KEGG   Stutzerimonas stutzeri A1501: PST_0778
Entry
PST_0778          CDS       T00511                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
psa  Stutzerimonas stutzeri A1501
Pathway
psa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:psa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PST_0778 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psa03021]
    PST_0778 (rpoC)
   03400 DNA repair and recombination proteins [BR:psa03400]
    PST_0778 (rpoC)
Enzymes [BR:psa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PST_0778 (rpoC)
Transcription machinery [BR:psa03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     PST_0778 (rpoC)
DNA repair and recombination proteins [BR:psa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      PST_0778 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 ApbA_C DUF3150 PPDFL
Other DBs
NCBI-ProteinID: ABP78475
UniProt: A4VHM4
LinkDB
Position
883919..888118
AA seq 1399 aa
MKDLLNLLKNQGQIEEFDAIKIALASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLIQIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFHGSGNLPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGMATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EASLHARVKVRINETIKDRDGSITKNTRIVDTTVGRALLFQIVPEGMSFDVVNQPMKKKA
ISKLINLCYRTVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGNEAEQDSFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEQGLHMTPHIEGGDVVEPLGERVL
GRVIARDVLKPGTDDVLVPAGTLIDEQWVDFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAVDNVLVKNGGTIRL
HNLKHVERADGALVAVSRSGELAVADDFGRERERYKLPYGAVISVKEGDKVDAGAVVAKW
DPHTHPIVTEMKGVVTFVGMEENITIKRQTDELTGLTNIEVMDPKDRPAAGKDIRPAIKM
VDANGKELLLPGTDVPAQYFLPANALVGVADGAEINVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEPSILAEISGTISFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNKGEVISDGPSNPHDILRLLGVSALARYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEITESGDSSFIKGDQMELTQVLEENERLSAEDKFVAKYVRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRKRDAEKPVR
VSADEVEAALTEALNSSGN
NT seq 4200 nt   +upstreamnt  +downstreamnt
ttgaaagacttgctgaatctgttgaaaaaccagggtcaaatcgaagagttcgatgccatc
aagattgccctggcgtcccccgagatgatccgttcctggtccttcggtgaagtgaagaag
ccggagaccatcaactaccgtacgttcaagcccgagcgtgacggccttttctgcgccaag
atctttggcccggtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcat
cgcggtgtgatctgcgagaagtgtggtgtggaagttgcgctggccaaggtgcgtcgcgag
cgcatggcgcacatcgaactggcttctccggtcgcgcacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgctggacatgaccctgcgcgatatcgagcgcgtgctctat
ttcgagagctacgtggtgatcgatccgggcatgaccactctggagaaaggtcagctgctt
aacgacgagcagtacttcgaagccctcgaagagttcggtgacgacttcgatgcccgcatg
ggtgccgaggctgtccgcgaactgctgatccagatcgacctggagcacgagattggccgg
ttgcgcgaggaaattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgt
ctgaagctgatggaggctttccatggctcgggcaacctgccggagtggatgatcctgacc
gtgctgccggtgctgccgccggatctgcgtccgctggttccgctggatggcggtcgtttc
gcgacttcggatctgaacgatctgtatcgccgcgtgatcaaccgcaacaaccgtctgaag
cgcctgctcgacctgtcggcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgatgcgctgctggacaacggccgccgcggccgcgccatcaccggttcgaac
aagcgcccgctgaagtccctggctgacatgattaagggcaagcagggtcgtttccgtcag
aacctgcttggcaagcgcgtggactactccggtcgttccgtgatcaccgtaggtccgacc
ctgcgtctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccgttc
atcttcggcaagctggaaatgcgcggcatggccaccaccatcaaggcggccaagaagatg
gtcgagcgcgagctgccggaagtctgggacgttctcgccgaagtgattcgcgagcatccc
gtactgctcaaccgcgcaccgaccctgcaccgtctgggtatccaggcgttcgagccggta
ctgatcgaaggcaaggcgatccagctgcacccgctagtctgtgccgcgtacaacgccgac
ttcgacggtgaccagatggccgtgcacgtgccgctgacgctggaagcccagctggaagcg
cgcgcgctgatgatgtcgaccaacaacatcctctcgccagccaacggcgagccgatcatc
gtcccgtcgcaggacgtggttctgggtctgtactacatgacccgtgaagccatcaatgcc
aagggcgaagggcgcgtgttcgccgacctgcaggaagtcgaccgcgtgttccgcgccggt
gaagcctcgctgcacgcccgggtcaaagtgcgcatcaacgagaccatcaaggatcgtgac
ggcagcatcaccaagaacacccgcatcgtcgacaccaccgtcggccgcgcgctgctgttc
cagatcgtgccggaagggatgtcgttcgacgtcgtcaaccagccgatgaagaaaaaggcg
atctccaagctgatcaacctgtgctaccgcaccgttggtctgaaggataccgtcatcttc
gccgaccagctgatgtacaccggcttcgcctactcgaccatttccggtgtttcgatcggt
gtgaacgatttcgtcatcccggacgagaaggcgcgcatcatcgatgcggccaccgaagaa
gtgaaggagatcgagtcgcagtacgcctcgggcctggttactcagggcgagaagtacaac
aaggtgatcgacctctggtccaaggccaacgacgaagtgtccaaggccatgatggccaac
ctctcgaaagagaaggtcatcgaccgcgaaggcaacgaagccgagcaggattcgttcaac
tcgatgtacatgatggccgactccggtgcgcggggttccgcggctcagattcgccagctg
gccggtatgcgtggcctgatggccaagccggacggctccatcatcgaaacgccgattacg
gcgaacttccgtgaggggctgaacgtactgcagtacttcatctccacgcacggtgctcgt
aagggtctggcggataccgcactgaaaaccgcgaactccgggtacctgactcgtcgtctg
gtggatgtcgcgcaggatctggtggtcaccgagatcgattgcggcaccgagcagggtctg
cacatgactccgcacatcgaaggcggcgacgtggtcgagccgctgggcgagcgcgtgctg
ggtcgcgtgattgcgcgtgacgtgctcaagccgggcaccgatgacgtgctggttccggcg
ggtacgttgatcgacgagcagtgggtcgactttatcgagctgaacagcatcgacgaagtg
atcgtgcgctcgccgatctcctgtgaaacccgctacggcatctgtgccaagtgctacggt
cgtgatctggcccgtgggcatcaggtcaacatcggcgaggcggtcggcgttatcgctgcc
cagtcgatcggtgagccgggtactcagctcaccatgcgtacgttccacatcggtggtgcg
gcgagccgtacctcggccgtcgacaacgtgctggtgaagaacggcggtaccatccgcctg
cataacctgaagcacgtcgagcgtgccgatggcgcgctggtggccgtgtctcgttccggc
gagctggccgtggcggacgacttcggtcgtgagcgcgagcgctacaagctgccgtacggt
gctgtgatttccgtgaaggaaggcgacaaggtcgacgctggcgccgtggttgccaagtgg
gacccgcacacccacccgatcgtgaccgaaatgaagggtgttgtgaccttcgttggcatg
gaggagaacatcaccatcaagcgccagaccgacgagctgaccggtctgaccaacatcgag
gtgatggatccgaaggaccgtccggccgcaggcaaggacatccgtccggcgatcaagatg
gtcgacgccaatggcaaggagttgttgctgccaggtaccgacgtaccggcccagtacttc
ctgccggctaacgcgctggtcggtgttgcggacggcgccgagatcaatgtgggtgacgtc
atcgcacgtatcccacaggaaacctcgaagacccgcgacatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcgcgtcgtccgaaggagccgtccatcctggcggaaatcagc
ggcacgatttccttcggtaaggaaaccaagggcaagcgtcgcctggtgattacgccgacc
gacggtagcgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaggtgaacaagggtgaagttatctccgacggcccgagcaacccgcacgacatt
ctgcggctgttgggcgtcagcgcactggcacgctacatcgtcaacgagatccaggacgtt
taccgcctgcagggcgtgaagatcaacgacaagcacatcgagaccatcctgcggcagatg
ctgcgcaaggtcgagatcaccgagtcgggcgattccagcttcatcaagggcgaccagatg
gaactgacccaggtgctggaagagaacgagcgtctgagcgcagaggacaagttcgtcgcc
aagtacgtccgcgtcctgctgggcatcaccaaggcgtcgttgtcgaccgagtcgttcatc
tccgcggcctccttccaggagactacccgcgtgctgaccgaagcggccgtgactggcaag
cgcgactacctgcgcggcctgaaggagaacgtggttgtgggtcgtctgatcccggccggt
accggtctggcgtatcacagcgagcgcaagcgcaagcgtgatgccgagaagccggtccgc
gtgagtgccgatgaagtcgaagcggcgctgactgaagcgctgaactccagcggcaattga

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