Pyrgilauda ruficollis (rufous-necked snowfinch): 121361219
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Entry
121361219 CDS
T07608
Symbol
POLR1A
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
pruf
Pyrgilauda ruficollis (rufous-necked snowfinch)
Pathway
pruf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pruf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121361219 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pruf03021
]
121361219 (POLR1A)
Enzymes [BR:
pruf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121361219 (POLR1A)
Transcription machinery [BR:
pruf03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
121361219 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
HMG_box
Motif
Other DBs
NCBI-GeneID:
121361219
NCBI-ProteinID:
XP_041337679
LinkDB
All DBs
Position
Unknown
AA seq
1778 aa
AA seq
DB search
MPPRRAGLWEGGRHHSSSGGDAGTASLRRWYRPAPPPPRCPDRVVLPVARRFQRESGSRC
RPGKNCSFAMRPPKVVPWRRLVGVSFGMYTAEEIRKLSVKPITNPQYLDNVGNPAVNGLY
DLALGPPDSREVCATCMQNFSNCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLNCHMLT
CPRAVVHLLLSQLKVLQKGLLHAVHDLEIVLNRFVEQCADATGSEIEEELNRHVQEMLQS
SQIRDRCSNVKNVCECRNKLISQFWKAHMASKKCPNCKSRRSLVRKEHNSKLTVTYPSTV
YHKSGEEGILDETAGIDESQLGKRGYLTPMTAKEYILALWKNEGFFLRYLFPGMDPNDSS
GFSPDMFFLDLLVVPPSRYRPVNRLGDRLFTNGQTVNLQAVMKDAQLIRKLLVFMAKEQC
QPIKFTEEIQTETGEDSEPLDRSVLTTIPGQSIADKLYNAWIRLQSHVNIVFDSDMDKLI
TEKYPGIRQLLEKKEGLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQ
PVTPWNVKELRQAVINGPKVHPGASMVINEDGSRTVLSATSLTQREAIAKQLLTPSSGAP
QTGLKIVCRHIRNGDVLLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDG
DEMNAHFPQSELGRAEAYTLAITDKQYLVPKASRTAREIYFXMHLEITFVYFVSXXMGFF
FXGCLLTSEVYFLLLSRGMIIQKKKIIPAPHPASLXVVSTLLINIIPDNHAPLNLTGKAK
IGGRAWVKGPAKGCLNLDSMCESQVIIKDGELLCGVLDKAHFGSSAYGLVHCCYEIYGGE
TSGKVLTCLGRLFTAYLQLYRGFTMGIEDILVKREADHKRKKIIERSRQSGIEAVRAALN
LPETASCEEVQGKWQDAHLCKDQRDFNMVDMKFKEEVNNYNNEVNKVCMPLGLHRSFPEN
NLQLMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVT
GRFLTGIRPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDG
SVVQFLYGEDGLDIPKTQFLQPEQFPFIAENYEVIQKTNHLDEALARMESHQANQQFKAI
KKWRARHQNSVQREGGFLLFSQKKLASLKAQLPGGEIKNGRDPATLQLLKMWYELDEKKQ
RKYLKKTNKCPDPSLGVWRPDTYFASVSETFEKGVEGYINKWESENSRSYMHPALSSDRL
KDLLYLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREIL
MVASSNIKTPMMSVPVLNTKKALKKVKQLKKLLTRVCLAEVLEKVDIEESLHVKHKLNKH
RLYKIKFHFLPHECYREEKCVKPRQILHFMETRFFKVLLEAIKRKTTKMASFNEVSTRKT
TRKDLDDDQDKTVNSLEAVAEDEENIVDAEADEGDGDATETKRRKNQEEEVDYESEEENG
EENVNENPEDEEAESEKEEGTPGAEEDQNRAEGEDSQHLSIVSQTKKGKDRLLQSAEVRV
SAVVESHPSIQDYTFDTENELWCEVSLALPLTKVYFDLSSLLASLARSTVIHEVKGITRC
LLNESTSKEGEKESVLQTEGINLAELFKYSDILDLNRLYCNDIHAMAKNYGIESALRVII
KEIKDVFAVYGIVVDPRHLSLVADYMCFEGIYKPLNRIGIQSNSSPLQQMTFETSYKFLK
DATIMGAHDELRSPSACLVVGKVVKGGTGLFDLKQPLA
NT seq
5337 nt
NT seq
+upstream
nt +downstream
