Pyrgilauda ruficollis (rufous-necked snowfinch): 121361037
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Entry
121361037 CDS
T07608
Symbol
POLR2A
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03020
RNA polymerase
pruf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121361037 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
121361037 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pruf03021
]
121361037 (POLR2A)
03400 DNA repair and recombination proteins [BR:
pruf03400
]
121361037 (POLR2A)
Enzymes [BR:
pruf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121361037 (POLR2A)
Transcription machinery [BR:
pruf03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
121361037 (POLR2A)
DNA repair and recombination proteins [BR:
pruf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
121361037 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_6
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
121361037
NCBI-ProteinID:
XP_041337274
LinkDB
All DBs
Position
Unknown
AA seq
1820 aa
AA seq
DB search
MHGGPPSGDSACPLRTIKRVQFGILSPDEMKRMSVTEGGIKYPETTEGGRPKLGGLMDPR
QGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLGKTMKILRCVCFFCSKLLVDS
NNPKIKDILGKSKGQPKKRLTHVYDLCKGKNICEGGEEMDHKFGVEQPEGDEDLTKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMDPK
FARPEWMVCPQVIAEDVKVLQFHVATMVDKELPSLPQAMQKSGRPLKSLKQRLKGKEGRV
RGNLMGKRVDFSARTVITPDPNLAIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGN
SQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMM
GHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQS
NRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQ
IFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAG
SLVHISYLEMGHDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAK
QDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMV
VSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAG
LTPTEFFFHAMGGREGLIDTAVKTAETGQCPRNVTVGLSGVQNSTQGTSSTPKFQFPFWG
CMEVLRVIFPTRDSKVVLPCNLLRMIWNAQKIFHINSRLPSDLHPVKVVEGVKELSRKLV
IVNGEDPLSRQAQENATLLFNIHLRSTLCSRRMVEEFRLSGEAFDWLLGEIESKFNQAIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTV
FLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPD
FDVSRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LYHVISFDGSYVNYRHLALLCDTMTSRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLME
AAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKHGMEIPSALPGLGVGGSTGM
FFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGGAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPSSPYIPSPGEYSPKNTPKYPELKXCKTPCNPXHHPITPQNSPIT
PPHXAPQHPNNTPKGPPKPPTAPQHPNNISKGLTTLYNTPTPPQRDPQHLQHLINTSKGP
PTPQHSNSPTTPEQHFKGPHNPLQHLNHPPITLLTSCPLSAGGAMSPSYSPTSPAYEPRS
PGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTPSSPEYTPTSPKYSPTSPKYSPTSPKYSP
TSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT
SPTYSLTSPAISPDDSDDDN
NT seq
5463 nt
NT seq
