcaaaacccgttctccagtcacctttttgtctgacttgcggagcaac
ctacaagtatcaaatgaacctggcaaccgctacaacatccagctgataaatgcactggtg
ctctacgtaggtactcaagctattgcacacattcacaacaaaggcagcacaccctccatg
agcaccattacccactcagctcacatggacatcttccagaatttggcagtagatctggat
actgaaggccggtacctcttcctgaacgccatcgccaaccagctgcggtaccccaacagt
cacacccactacttcagctgcaccatgctctacctgtttgcagaggccaacacagaggcc
atccaggagcagatcaccagggttctcttggaacgactgattgtaaataggcctcatccc
tggggtctccttattacattcattgagctgataaaaaatccagcctttaagttctggaac
catgagtttgttcactgtgctccagaaattgagaagttgttccagtcggttgcacagtgc
tgcatggggcagaagcaggcccagcaagttatggaagggactggtgccagttag
DBGET
integrated database retrieval system