nt
atgccgccccggcgcgctggcctctgggaaggcggacgacaccactcctccagcggggga
gacgccggtaccgcctctctgcggcggtggtaccgcccggccccgccccccccccgctgc
ccggaccgcgtggtgctgcccgtggcgcggcgcttccaaagggagagcgggagccgctgt
cggccgggaaagaattgctcgttcgccatgaggccgcccaaagtggtgccgtggcggcgg
ctggttggggtgtccttcgggatgtacacggccgaggagatccggaagctgagcgtgaag
cccatcacgaacccgcagtacctggacaacgtgggcaatcccgctgtgaatgggctctac
gacctggccttgggaccccccgactccagggaagtgtgcgccacttgcatgcagaacttc
agcaactgccccggacactttggccacatagagctgcctctgcctgtgtacaaccccctg
ttcttcgataaattgtaccttctgatccgaggctcctgtttgaactgccacatgctgacc
tgccctcgagctgtggttcacctgctgctgagccagctgaaggtgctgcagaaagggctg
ctccacgctgtccacgacctcgaaatcgttctgaacaggtttgtagagcagtgtgcagat
gcaacaggctcagaaattgaggaagagttgaatcgccacgtgcaggaaatgttacagagc
tctcaaataagggatcggtgctcaaatgtcaaaaatgtgtgtgagtgtagaaataaactg
atatcacagttctggaaagcacacatggcttcaaagaaatgcccaaactgcaaatccagg
agatcactggtgcgaaaggagcacaacagcaagctgacagtaacctatccttctacagtg
taccataagtcaggagaggaaggcattctggatgaaacagcaggtattgatgaaagccag
ttagggaagagaggatacctgacaccaatgactgccaaggaatacatcctggctctgtgg
aagaatgaaggtttctttcttcgttatctcttccctgggatggatcccaatgatagttca
ggattcagtccagacatgttttttttagatctgcttgtggttccaccttcaaggtatcgt
cctgtaaatcgccttggagatcgcctgttcacaaacgggcagactgtgaacttgcaggct
gtgatgaaagatgcccaattgataaggaagctcttggttttcatggccaaagaacagtgt
cagccaataaaatttacagaagaaattcaaacagagacaggagaggatagtgaacctctg
gaccgttctgtgctgaccacaattccaggacagagcattgcagataagctgtacaacgcc
tggatacgtctccagagccatgtcaacattgtgtttgacagtgacatggacaagctgata
acagaaaaataccctggtattcgtcagctgttggagaagaaggaagggctgttccgcaag
cacatgatggggaagcgcgtggatttcgctgctcgatccgtcatttgccccgacatgtac
attgggaccaacgagattggcatccccatggtatttgccaccaaactgacttatcctcag
ccagtcactccctggaatgtcaaagagctgaggcaggctgtcatcaatggccccaaggtg
caccctggggcctccatggtcattaacgaggacgggtctcgcacggtgctgagcgccacc
agcctgacccagcgcgaggccatcgccaagcagctcctcaccccctcctcaggggcaccc
cagacaggcctgaagattgtgtgtcggcacatcaggaacggggacgtgctgctgctgaac
cgccagcccacgctgcacagaccctccatccaagcgcaccgcgcccgcatcctgcccggg
gagaaggtgctgaggctgcactacgccaactgcaaggcttacaacgccgacttcgatggg
gatgaaatgaatgcccatttcccacagagtgagctgggcagggcagaggcctacacctta
gccatcactgataaacagtacctggtgccaaaggcaagtagaactgccagagaaatttat
ttctagatgcatctagaaattacttttgtttattttgtctcatgataaatgggatttttt
ttttaaggctgtttacttacttctgaggtttatttcttgcttttatccagggggatgatt
atacaaaaaaaaaaaataattcctgcccctcatcctgcttctttataggttgtttccaca
ttgttaataaacatcattccagacaaccatgctccactgaatttgactgggaaagcaaaa
attggtggcagagcctgggtgaagggacctgcaaaaggatgtctgaatcttgattcaatg
tgtgaatctcaggttattatcaaagatggggaattactgtgtggagtgctggacaaagct
cactttggcagctctgcctatgggctggtccactgctgctatgagatctatgggggtgaa
accagtgggaaggtgctgacgtgtctggggcgcctcttcactgcttacctgcagctgtac
aggggattcaccatggggattgaagatattttggttaaacgtgaagcagaccacaaaaga
aaaaaaatcattgaaaggtcaaggcagagtggtattgaagccgttagagctgctcttaat