+upstream
nt +downstream
nt
atgcacggcgggccgccctcgggcgacagcgcctgcccgctgcgcaccatcaaacgagtc
cagttcgggatcctcagccccgatgagatgaaacggatgtcggtgactgaggggggcatc
aagtaccccgaaaccaccgaggggggacgccccaaactgggggggctcatggacccccgg
cagggcgtcatcgagaggacggggcgctgccagacctgtgctgggaacatgacggagtgt
ccgggccactttggccacatcgagctggccaagcccgtgttccacgtgggatttttgggc
aaaaccatgaaaatcctgcgctgcgtctgcttcttctgctccaagctgctcgtggactcg
aacaaccccaaaatcaaggacatcctgggcaagtccaaggggcagcccaagaagaggctg
acccacgtctacgacctgtgcaagggcaagaacatctgcgaggggggcgaggagatggac
cacaagtttggggtggagcagcccgaaggcgacgaggacctcaccaaggagaagggccac
ggcggctgcgggcgctaccagccgcgcatccgccgctcggggctggagctgtacgccgag
tggaagcacgtcaacgaggactcccaggagaagaagatcctgctgagccccgagcgcgtg
cacgagatcttcaagcgcatctcggacgaggagtgcttcgtgctgggcatggaccccaaa
ttcgcccggcccgagtggatggtgtgtccccaagtcatcgccgaggacgtcaaggtgctg
cagtttcacgtggccaccatggtggataaggagctgcccagcctcccccaggccatgcag
aagtcggggcgccccctcaagtccctgaagcagcggctgaaggggaaggagggtcgggtt
cggggcaacctgatggggaaacgcgtggatttctccgcccgcaccgtcatcacccccgac
cccaacctggccatcgaccaggtgggcgtgccgcgctccatcgccgccaacatgaccttc
gccgagatcgtcacccccttcaacatcgacaggctgcaggagctggtgcgcagggggaac
agtcagtacccgggggccaagtacatcatcagggacaacggggacaggatcgacctccgc
ttccaccccaaacccagcgacctccacctgcagatcggctacaaggtggagcgtcacatg
tgcgacggggacatcgtcatcttcaaccggcagcccaccctgcacaagatgtccatgatg
ggccacagggtcaggatcctgccctggtccaccttccgtctgaatctcagtgtcaccacg
ccctacaacgccgactttgacggcgacgagatgaacctgcacctgcctcagtcgctggag
acgcgggcggagatccaggagctggccatggtgccccggatgatcgtcaccccccagagc
aaccggcccgtcatgggcatcgtgcaggacacgctgacggccgtgcgcaagttcaccaag
agggacgtcttccttgagaggggtgaggtgatgaacctgctgatgttcctgtccacgtgg
gatggcaaggtgccccagccagccatcctgaagccgcggccgctctggacagggaagcaa
atcttctccctgatcatccctggccacatcaactgcatccgcacccacagcacccacccc
gacgacgaggacagcggcccctacaagcacatctcccctggggacaccaaggtgatcgtg
gagaacggagaactcatcatgggcatcctgtgcaagaagtccctggggacgtcggccggg
tccctggtgcacatctcctacctggagatgggccacgacaccacgcggctcttctacagc
aacatccagactgtcatcaacaactggctgctcatcgagggtcacaccatcggcatcggg
gactccatcgctgacgccaagacctaccaggacatccagaacaccatcaagaaggccaag
caggatgtcatcgaggtgatcgagaaggcccacaacaacgagctggagcccaccccaggc
aacaccttgcgccagacctttgagaaccaggtgaacaggatcctcaacgacgcccgtgac
aagaccggctcctctgcccagaaatccctgtccgagtacaacaacttcaaatccatggtg
gtctcgggggccaagggctccaagatcaacatctcccaggtgatcgcggtggtggggcag
cagaacgtggagggcaagcggatcccgttcggcttcaagcaccggacgctgccgcacttc
atcaaggacgactacggccccgagagccgcggctttgtggagaactcctacctggccggc
ctcacccccaccgagttcttcttccacgccatgggtggccgcgagggcctcatcgacacg
gccgtgaagacggccgagaccggtcagtgtccccggaacgtcaccgtggggctttcagga
gtccaaaattccacccaagggacctccagcaccccaaaattccaattccccttttgggga
tgcatggaggtcctcagggtcatcttccccaccagggacagcaaggtggtgctcccctgt
aacctgctccgcatgatctggaacgcgcagaagatcttccacatcaactcccggctgccc
tcggacctgcacccggtcaaggtggtggagggggtgaaggagctgagccgcaagctggtg
atcgtcaacggggaggacccgctgagccggcaggcgcaggagaacgcgacgctgctcttc
aacatccacctgcgctccacgctctgcagccgccgcatggtggaggagttccggctcagc
ggggaggccttcgactggctgctgggcgagatcgagtccaagttcaaccaggccatcgcc
caccccggtgagatggtgggcgcgctggccgcgcagtccctgggcgagccggccacgcag
atgaccctcaacaccttccactacgcgggggtgtcggccaagaacgtcaccctgggcgtc
ccccgcctcaaggagctcatcaacatctccaagaagcccaagacgccgtcactcaccgtg
ttcctgctgggccagagcgcccgcgacgccgagcgtgccaaggacatcctgtgccgcctg
gagcacaccacgctgcgcaaggtgacggccaacaccgccatctactacgaccccaaccct
cagagcacggtggtggccgaggaccaggagtgggtcaacgtctactacgagatgcccgac
ttcgacgtcagccgcatctcgccgtggctgctgcgcgtcgagctggaccgcaagcacatg
accgaccgcaagctgaccatggagcagatcgccgagaagatcaacgccggctttggtgac
gacctcaactgcatcttcaacgacgacaacgccgagaagctggtgctgcgcatccgcatc
atgaacagcgacgagaacaagatgcaggaggaggaggaggtggtggacaagatggacgac
gacgtcttcctgcgctgcatcgagtccaacatgctgacggacatgaccctgcagggcatc
gagcagatcagcaaggtgtacatgcacctgccgcagacggacaacaagaagaagatcatc
atcaccgaggacggggagttcaaggctctccaggagtggatcctggagaccgacggcgtc
agcctcatgcgggtgctgagcgagaaggacgtggaccccgtgcgcaccacctccaacgac
atcgtggagatcttcaccgttctggggatcgaggcggtgcggaaggcgctggagcgggag
ctctaccacgtcatctccttcgacggctcctacgtcaactaccggcacctggcgctgctg
tgcgacaccatgacgtcccggggacacctgatggccatcacccggcacggcgtcaaccgc
caggacaccgggcccctcatgaagtgctccttcgaggagacggtcgatgtcctgatggaa
gcagctgcccacggggagagtgaccccatgaagggcgtgtccgagaacatcatgctgggc
cagctggccccggccggcaccggctgcttcgatctcctgctggacgccgagaagtgcaag
cacggcatggagatccccagcgccctgcccggcctcggcgtcggcggctccaccgggatg
ttcttcggctcggcccccagccccatgggggggatgtccccagccatgaccccctggaac
cagggggccaccccggcctacggcgcctggtcccccagcgtgggcagcggcatgaccccg
ggcggggccgggttctcccccagcgccgcctccgacgcctccgggttcagccccggctac
tccccggcctggtcacccacgcccggctcgccggggtcacccggcccctccagcccctac
atcccctcccccggtgagtacagccccaaaaacaccccaaaataccctgaactcaaataa
tgcaaaacaccctgtaacccctaacaccatcccataacaccccaaaacagtcccataaca
ccccctcactgagccccacaacacccaaacaacaccccaaagggacccccaaaacctcca
acagccccacaacacccgaacaacatctcaaagggcctcacaacactctacaacacccca
acaccacctcaaagggacccccaacacctccaacacctgattaacacctcaaagggaccc
ccaacaccccaacactccaacagccccacaacacctgaacaacatttcaaagggcctcac
aaccctctacaacacctcaaccacccccccatcaccctcctgacctcctgtcccctctcc
gcaggtggggccatgtcccccagctacagcccgacgtcccccgcctacgagccgcggtcg
ccggggggctacaccccacagagccccagctacagccccacttctcccagttacagcccc
acctcccccagttacagccccacctcacccaactacagcccaacctctcccagttacagc
cccacctctcccagttacagccccacctcgccaagttacagccccacttcacccagttac
agccccacgtccccaagctacagcccgacctcccccagttacagccccacctcgcccagc
tacagcccgacatcgccgagttacagcccgacgcccagctcccccgagtacaccccgacc
tcgcccaagtacagccccacgtcccccaagtacagccccacgtcacccaagtacagcccc
acctcgcccacctacagccccacctcgcccgtctacaccccgacgtcgcccaagtacagc
cccacctcgcccacctacagccccacgtcgcccaagtacagccccacgtcccccacctac
agccccacgtcgcccaagggctccacgtacagccccacgtcccctggctacagccccacg
tcgcccacctacagcctcaccagcccggccatcagccccgacgacagcgacgacgacaac
tga
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integrated database retrieval system