ttgccagaaacagcatcatgtgaggaggtccaagggaagtggcaggatgcccatctctgc
aaagaccagagggattttaacatggttgatatgaaattcaaggaggaagtaaacaattac
aacaatgaagtcaacaaggtttgcatgccccttggtctccacaggagctttccagagaac
aatttgcagttgatggtgcagtcaggagccaaaggatccactgtaaacacaatgcagatt
tcttgtttgctgggccagattgagctggaaggccgaagacccccactgatggcatctggc
aaatcactgccatgtttccaaccttatgacttttcccctagctcaggaggatttgtgact
ggcagatttctcactggaatcagaccttctgaattcttctttcactgcatggctggcagg
gaaggtcttgtggatacagctgtcaaaaccagccgttctgggtacctgcaaaggtgtatc
ataaaacatttggaaggactggtagttcagtatgacctgactgtacgagacagcgatggc
agcgtggtgcagtttctgtatggagaagatgggcttgatatccctaaaactcagttcttg
caacctgagcagtttcctttcattgcagaaaactatgaggtaatccagaagacaaaccat
ctggatgaagctttagcaaggatggagtctcaccaagctaaccagcagttcaaagccatc
aagaagtggcgagccagacaccaaaactctgtgcagagagaaggaggctttctgttgttt
tcccaaaagaaattggcaagtttgaaagcacagcttccaggaggtgaaataaagaatgga
agagatcctgctactttacagttgttgaagatgtggtatgagcttgatgagaagaaacaa
aggaagtatctgaagaagacaaataagtgtcctgacccaagccttggggtttggcgtcca
gatacttattttgcatcagtttcagaaacatttgaaaagggagttgaaggctatatcaat
aaatgggaatctgagaacagccggagctacatgcacccagcactttcttctgatagatta
aaggatctgttgtatttaaagtggcagcgttctctctgtgacccaggagaagctgtgggg
cttcttgctgctcagagcattggggaaccttcaacacagatgactctaaacaccttccac
tttgctggcagaggtgaaatgaatgtcacattgggtattccaaggttgagggaaatactg
atggtggccagctcaaacattaaaacaccgatgatgagtgttcctgtgctcaataccaag
aaagctctcaaaaaggtgaaacagcttaagaaactgctcacaagagtgtgcttggctgag
gtcttggagaaagtggacatcgaggaatccctgcatgtgaagcacaagctgaacaagcat
cgcctctacaaaatcaaattccatttcttgccccacgaatgttaccgagaggagaagtgt
gtgaagcccaggcagatcttgcacttcatggaaacaaggttctttaaagttcttctggaa
gcaattaaaaggaagactacaaagatggcgtcttttaatgaagtcagcactcggaagaca
actcggaaggatttagatgatgaccaagacaagacagtgaatagtttggaagctgtggca
gaggatgaagagaacattgttgatgcagaagctgatgaaggggatggtgatgctacagaa
acaaaacggagaaagaaccaggaagaagaggttgattatgagagcgaagaagagaatggg
gaagaaaacgttaatgagaatccagaagatgaagaggctgaatctgaaaaagaagaaggc
actcctggtgctgaagaggatcagaacagagcagagggtgaagattctcagcatctttcc
attgtgtctcagactaaaaaagggaaagatagattgcttcagtcagcagaggtgcgagtg
agcgctgttgtggagagccacccatccattcaggattacacctttgacaccgagaatgag
ctttggtgtgaggtttccttggcactgccactgaccaaggtgtactttgacctctcctcc
ctgctggcatccctggcgcgcagcacggtgatccacgaggtgaagggcatcacacgctgc
ctgctgaacgagagtaccagcaaggagggagagaaggaatctgttctccagacagaaggg
ataaacctggcagagctcttcaaatactctgatatattggacctgaacagactttattgc
aatgatatccatgccatggctaagaattatggaattgaatcagccctgagagtgattata
aaggaaataaaagatgtatttgctgtatatggaattgtggtagaccctcgacacctttca
cttgtggcagattacatgtgttttgaaggaatttataaaccactgaatcgcattggaatt
cagtccaactcctcccctctgcaacagatgacgtttgaaaccagctacaaattcttgaag
gatgcaacaataatgggtgcccacgatgagctgcgatccccttcggcctgcctggtggtt
ggaaaggttgtcaaaggaggaactggcttgtttgacctcaagcagcccctggcatag
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integrated database retrieval system
